TCONS_00028418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028418
Unique NameTCONS_00028418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028418 ID=TCONS_00028418|Name=TCONS_00028418|organism=Clytia hemisphaerica|type=transcript|length=707bp
AAATATTTATTTGGGTTCATAGTAATGGAGAAGAAGATATAATTTACAAC
AAAATAATagtcaataaaataaaataaaaacgtcaatttttgttttcttc
atgTATTGATGGATACAGTCGTCGACGCTCTCGAATTTGACGTtttacta
ccttatcggggaaaacttcgtcggggaaaagtttTACTATTCGATACATT
CCTCTTGTTCTTATTCATTTGGAAATTGAATTCAAAAGCGTCAATTGTAg
gttattttcttcttcactttttacTGAACGTGAAATTCAGTCCTTTGCTG
CCACTCGCCAACGATGAAGAGCTTGAAAAAGCATAATTACATGCACCGCC
ATTGATGCTTGTCCTCGAACCAGTGACCAGCATTGATCTTGGATTGGATG
TTAATTTGCTGACAGGCTTCTTCGAGTCACAGACCAAGCATGATTTTGGG
TTAGTTTTCGATTCGCTAATCATTTTGTTTAAACTTCCGTTCAAAGACAT
TGTTCGCTTCCTGTTTCTCCGGGAATGGTTATCTTCTTTCCAACAAGATT
TTATTCCAGCTAAACTTTAAATTCAATGTTTATTAagtctttttcaatat
tttcttctttactGTAATATTCTTTGCACTTGGAATGGAGTTCTAATTGC
TGTTGATGCTTCTTAGACTTGATGATGATTGTGATTTGATGATTTTAGTT
TCTAATT
Run BLAST on NCBI

transcript from alignment at sc0000676:21902..22608

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028418 ID=TCONS_00028418|Name=TCONS_00028418|organism=Clytia hemisphaerica|type=transcript|length=707bp|location=Sequence derived from alignment at sc0000676:21902..22608 (Clytia hemisphaerica)
AATTAGAAACTAAAATCATCAAATCACAATCATCATCAAGTCTAAGAAGC
ATCAACAGCAATTAGAACTCCATTCCAAGTGCAAAGAATATTACagtaaa
gaagaaaatattgaaaaagactTAATAAACATTGAATTTAAAGTTTAGCT
GGAATAAAATCTTGTTGGAAAGAAGATAACCATTCCCGGAGAAACAGGAA
GCGAACAATGTCTTTGAACGGAAGTTTAAACAAAATGATTAGCGAATCGA
AAACTAACCCAAAATCATGCTTGGTCTGTGACTCGAAGAAGCCTGTCAGC
AAATTAACATCCAATCCAAGATCAATGCTGGTCACTGGTTCGAGGACAAG
CATCAATGGCGGTGCATGTAATTATGCTTTTTCAAGCTCTTCATCGTTGG
CGAGTGGCAGCAAAGGACTGAATTTCACGTTCAgtaaaaagtgaagaaga
aaataaccTACAATTGACGCTTTTGAATTCAATTTCCAAATGAATAAGAA
CAAGAGGAATGTATCGAATAGTAaaacttttccccgacgaagttttcccc
gataaggtagtaaaACGTCAAATTCGAGAGCGTCGACGACTGTATCCATC
AATAcatgaagaaaacaaaaattgacgtttttattttattttattgactA
TTATTTTGTTGTAAATTATATCTTCTTCTCCATTACTATGAACCCAAATA
AATATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016099XLOC_016099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028418-exon-sc0000676-1491911889:21902..22608TCONS_00028418-exon-sc0000676-1491911889:21902..22608Clytia hemisphaericaexon
TCONS_00028418-exon-sc0000676-1510915933:21902..22608TCONS_00028418-exon-sc0000676-1510915933:21902..22608Clytia hemisphaericaexon
TCONS_00028418-exon-sc0000676-1575043694:21902..22608TCONS_00028418-exon-sc0000676-1575043694:21902..22608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000676supercontigsc0000676:21902..22608 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.577717	0.38181	0	0.171492	0.060033	1.11568	0	1.37745	1.70795	0.836474	0.849506	0.652565	0.0534907	3.17986	4.31662	18.1831	0.137788	0.201813	0.409104	1.04153	1.3011	0.273054	74.8266	145.292	1.02793	0.725051
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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