TCONS_00028416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028416
Unique NameTCONS_00028416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028416 ID=TCONS_00028416|Name=TCONS_00028416|organism=Clytia hemisphaerica|type=transcript|length=412bp
GAATAATGTAGCGCAAGAAAAGTAGCATATATTATAGAAATCAttgaaaa
ctactttttttatttaagactCTTCGCAGAAACAACTACTACCCGCAATC
AAATATATTTGCAAATTATGGATTTTTCTTCTGGATCACAACCACTCTCA
CAATCGGACattgatcaaaatttgaaagcagATGAGGAAAAAGAAGCAAC
AAAGTTCTTCATTGAAAGAGAAGAATATCTCATGGGAATTGTCGATAAAA
CCGACTGAAAGGATGATCAATGCTTTAACAGAGACAGTCAATGAAATGTG
CAAAGGATGTCAAGAAGGAGGAGCACAAAAACATCATGTCTTATGTAAAG
AACACATTATCAATACGACAATGAAACTGTTTGAACACATGTGGAATGAA
ATGGATATCGAG
Run BLAST on NCBI

transcript from alignment at sc0000676:9159..9570

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028416 ID=TCONS_00028416|Name=TCONS_00028416|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0000676:9159..9570 (Clytia hemisphaerica)
CTCGATATCCATTTCATTCCACATGTGTTCAAACAGTTTCATTGTCGTAT
TGATAATGTGTTCTTTACATAAGACATGATGTTTTTGTGCTCCTCCTTCT
TGACATCCTTTGCACATTTCATTGACTGTCTCTGTTAAAGCATTGATCAT
CCTTTCAGTCGGTTTTATCGACAATTCCCATGAGATATTCTTCTCTTTCA
ATGAAGAACTTTGTTGCTTCTTTTTCCTCATctgctttcaaattttgatc
aatGTCCGATTGTGAGAGTGGTTGTGATCCAGAAGAAAAATCCATAATTT
GCAAATATATTTGATTGCGGGTAGTAGTTGTTTCTGCGAAGagtcttaaa
taaaaaaagtagttttcaaTGATTTCTATAATATATGCTACTTTTCTTGC
GCTACATTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016097XLOC_016097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028416-exon-sc0000676-1491911889:9159..9570TCONS_00028416-exon-sc0000676-1491911889:9159..9570Clytia hemisphaericaexon
TCONS_00028416-exon-sc0000676-1510915933:9159..9570TCONS_00028416-exon-sc0000676-1510915933:9159..9570Clytia hemisphaericaexon
TCONS_00028416-exon-sc0000676-1575043694:9159..9570TCONS_00028416-exon-sc0000676-1575043694:9159..9570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000676supercontigsc0000676:9159..9570 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.443056	0	0.226433	0.409466	1.64978	1.67616	3.19604	5.58565	0.234881	2.43988	0.374499	1.855	2.98963	0.792326	2.05055	4.95697	2.94599	6.03583	0.185781	0.589268	4.0427	3.48599	1.59738	1.18481	1.21668	0.912185	1.36436	0.54093	0.387956	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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