TCONS_00028440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028440
Unique NameTCONS_00028440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028440 ID=TCONS_00028440|Name=TCONS_00028440|organism=Clytia hemisphaerica|type=transcript|length=427bp
ttttatcattattatttttattgtttagtCTGTGTCAGTAAATGTACAAA
TTATTTATATACAAGTATAATAAATACCACCTGGATTTTGAAGGATGGAA
ACAGTCACTTCACAGTGGAGTATGTGCTGGTGGGTCTATTTATCTATACA
TTTTAGTACCATCAGGCCCGAAGGACCATTTTTGCTACATGGTTTACATG
GTTGTGGTGTGACAGAAACTTTACAAAATGACAGTTACTTCTGTTAATAT
AATGGACTGtgtgacccccccccctaatttGGTACTTTACTAGTAAATAT
TAATGCTATGTTAAAGGGATGACTATATGGTTTAAATAAAAGATCTTTGG
CCTGTAAATACCTGCTATAAGTATATACTGAGCAAAActtcccaattttt
ttccaatgttGATAAATGAGTAGAANT
Run BLAST on NCBI

transcript from alignment at sc0000678:21783..22209

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028440 ID=TCONS_00028440|Name=TCONS_00028440|organism=Clytia hemisphaerica|type=transcript|length=427bp|location=Sequence derived from alignment at sc0000678:21783..22209 (Clytia hemisphaerica)
ANTTCTACTCATTTATCaacattggaaaaaaattgggaagTTTTGCTCAG
TATATACTTATAGCAGGTATTTACAGGCCAAAGATCTTTTATTTAAACCA
TATAGTCATCCCTTTAACATAGCATTAATATTTACTAGTAAAGTACCaaa
ttaggggggggggtcacaCAGTCCATTATATTAACAGAAGTAACTGTCAT
TTTGTAAAGTTTCTGTCACACCACAACCATGTAAACCATGTAGCAAAAAT
GGTCCTTCGGGCCTGATGGTACTAAAATGTATAGATAAATAGACCCACCA
GCACATACTCCACTGTGAAGTGACTGTTTCCATCCTTCAAAATCCAGGTG
GTATTTATTATACTTGTATATAAATAATTTGTACATTTACTGACACAGac
taaacaataaaaataataatgataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016111XLOC_016111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028440-exon-sc0000678-1491911889:21783..22209TCONS_00028440-exon-sc0000678-1491911889:21783..22209Clytia hemisphaericaexon
TCONS_00028440-exon-sc0000678-1510915933:21783..22209TCONS_00028440-exon-sc0000678-1510915933:21783..22209Clytia hemisphaericaexon
TCONS_00028440-exon-sc0000678-1575043694:21783..22209TCONS_00028440-exon-sc0000678-1575043694:21783..22209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000678supercontigsc0000678:21783..22209 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79016	2.22179	4.42235	3.78576	0	0.520276	2.0923	1.76291	0	1.01922	1.97855	0.758697	0.865876	1.57364	0.831692	0.198341	0.12217	0.75132	0.172998	1.08618	0.472044	1.61173	0	0.848217	2.4462	0.467824	0	1.42892	0.361262	0.736137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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