TCONS_00028425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028425
Unique NameTCONS_00028425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028425 ID=TCONS_00028425|Name=TCONS_00028425|organism=Clytia hemisphaerica|type=transcript|length=1668bp
CTaattttttgaagacaaaaaatacACAAACTTGATTGAAAGAGAACACC
TGAATAATCTTAAAATGGTTAATATGTCGATGGGTGGGGGTTCATCAGCA
ATAGCACCCGAAGAACAATCAAACAGATCATGTGAAAAACgaagtaaaaa
atcaaacacaTCTTCTTCAACATGCTGTGGTTGTTTTTCTATGGACGGAC
ATTACAGTGAAGATGAGGAGGACATAGAAAAAAGgacGCTAAGAGAAGAA
GCACGGTCATGGGCAAATAACTTTGAAcgattactaagacataatgttgG
ACAAAAAGTGTTTCAGGAATTTCTACAAGCACAATTCAGTGACGAAAATT
TACGTTTTTGGATTGaagctgaaaaatatttgaatatgACAGAAGAAGAA
CGAATGAAGCGTGCCAAATCATTGTACGAAGATTTTGTTTCATCAATATC
ACCATGTGAAgTTAGTTTGGATGCATACCATAGAAATCAGATTGAAAAAG
AAATGGATACAGCCCCTAAGAACTTATTCAAAAATGCACAAGATTATATA
TATTGTTTGATGTATAGAGACTGTTTTCCNTCAAAAATGCACAAGATTAT
ATATATTGTTTGATGTATAGAGACTGTTTTCcaagatttttaaaatcaaa
actgtaTAAAAGACTTTGCCGGTGATCTGTTAATGTATAGATTGTCATTC
ATGGTGTATTGAGGCAGTCTTATTAAATGCTGACATAGATTCTGGTATCA
AAAAGCTATTGCAACGAGCGGTGATAATGGCGTGTATGGTTGATTCTTGA
GACTCTTTATTCCATTTGCTCATACAAAGCTTCGATATCGCTGTTGTATA
GTTGCTGATGTTTCAACGAGGAATACAAGTCTACCAATACAAAGCATTTG
AAAACCTCAGACAACGAAGCATTTAGTGTCAGAGCAAACTCCTAAATACA
ACAGCTCTATACTCTTTCAAGAGAGACAAGAAAAGTATGACTTGGAAATG
TACATTGCCAAATGTTTTAATGATTGAAGAGAGATAAGTATTTCAGGAAT
TTAAGATAAACATCACCTCAATCAAACTCAGACTCAAAAATGCTTTGAAC
GATTTGTCCTTTTACGTGATAGCTAAAGTCGTGCTCAGTCGCCAAAAATT
TTAGGTCAACAGTAAGGCGATAGTATAATGTGGTCTAAAGTCTATTCGcg
ataagtgtgcacttttttttcttttacctataaatcttgaaagaattctt
caatctttataaatttggtatcattggaaagatattagtgagtggaacaa
tttggaatgaaaaaacttttaaaaatattctaaagatgaagatgaaaatg
aggaagaaaaaaatgaagatcttgtagaaaagtgctacaactatcatttt
cactgaggtGAATctttgatcatcgaacgtcatccctgtgaaaaaaattc
tcaaaaataatcattcagtcaaaagatataaaacaaagttataagctgat
tgacgtttaaaaacgctgttttctgcagttttttgccgttttttggggtc
aatcacttattaactttgtatcataactttatatttaataaatattttaa
tgaaatttcttcacagtgataatctcctaagatcaaagaatctctccagt
gaaaatgaaagttatagc
Run BLAST on NCBI

transcript from alignment at sc0000678:89223..108120+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028425 ID=TCONS_00028425|Name=TCONS_00028425|organism=Clytia hemisphaerica|type=transcript|length=18898bp|location=Sequence derived from alignment at sc0000678:89223..108120+ (Clytia hemisphaerica)
CTaattttttgaagacaaaaaatacACAAACTTGATTGAAAGAGAACACC
TGAATAATCTTAAAATGGTTAATATGGTTAGTATTAATATTTATCAATAA
AATAGAcccccaagcggttttcgtgatggcgtgataggTGCTTTTTTGCA
gtgtgattacgtgatttggaaattctttcttcgtgattgcgtgagggagg
tcaaaacgtgatcgtgatttgaaagatttttgagccgtgatacgtgattt
gggcttttttttaaaagggatgcgtgattgtccattttcttttttgctga
tttgcatgatcgtgattgaagacaaaaatcgtatgatatcgtgatcagag
ttaccgctgggagggcctcataaaatatttcttcagtttttttgtgTTAA
AGTATGAAATATCTTTCTCGAGTTTTGACTAGAtatgatatacacgtttt
tttttaaatgaacatccaaaatttttgaagccttaataggatattcttaa
ctttttgagatttaagcctaaaaatattcttaacatgttcttatttccac
TACTTTGTGAGTAttcttgtccattttcttaagaatttGGCCGTTTTATA
GTCTGCAAAGCTTGTTCTTCTAAGATGTTCTCAAATTgtccttaatattt
tggccgctgaagccttatgttcttatatagtttgttcttaaaaaaacgca
TAGACTATTTtaatgtaagaatatttttaacattatttCTTTTCCCAATA
CCTAACACTGGTTAAAATTTCACATTTAATTAGCCAATACTGAGGGATGA
AAATTTAGGCCTAAATGAATGAgtctgtaaaataaaaaaaaaattcacaa
agtttaggcaaaatacAAAAGGGTTAAGAGGGGTTCTATTTTCAAAggtg
tcaaaatttgatgacttcTTCAGCAATATTGACAAAATATTGTCAGGCGT
CAATCCACAATTTATGGCCATACTTTCCAGACTTCATGAAAAACGCCAAG
CCAATCATTCTTGAGGGTACTTTAATTATGTTCActacatgttgtttttt
tataagaacaaactatataagaacaaatggTTTCGATAGCCAAAATCTTA
GGAACAAGTTCAGCAcatttttttaggttttgaggactctaaaacaccca
atttcttaggaaaatggaccaaaatacttacaaaatggtaaaagcttaaa
actcaaaaagttaagaacatgtgaaggcttaaaaaattttggatgttctt
ataaaaagaaaacgtgtaccaTTCTTTAACCAATCAATAAGGTTCACTCT
TACTTGTAATTAAAGTATTCGTTGGTTCGCTTAATAATTTAACATGTGTG
TGGTAAAAAGGTTTTCCTACGAACAAATGTAATTATGACTTCTTAATAGT
CTTCCGATTGGCTTACAAACCGAAACTGTAgagaaaaaacataaacataa
acgaACTACagaatcagaattttttttttctgttggtCCTTTTGGCATTG
CTGGGAATTTTAAACGATGCCAATTTATGTTTACAATAACCCactatatt
tttaaattttgaagaattttctccagaaaaaataatttttaattttctac
aAATGAAAAAATAGTGATTATTAGTTAATTGATGTTGAcaaattgttttc
tttgttgTTCTAATTGGACTTGACGACCCAGCTTTTGTCAATTGAATTTT
GTGATATATACATCAAGAAAATCAATTATTATAAGCAGCTATTGAAAGCA
TGCCGCGGTAGGCCGGTTGAATGTTATGGTTTGAGCTACATTGTAAAACT
TTCCGATGGGTGTTTTATTGATAGATATTTGGATCAAAACGAGGATGATT
TTTTCACGATTGAATTAGAAATTGTTAAAATCGAGTAACTATTTACCACA
GGTAATTGTATTGTTGTGTCTTTTTAGcattgaatttaatttttttggaa
aggtagaaacataaaaagttttacattttttctccatgattgaattattt
tatcattattGAAAAATGAAGTAATTTCTTTAGAATAAGACCTAAATCAA
TCTTACAGTAATCAAGcttaaagattatttttgaaCCGCACCAAAAGTTC
TGAGGACTGTCTAAACTTGAGCTTATAAACAGGAGCAAGAGTTATCTATT
AAAAAAAGTCTAGATAAAGATCAACGCACATCCCTTCTTCCTCGTATggg
aaaaaattaatatttgctatacgtttttttataagaataaactatataag
aacataaggcttcaatggtcAAAATGCTaacaacaagttaagaacatttt
aaggcttggaggactcgaaaacacccgattttataggaaaatgggtaaaa
atggttataaaatggagaaaataagaacattttaagaatatttttaggct
taaaacccaaaaagttaagaacttccaaggcttcaaaattttggatgttc
ttataaagaaattatgTATGTTAATAATTTCGTACCTTGGAACCGCAATA
AAACTTTGTTGATGGTTGATGTTTTAATACATAATCCTTTAGATAAACAA
GTCATTTTCCGTGGAAAATACAAGGGATTCTTTTTGCTCATTTCCCTTGG
GAAATATAATACATAGATTGTTTTGGTTATTACCCTTGGAAAATTTAATT
TCACCAAGTAACTGACATTTACACTGATTAAGGAAGATATCATTTTTGAt
gttactttaaaaaaatattcatgaagACGACCTTTTCTTGACATACCCAG
TATTTTCTTCTAAAATCTGCAACATACTTAATCTCAAGCTGAAAGCGTGC
GAAAGGAGCATAATCATCCGATATTGGATATTGTCTCGAACGATGTCggg
aagtatttttttttcgtcaaaggttttgtttttgaataagagtgatatcg
tttgctcttactcataagttttaatttacaagctttttcacgttGAATTG
ACGCGCATGTGGAGAAAGATTGATCATgaagaggaaaaagaaaaacatat
ttcttttcattcagcacaatataacaatatgaAGACACCGTCCTGATTTG
AAATATGCGTGTCTGATATAaaacaggaacacttatgtaaaataaaacct
ttgaaCTGCgtaaaaaaatttaacttaagGTGTCTCTTTGGACATCCATC
AAAAGGGAGAATAGTGAGGGAGTTCTACTATGAAACATACAAAAATCGCT
CAGAGGTGGGTGTCCTTTTCGAAAGTCATTTGAAAGATACTTCTTTAGAA
ATATgacattttgaattaaaaaaatagacGGACATTTGTAGAAACTGTTA
AAGGTATTAATTAAAAGAAAACAGAACggattgaaattaaaatgttAGAG
GGTGGTCAACGTGTACATACATCCGTCAATGTGAAGTCATTTATATTTGT
GTAGTTTTTGATGTTgttagagtcgatattttacgtggatagcccagtaa
tctaggacttttagacagtctttcaattattttcacggggtccacggcca
gagccggctatctatgaactgaacggaacaggAGGAAGGAGTGGggattc
gaatcacgaatccctggtttgagaccccgctgacgcctttgaccgcTTGG
TCATCGCTCTGTTAAAAACTATATATTCGACGCTCACTTTAAGAGGTCAT
CTTCACTACCTCTTGTAATGAGCGTTGAATATGAAAAAACATGAAGCTTC
TGGTTATTCTTTTTATCATTAAATTAGTCGCGCATggaaacatttttcaa
tttatgtTTGTACGTTGAAATAGCTACATTTTATGAGAAGAGTTATAGTT
AAATATGTACAGCTTATTTTACTTTAGATTTTAAGGGACTAACAGCTTGA
TTTGTATAAAGGGAGGGAACCCATGCGGTAAACCTCTAGCTATGATAATT
GGTCAGCCtcggtgacccttcaaatcggttccgcgatttttttcccgctg
gtgAAGCTCtggatcaaaattttgaaacttttaaatcCGATTTCCGATCT
ctctttgatttctaaactttcttccgatcgggttaactttttgggtactt
ttagcgtgtgttgtttttaacgatcataatgtggtgtttcaagatggcgg
ctcaaacCGATAAAGTGTTgttccaaagtatttccagtgtgaATCTGTTt
gtctgttgcaagcttcaatttctgtcatttatttttctaacttggcaaat
caaacacattattttcatcaaggggattctttttctacatcttttgaagg
tttaaagccgtttgctcaagtttttgtttatgttgaattttctgatactt
tttattgttgCTTTTTATCACAGTACAGTAgctagtttttgcaataaaaa
catatttttcttgtttgcctttagaggggggattgatggtgttataatgc
tattggaatttgataaagtatacaaaagtacagctactgtctaaatttga
taaagactggatgcaatcgtgtttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNttttcttcattaaattttcaaaagtgcaCACTG
GACTACACCGGACTGTCTGGTACATTTTTCTCTCGGAGGAAACAAAGTAC
ACCAGACACTACACCGGAACTTTTGTCCAGTGTGATTTATCCATATATTT
GCGCACCTGACAAACTGCACCGGAATGTCCTGTGTATCAtgcatgccatg
tgaggggaattgggtagtcagtccaaggtgctgacgggacacTAACTTGG
TGTCTATAGTTGATAATATAATAGGCTTCTcggcctcctgcaactcaacc
acaTAGACATAGAGACATAgacgtaaatcagggtcggtcagatgacggga
accaaatgatgacgatcacatctcctattattggacttgcaaaattataa
caaaatggtctttggaatttgatcaatatTTGTCCTTTGTCCACTTCTTC
TTTCAGTCTGCGCCACAATTAGTTTTATGGCGTGAAATGCTAGGCAATTC
GATCTGCCTAGCCAGGGTgtagtatgcagtgctgacgagtcctaataagg
acgaaatgcataatgctgctctgccacctaaatctcctgaaagaagatat
tcggacagaaattctttgaatttctctACATATATACAGTTTTTTCTGAT
CTTTGCGCACGTTTTTGGCTTCAACTAAATGGTTGAtatggaatagacct
tttttaaaaaaggacgtcctgttgaataattatgtactccagccataaaa
acaatgatagagtcatgcataattactgtatcatgcatattgtaataatt
atgcatggttttatcattgtttttctgcNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTATcggacttgcagaaagcggactgcg
gAAAGTTATGAGAAATGGtttctagattttttaatgAAGTATATATACCA
ATAccatcaagttacacaacatggcCACTATCTGGCAAATGTGTTTTTCT
AGAGTGCGGTTTGTGACTACTGTAGCTTAAAATTGTTAATGGCGACCAGT
TACAATTTCTGGTAGGAGCTGCAGAGAATTGTGACATGACAAGGTATTAT
ATATTGGAATTTGGTAAAGTATacagactaaaattgttcctgctttagaa
atttatgaaggataaaaatatttctcacaAAGTTATATATACTGAAGATG
TAATATCAGTCATTTTAAGGAAAGGAAAAGATTTGATATATAAGCAGCTT
AAAAAGAtctaaattaaaaagaaaagaatgttTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGATTAt
acattttttgatttattatttttttgaaatcattcCAATATCAGATGAAA
AATACAATAAGAAAGATTGACTTTGAAACAAAAGAGAGATTCAATTTAAA
AGAATGAGAAACACAAAACCACCAAATAACAACTCTCAACACACAtatta
gtccgggagccaaatcctatatctccttaaataagcacttttgcttaacc
caagattctacaggataaactatacatttttggaatcctcaactatcctN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNatgatataatttgctgtatctagtcaatcagttgaccaattgc
tttgaaactttgcaaaaagtttgaaggtaggctgatgattattttNTgtg
aaaaactatttttataggtttgcctggggaaaaaaaggggaaatttgggt
attttaactaaaatttgaccctttttaagtctgggacctacccaaacaac
ttttaatgagacacaaactaggtgttatgatagaccttgttgatgcaata
catcagaaaaatttcaaacagacagtatttagtattatttcagggctgca
gggggtaaaattgcccatttttatgggtttttaccttatttgNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNttgagcaattttcaccactaatcttggttaaaacgtcatcaaaaata
gtttaaacttgattttcgtgtaatatatcctgaaagattacaatgctgac
ttaaaaaacaaaaccagggtgcaaatggacaaaccagggggtaaaaatgc
ccattttaggcgatttttatcgtttttggacttatttcacccataaagcg
gttttatcccttttatggtgtaccaattttatttctgaccactcattttg
tagtaggagcaatgggaaagttatttgtggttttcattgtctgtaatcag
ggtcactgtgggcaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAACCAG
TACAGGGACCATTTTTGGAAGCTttgaatagcaatatagtggaatttcaa
agcaaaaactgacaaaattacgtcaaaataatgttataatttggccataa
cttaagttaaatccatcattattttgtgtaggttgtcaacaaaagtatta
agaaatgactgaagggtatataactggtttccatctcaaaatttcataaa
tttgaggctaccatacaataaaaacatccaaattcaggcaacaactacca
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNacagacaatgaaaaccacaaa
taactttcccattgctcctactacaaaatgagtggtcagaaataaaattg
gtacaccataaaaccgctttatgggtgaaataagtccaaaaacgttaaaa
atcgcctaaaatgggcatttttaccccctggtttgtccatttgcaccctg
gttttgttagttttaagtcagcattgtaatctttcagggtatattacacg
aaaatcaagTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAGACTAACTAACATCCCAAACGAGTGAGGTTCCTGGACCTTTC
AACCGGCAGCTAATTGCAATTGTATCGAACGCTGATCTAACATTTGCTCG
catctcatcaaaattatcccTTTCACCCCTTTCACCCTCTAACCCTTAAC
CTTCTTAGCTcttttggctgaccttccagcctcggctggtttattttatt
tctttttgtcagcagaaatcaaagtttttatacTTTAAACTATCGGTGAG
CAAATAATTACAGCTTTTATAGTTCAGTTATGATAGAATTTACATAATAT
AATTTAAAGAAAGGCGTCGGGACTCAATGTATATATTGTGTTGTCTGCAG
CTGAGACGGTTAGCTTCTAACTTGTCTTAAATCCTGACTGACTAAGAATA
ACGGTgattatcggcgatccaaaaaatatctgcaatctgattggttaaaa
agagtacaaaataTCTTATATTAGCAGCAAtttaacgtcactttgctaca
aaagtgccttGCGTTTtcttccaacacaaaaagtgcattttttgggtcac
cgataaaccaattatcagacatttgctggtacaatatgaaaatattttac
tcgttccggattctccgtatattttcctcacctaaaggctcggaaaatat
tgtacagAAATACTCGCAACtttccgataactattacatatgcTTTTATC
GTGTTCGATTTTGTGTCCTTTGGTCTTCTGAATCGTTTCAGTCATTCGTC
TTCTGTTTCTCAAAACATGAATAAACTTGTTATATGATAGGTTTTTTTAT
GAGTTATGTTAGATCTGAAGATGCTCTACCATAGAGTAGggagaaaattt
atcaataaataaataatttttttgttgtttcttgcctGTGAACCATCCAA
ATATTCAAGTTTTAATGAATAAACTAAATATTGCAAATGTTTCCTGAAAT
CATGAAGTATATTTCTATAGCTGTAAACATCTAAGCATTTACATATCAGA
ACTGTGAAATTAAGTCAAAATTGAGACAGGCTTCTTGAGACAGTTACTAT
CCAAGCCTTGGTTTTGAGTACATAATGTAAAAGTTACAGCTAAATTAAAG
TTAAAACACATACAGTAAATttacttaaaaatgaaaatttcttaaaTTGA
TAGTCTAGATTTAGActactaatttaaaactttatacTAAAATGctacta
aaattattttaaactaTTAAGAAGGACGCTCTCCAGAGAGAGCGGTTTAT
GTTTATGGCAGACTTACTATTTTGCGGCTTTGTGGCAGAGTTACCGTTAT
ATAATGGTCAGGAAATCGAGACTACTAAATTTGGTGTCTTACTTTtctac
aatccgtgccataatatatttgcacttttggctaatttatcatttttcga
aaattgaagttcgagcaagaatgtcaattttaggccctcaacttgatttc
atcgattatttcgatctgggagggatttattggtttctaggctatatttc
aagccctcctggaccatttttgaacttttggatNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtcgaacctactttagagcactta
caaatcgattgtggtttcaaaacaccccggtgaatttcccttttgttcca
agtattttgtccctgattgtatcttcttgattttcttcttctttttcgtt
GACAGTCGATGGGTGGGGGTTCATCAGCAATAGCACCCGAAGAACAATCA
AACAGATCATGTGAAAAACgaagtaaaaaatcaaacacaTCTTCTTCAAC
ATGCTGTGGTTGTTTTTCTATGGACGGGTAAGTTGTCCGGGTTCGGGTGG
GAAACTGGTacacatttcttttataaacaaCCGAGTTTCTTACTAAGAGT
TCGCCCTGAGAATGGTAAAAAATTAGGCAACTTGGCCTTTGCAACCTAGC
CCTGAAACTGAGCATGAACCGGGAAAGCAaccaaaaatatctaaaaatga
agcattttcgGCATTATTTGTTTGGCATTAAATTGTGCACCGATTTGGAT
ATTTTggatatataaaataaaataaaaaacaaaatttttgaatttgctaa
gcatttttggcataaaatccatactctcgggtacctaatagccgtccccc
ccccgctaattaatttttcgaaaattttccacccaggacattcttattcc
aacccccccgcttattaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNcccacccccccccccgcttattaaattttgaaattttt
tccaacccccctgcttattccaacccccccggctattaggtacccgagag
taagcaattttttggctcaaatctgaaaaattcttaGCAACTCCAGCCCT
GAGCCGAAAATTTGAGTTGCTTATAGAGAAATGTGTATGCGTGGAGAAAA
ATAGTTACAGACATTTTTCTTACAATTTATAttccaaattttcgaaaatc
cagaTTTCAAAAAACAGTAGAGTGCCTGCATAActtgaacacgcacgggg
aacgcaaatcttttcgagttaaggaaatttggagtaatgatggagtaagg
tttataaggcattgttaactgcaGGGACAATATAaagtttgttcgagtta
aggagaaattcgagttatagaggtttgagttaaagagactccacttaGTG
ACTTTTTTAGGAAGGAAAATTTGTTTCCATTGTCTTGATTTTAGACCCCT
TTGGAACAGGCTATCTGTTTTTTTTGGTAGAGATATTTCGTGGTCCGGAA
GAACCCTTACCGAGTGCAGATATTCGATTCCCCTTTTGCCAGATTCTCCC
CTGGATGTCCAAGTCATTTAGGTGTCTAACCTAATGTCAGTCGTGGTCCA
TTGTATTGATTGAGCCCTTTCACTTCTCGGAGAAAGGTAGTACTAAGATG
GAAGGCACAATATTTATTAGTCAAATCGATTAGGCGTGCATGCAAGTCCT
TCAGGATAATTTTCTTGAGCTTGATGATCAGCTTTTCATTGATTTCATCT
TgactgtttttattttctatagACATTACAGTGAAGATGAGGAGGACATA
GAAAAAAGGTAAGTTGACCCAACTCACCTTTATAAACCATGGACTAAGCT
agtatccgccatctttgatcggaattTATTTGgaagtacagttgacgctc
tctaattcgattttgaaGGGGAATCTGATTTTTagcgaataagggagcgt
atcgaatagtagagcgtcgtttataagagtttcttgttgacagggacttt
caatattttatcgaataatagaacgtatcgaatagtagaccATTGAATTA
AGAGAGCTTCAACTGtagtacccgtaaagaagccactGTATGTAGTGGCG
CCACATGATCACAATTATTTAAGGAATGTTAGACCTAACGCTCTCGATGT
GTTTACACCGCATTTAAGTATACCACTTCCAAAATCTTCTCAGGTTGGCG
TACTGCCAATTCTGATTTGGAATGGATATTAAATGTGCTTTTAAGCGTGT
TGATTGGCTTCAGCAAAGGAATCTCACGAGCGGTATAGGCTTTTTCAAAA
TCTAGGAGTAAGTTGGATCCTCTCTGACTATGTAtatcttattcttttat
agctTAAGAAAAAACCTAAAACTGTATTTATGCAAAGGAGTGGCGGGGAC
CTCATGCGGCCATTTATTTGTGTCTGGTACCCTGAAAATGCAACTTGCAT
TTCGGAATGGTCTTGAACATGGTCTTTTTACTTTCacccgtttttttttt
aaggacGCTAAGAGAAGAAGCACGGTCATGGGCAAATAACTTTGAAcgat
tactaagacataatggTAAGTATTGCACTCGTTATTACGTGCCATTTCAG
CTGATCTTTGATATCTTCTAATTGGCGAGTACTCAAGAACTTTTTAACGG
ACTTTTGAAGTAGTAGTAGATTTTTTAAGTAGAACCTTTTGGTATAATGA
TAAAATAAGTTATTCGAGTTTGAAAccttaaaataattgaaaaaaatgct
gACTCAGCCGTATTTGTCtactaaaaatgataaaaaaacttttgacgTAT
AGTAGATATGCCGGGTAGATATGTCAAATAAAAGCTTGTTGGCCATGGGC
ACTAAATATTATGTTGCttaatcttttattttatagttgGACAAAAAGTG
TTTCAGGAATTTCTACAAGCACAATTCAGTGACGAAAATTTACGTTTTTG
GATTGaagctgaaaaatatttgaatatgACAGAAGAAGAACGAATGAAGC
GTGCCAAATCATTGTACGAAGATTTTGTTTCATCAATATCACCATGTGAA
GTAAGTTATCAATACTCCAATTCCATTTTAAGAGCTGTGTGCGCCCTTAA
CCATTTCAGCCGAAGACCCAGGCCACAATACCGAGTGTTTATAACAACAG
TTTTTTGACCAGAGAGATCgtattttatatttattacaTTAAAATCTTCA
ATAAGACGACGTTATCTCTCAATGCGGAGTTTGCAATTGGTTACAAAAGG
CTGAAAGGAAAACTTTCCGGGGAGGGGTCAAAATTATCTAGGGGAAATCT
CATAGAATCTTCCAAAAGAATTAAGTTTAGTATTTTAGTCTGTCTgttca
tggaggtataaagaaaaacaggagttgaatgtgttggtaattggtcgtta
aagtcttttgatttcttttataaaatgtatcaaaagaaattctaagctcg
cccgatgagactttttagtagaactcaagtttgctctgaacattctaatt
atcagtattgaagattctaaccttttaatatacgaaaattaaataaaact
tcgtccacgaaacaagtttatgttctatttcgttatccgttcaattttgt
tttgaaaagatattttctcaagccagaaaatgaaaagttctttataagca
cactcgatttcagactcaatctgtagacataaagtcgctggagaatttta
gaggaaagtatcaagcaatagagttaaccttaaagaaaacattgatcgaa
aaatcttattattTGACGAGGGATTGCCAAgtcctttttttagtccaaat
attttcttacactgatgtcagaaacaatgaatctcgtctcatctaatttc
taaagcttaaatgagccaataagatttcaccaatgGATAAAAAacctcat
taaaaatgcacgatatatgagattatgagcatgcatacatcgtaactttt
ttaatcgtagggcaagcttggttacaatagcataagTACTtttcctgttt
ctttatacctcgtGGTCTGTTGAGTGTGTTAGTCTCTCCTAATAAGCTGA
TATTAGATTATGATTGTTTTCTATCCACCACGCTGTAGCTCTAAatggat
gggtgaaaacataacaatctgacgaatatctATCTCAAAATCGTTAGGAC
CGCGATCATCTAGggctgggaatgacaacaaagtagCGTGGCTGTgtttt
tatgaatagggcgccgtatgaGGAAGATTtgcaacaagattcttgttgta
gtaTTTTCCGTGGGAGGACTAGTGAAAATAGTGAAACCCACTGGTCCACA
ATTTATCCAAGGATAACCGTCAACTGCATATGATCCGGACTATCTTCCTT
AATTGTAAGAAAATTATGGCCAGTTGTTATCAGGTTATATTCCTAGACTG
ATGGATTATGCTAGAAAGTATCGATTCTCGTATTATGAATAACCTAATCG
TTTAGTTTTTCCCTATGTTTGATTTGATACTTTTGATGGCTTTTTTACCA
TAACCATAAGAAAATCATGAAGAAATTTGACGGCACATAATGCCTCTTGT
CACTTTGTAAAGTAAAATTGTCTGAAACTTGAAACGCTCCTTTGAAAAAC
ACAATACCCTGTTAGTCTATAATTTCGACGATTGGACATTTTCAATCACT
GCCAGGCTGTTAAAGTGGggaggctcaaaatgagatgaaatctGCTAGGG
ATTTGAGAAAAagatctcatttgctcaaaaatgggaaggctgaagtctcc
ccaacCTTCCTTCTTCCTCAGGGCCTGAGAGCAATTATGAAAGATTATTA
AACTTTATTCATAGCGATGGGGTTGAATAAAATAGTAATCGGACATTCTC
AAAACATCCGAAAAGTTTTCAGCATAATGGTTGACAATACTAAGGATTTG
TGTAGACATTGAAGTCCAACCACATTCGCTGAGCTTTGCTCTTCCTATGT
CGCTTACCAtggtccgtataaaaaaccccagaagccttttgtttctttcc
atttttacttacttgaacttgcgttgagaaattagtttgttttgctcact
ttttgatcatgtgattaaatcttaaaccaatcccaggaggagtacttggt
aacgtgatcaaaagtttagcaaatcgattttcatcttttgaaaaagctaa
caaaaagttaaaacaataagcttccaaaCCAGAATTTTTGTATACGGATT
ATGCTCTTACCTATCATTGAGTGTCAAAATATATATCATAAATTATTTAC
TGCAGCTGATGTCTCTCAAGCATGTCATGTGCTGTGGTTCTTGCACCTTC
AGGGGGAATGACCCAACCCTACAGCTATGAGAGAAATAATCGGCCTATAT
CTAACTTGCCATTAAattcatatttattttcatttcataggTTAGTTTGG
ATGCATACCATAGAAATCAGATTGAAAAAGAAATGGATACAGCCCCTAAG
AACTTATTCAAAAATGCACAAGATTATATATATTGTTTGATGTATAGAGA
CTGTTTTCCNTCAAAAATGCACAAGATTATATATATTGTTTGATGTATAG
AGACTGTTTTCcaagatttttaaaatcaaaactgtaTAAAAGACTTTGCC
GGTGATCTGTTAATGTATAGATTGTCATTCATGGTGTATTGAGGCAGTCT
TATTAAATGCTGACATAGATTCTGGTATCAAAAAGCTATTGCAACGAGCG
GTGATAATGGCGTGTATGGTTGATTCTTGAGACTCTTTATTCCATTTGCT
CATACAAAGCTTCGATATCGCTGTTGTATAGTTGCTGATGTTTCAACGAG
GAATACAAGTCTACCAATACAAAGCATTTGAAAACCTCAGACAACGAAGC
ATTTAGTGTCAGAGCAAACTCCTAAATACAACAGCTCTATACTCTTTCAA
GAGAGACAAGAAAAGTATGACTTGGAAATGTACATTGCCAAATGTTTTAA
TGATTGAAGAGAGATAAGTATTTCAGGAATTTAAGATAAACATCACCTCA
ATCAAACTCAGACTCAAAAATGCTTTGAACGATTTGTCCTTTTACGTGAT
AGCTAAAGTCGTGCTCAGTCGCCAAAAATTTTAGGTCAACAGTAAGGCGA
TAGTATAATGTGGTCTAAAGTCTATTCGcgataagtgtgcactttttttt
cttttacctataaatcttgaaagaattcttcaatctttataaatttggta
tcattggaaagatattagtgagtggaacaatttggaatgaaaaaactttt
aaaaatattctaaagatgaagatgaaaatgaggaagaaaaaaatgaagat
cttgtagaaaagtgctacaactatcattttcactgaggtGAATctttgat
catcgaacgtcatccctgtgaaaaaaattctcaaaaataatcattcagtc
aaaagatataaaacaaagttataagctgattgacgtttaaaaacgctgtt
ttctgcagttttttgccgttttttggggtcaatcacttattaactttgta
tcataactttatatttaataaatattttaatgaaatttcttcacagtgat
aatctcctaagatcaaagaatctctccagtgaaaatgaaagttatagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016102XLOC_016102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028425-exon-sc0000678-1491911889:89223..89298TCONS_00028425-exon-sc0000678-1491911889:89223..89298Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1510915933:89223..89298TCONS_00028425-exon-sc0000678-1510915933:89223..89298Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1575043694:89223..89298TCONS_00028425-exon-sc0000678-1575043694:89223..89298Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1491911889:101478..101599TCONS_00028425-exon-sc0000678-1491911889:101478..101599Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1510915933:101478..101599TCONS_00028425-exon-sc0000678-1510915933:101478..101599Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1575043694:101478..101599TCONS_00028425-exon-sc0000678-1575043694:101478..101599Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1491911889:103295..103330TCONS_00028425-exon-sc0000678-1491911889:103295..103330Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1510915933:103295..103330TCONS_00028425-exon-sc0000678-1510915933:103295..103330Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1575043694:103295..103330TCONS_00028425-exon-sc0000678-1575043694:103295..103330Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1491911889:104026..104087TCONS_00028425-exon-sc0000678-1491911889:104026..104087Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1510915933:104026..104087TCONS_00028425-exon-sc0000678-1510915933:104026..104087Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1575043694:104026..104087TCONS_00028425-exon-sc0000678-1575043694:104026..104087Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1491911889:104409..104572TCONS_00028425-exon-sc0000678-1491911889:104409..104572Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1510915933:104409..104572TCONS_00028425-exon-sc0000678-1510915933:104409..104572Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1575043694:104409..104572TCONS_00028425-exon-sc0000678-1575043694:104409..104572Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1491911889:106913..108120TCONS_00028425-exon-sc0000678-1491911889:106913..108120Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1510915933:106913..108120TCONS_00028425-exon-sc0000678-1510915933:106913..108120Clytia hemisphaericaexon
TCONS_00028425-exon-sc0000678-1575043694:106913..108120TCONS_00028425-exon-sc0000678-1575043694:106913..108120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000678supercontigsc0000678:89223..108120 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.80518e-05	0	9.04533e-10	0	0	0	5.49848	3.49287	3.71138	1.28307	2.12403	0	0.9984	0.502943	0	0	0.493687	0.610502	2.38504	1.69262	3.2135	2.84695	2.53024	1.6798	3.80833	0.000426715	1.9403e-07	7.8598	0.000130318	0.374168
Blast
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BLAST of TCONS_00028425 vs. Swiss-Prot (Human)
Match: RGS17 (Regulator of G-protein signaling 17 OS=Homo sapiens GN=RGS17 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.733e-21
Identity = 46/124 (37.10%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  245 EEARSWANNFERLLRHNVGQKVFQEFLQAQFSDENLRFWIEAEKYLNMTEEERMK----RAKSLYEDFVSSISPCEVSLDAYHRNQIEKEMDTAPKNLFKNAQDYIYCLMYRDCFPSKMHKIIY 604
            EE  SW+ NF+++++   G+ +F+EFL+ ++S+ENL FW+  E   ++ +E+  K    +A+ +YED++S +SP EVSLD+  R  I + +     +++++AQ  IY LM+RD FP  ++  IY
Sbjct:   76 EEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACE---DLKKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIY 196
The following BLAST results are available for this feature:
BLAST of TCONS_00028425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGS172.733e-2137.10Regulator of G-protein signaling 17 OS=Homo sapien... [more]
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