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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028427 ID=TCONS_00028427|Name=TCONS_00028427|organism=Clytia hemisphaerica|type=transcript|length=1440bp
GcccaaatttcgaaaataatttgcgtgaattttgggtccgctggggagAA
CCTCGTTTAGCTAGTTACCCCCTTTCCCATGGATTAGTTTGTAATGGGGA
GGCCGGGGGCCAATGATAACGAATCTGAATACTTACAATACTTGTAACTG
AAAGTCTAAATGAAAAGTATATTTATATCTCGTCGGGGAAAGATAATTTA
GAGTGgattattttaagaaaattcaaaaatgaaaaacttataaatttgaa
aaagaaagattgGATTAGAAACGTAGATTTTTTCTAATGGACAAAAAATC
CAGAATTCTAAAGTTTTCAAACcttgaatttcaccgattttcaTATCTGG
TGTTTTATCAAACTTTGCATATCTTTCACGGATCAAAAGTTATCTCCCCT
CCACACTATTACCCTTCTTTGGAGCGCTTCCGCGGAGGGCAAATTGACCA
ACaagtatgtgcggcggttaagggtatgtttttcaaaatatcagaaatgc
aatGTAAGgatggacttttgataaatgcactgggAATGgatggaaatttc
agcaaaaatctaaaagccaatttcttCGCCGCACATACTGTTAGTTGGTA
AACCCATTACCCCCGGGAGCGCTTGTAACTTTTAGTCCAAGATAGATATA
AAAGTTCAGAATACATATGAAATcagcaaattttaaattttcaggacatt
gtgaattcaaaatttttgtgatCAGAAGatctttttatctatttttcatt
ttcatttttgaattttttttctccttccAAGAGCAATTTATGAAAATGTG
CCGACTTCCAGGTCTTTTTCGGGCAAACTTAAGTATTAACTCGGAAAGGT
CGGAAATTGATTAAATAGGCAAATAGTTACTTCTAATCAAAACTAttgta
aatttccaaaatagtttgacacccctgtctcacagctccggtggaacttt
ttccccagtggggataaaatctcctattgaaatcccagtGGGGATAGATA
TTCTATTGTTCCATTattgttaaaaaatccagtgggatgggtttggagtg
caatttttaaacattgaattttgaatggggatgaaatcaaagtcaatgtC
CCAGTGGGTCTGAAATTTCTGGTATTTTACCActggggacaaaatttttg
ccaaattttccagtggagctggggtcccagcgggtctgtgacacaggggt
gtaatttgGATCTTAAGATGATGACGCCAGGGATAGTCTTCATAGAttag
gattttatttccttAGTTGATTATTTAATTCCAACTCGTAAACTTATTTT
AAAAAGGTACAAAGATCATATATGTTATATACAGGATGTTTATTTAAATA
TATCATAAACTTATTCTCCGGCCATTTTCTTCGATTCAACTCCCGACAGT
TGAGTTTTTTTGTACCTTTATCCCATCATTTTTCGTGACA Run BLAST on NCBI transcript from alignment at sc0000678:109266..110780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028427 ID=TCONS_00028427|Name=TCONS_00028427|organism=Clytia hemisphaerica|type=transcript|length=1515bp|location=Sequence derived from alignment at sc0000678:109266..110780+ (Clytia hemisphaerica)
GcccaaatttcgaaaataatttgcgtgaattttgggtccgctggggagAA
CCTCGTTTAGCTAGTTACCCCCTTTCCCATGGATTAGTTTGTAATGGGGA
GGCCGGGGGCCAATGATAACGAATCTGAATACTTACAATACTTGTAACTG
AAAGTCTAAATGAAAAGTATATTTATATCTCGTCGGGGAAAGATAATTTA
GAGTGgattattttaagaaaattcaaaaatgaaaaacttataaatttgaa
aaagaaagattgGATTAGAAACGTAGATTTTTTCTAATGGACAAAAAATC
CAGAATTCTAAAGTTTTCAAACcttgaatttcaccgattttcaTATCTGG
TGTTTTATCAAACTTTGCATATCTTTCACGGATCAAAAGTTATCTCCCCT
CCACACTATTACGCGACCTTAGAATAAAAGGGTTCTAtcacaaaatttca
actttttgagttttatgcaTAAATGAAATCTTGAGNGCCTTCTTTGGAGC
GCTTCCGCGGAGGGCAAATTGACCAACaagtatgtgcggcggttaagggt
atgtttttcaaaatatcagaaatgcaatGTAAGgatggacttttgataaa
tgcactgggAATGgatggaaatttcagcaaaaatctaaaagccaatttct
tCGCCGCACATACTGTTAGTTGGTAAACCCATTACCCCCGGGAGCGCTTG
TAACTTTTAGTCCAAGATAGATATAAAAGTTCAGAATACATATGAAATca
gcaaattttaaattttcaggacattgtgaattcaaaatttttgtgatCAG
AAGatctttttatctatttttcattttcatttttgaattttttttctcct
tccAAGAGCAATTTATGAAAATGTGCCGACTTCCAGGTCTTTTTCGGGCA
AACTTAAGTATTAACTCGGAAAGGTCGGAAATTGATTAAATAGGCAAATA
GTTACTTCTAATCAAAACTAttgtaaatttccaaaatagtttgacacccc
tgtctcacagctccggtggaactttttccccagtggggataaaatctcct
attgaaatcccagtGGGGATAGATATTCTATTGTTCCATTattgttaaaa
aatccagtgggatgggtttggagtgcaatttttaaacattgaattttgaa
tggggatgaaatcaaagtcaatgtCCCAGTGGGTCTGAAATTTCTGGTAT
TTTACCActggggacaaaatttttgccaaattttccagtggagctggggt
cccagcgggtctgtgacacaggggtgtaatttgGATCTTAAGATGATGAC
GCCAGGGATAGTCTTCATAGAttaggattttatttccttAGTTGATTATT
TAATTCCAACTCGTAAACTTATTTTAAAAAGGTACAAAGATCATATATGT
TATATACAGGATGTTTATTTAAATATATCATAAACTTATTCTCCGGCCAT
TTTCTTCGATTCAACTCCCGACAGTTGAGTTTTTTTGTACCTTTATCCCA
TCATTTTTCGTGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028427-exon-sc0000678-1491911889:109266..109677 | TCONS_00028427-exon-sc0000678-1491911889:109266..109677 | Clytia hemisphaerica | exon |
| TCONS_00028427-exon-sc0000678-1510915933:109266..109677 | TCONS_00028427-exon-sc0000678-1510915933:109266..109677 | Clytia hemisphaerica | exon |
| TCONS_00028427-exon-sc0000678-1575043694:109266..109677 | TCONS_00028427-exon-sc0000678-1575043694:109266..109677 | Clytia hemisphaerica | exon |
| TCONS_00028427-exon-sc0000678-1491911889:109753..110780 | TCONS_00028427-exon-sc0000678-1491911889:109753..110780 | Clytia hemisphaerica | exon |
| TCONS_00028427-exon-sc0000678-1510915933:109753..110780 | TCONS_00028427-exon-sc0000678-1510915933:109753..110780 | Clytia hemisphaerica | exon |
| TCONS_00028427-exon-sc0000678-1575043694:109753..110780 | TCONS_00028427-exon-sc0000678-1575043694:109753..110780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000678 | supercontig | sc0000678:109266..110780 + |
Blast
The following BLAST results are available for this feature:
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