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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028444 ID=TCONS_00028444|Name=TCONS_00028444|organism=Clytia hemisphaerica|type=transcript|length=1919bp
aaaagtttgttttcttttgtggaaatttcaatttgtttttctttgccaGA
AGAAATATCATCTCCAATACCTTCGTTATAATTTCAGATGTATTTTCATT
TAGAATGGAAGAAAAGCAGTGAAAGAATTTGAATTGTCCGTGTAATGCTC
AtcaaacaacgtccatgtaacAAGTAGATTCAAAATCATCATCAGGTGTA
TATAAGGCCGTAACAATGGATGAAAACTCAACAACACCCACCTGTTTCAC
GCCTTACCCAAGATTTCATTTAtcaagtgaacaaaaaataatccTGACTA
TTTACAATGTATTGGTTAATGGTGTCATCAACATGTCTTTGAATTTATTG
GTTATTTACATACTAATCGagacaaaacaaatcaaaatggtagccatGCG
GTTAATCTTATTTGTCAGCATTTCGGACGTTTTTGGTGCCGTCTCTATGG
CCTTTTTCATTCCGATCTTGATGCTCAAAAACACGTGTCATTTTTCAATG
GAGACTATCACGCTTTTCCAATTGGTTTTATGGGGTCATATGTCAGGCTA
TACCCTAGCCTTGATTTCTTATGACCGGTATAAGCGAGTCAAACTACAGC
ACTGTTATAAACTTATAATGACTCCGAGACGAGTCCATTTCATGGTACTT
ATTGTTGTTATGTTAGCATTTATACATGCTATTCTGTTTACATTGGGAAT
GttttataacaaattttttGGGACTGCCGATAAAATTGTGTTCGCATTCG
ATCTGACATGTCTGGTATGTATTTTCTATTTCTATGTCGTGTTCACAAAC
AAAACTAACCAAGCTGCGAGACGTTTTAGTGCAATATCAACgtataataa
aaattcaaattatctACGAACAACAAATCTTGTCAAGCGAATCTTAATCG
GCATGGCTTTCATGTTCGCTATATATTGTGCTGGATTGATCCCTAAAACT
ATGTTTAAAAGTTATTTAGACTCAAATCAACAGCTTGGAGAAGTGATCTT
TATGGTCACCAATTTTATGGTGCATACCAATGGTGCATTAAATGCGATTA
TTTTGTTATATAACGATAAAAAAGCAAGGAAGAAAGTCAAACTTATGTGC
tgcaattttgcaaaaaatttgaaagacgAGAAAACGCAATCTGCCAGAAC
TGTTCATCGAGATTCAATAGACGATTGAGGATATTGGTCATCGATTGAAA
CACCTCTGTGCCACaaacccgctgggaccccagccccctATGGAAAATTT
GACTAacatttcgtccccggtggaaaaataccctggaatttcagctcCAC
TGGGAAATGGACTTTCATCTCATCTACATTTGAAatccaatatttaaaaa
ttgcacagCAAAACCATCACCGCTGGAttttggaacaatataatttctat
ccacaATGGCGGAAAAAAAGTTACACCGGGGCTGTGAGCAAGGGGTGTAT
TGAATCACCTGTTAACTGAAACCCCACAAGAAACATTACCACGGTCGAAT
AATGTACCCAGGCGAGCTCTCCAAACATGGGATTTTTCAAGAGAACATTA
GATACCCCTTGTTAAGCTTATCTATATACTGCAAACTTTTAGATTGTTGA
AATTTGATAGATTTGAATTCTAAAAGTCTTATTGTGACTTCAGGCAAGAc
ctagccagtaccttcccagCATGCACTTTAGCAAAAATTAACAGAAATTA
ATTGTGTTAGTTAAAGGTTAACTTTTAGTCTAACAGGCCAGAAGGTACTA
GGtatttgatgatatttttgacaCTTATAAACTCCAACCCAATCCCAATG
TTTACTTATACAAAATACTTCAAAGCAAATAAAAAGTGTTCATTTcgaat
atatatattttttgcaGTATTTTGGCAAATTATTTTTAGGGAATATTGTA
TTTTGTagtaataaaataa Run BLAST on NCBI protein sequence of TCONS_00028444-protein >TCONS_00028444-protein ID=TCONS_00028444-protein|Name=TCONS_00028444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MDENSTTPTCFTPYPRFHLSSEQKIILTIYNVLVNGVINMSLNLLVIYIL
IETKQIKMVAMRLILFVSISDVFGAVSMAFFIPILMLKNTCHFSMETITL
FQLVLWGHMSGYTLALISYDRYKRVKLQHCYKLIMTPRRVHFMVLIVVML
AFIHAILFTLGMFYNKFFGTADKIVFAFDLTCLVCIFYFYVVFTNKTNQA
ARRFSAISTYNKNSNYLRTTNLVKRILIGMAFMFAIYCAGLIPKTMFKSY
LDSNQQLGEVIFMVTNFMVHTNGALNAIILLYNDKKARKKVKLMCCNFAK
NLKDEKTQSARTVHRDSIDD Run BLAST on NCBI transcript from alignment at sc0000678:124549..126467 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028444 ID=TCONS_00028444|Name=TCONS_00028444|organism=Clytia hemisphaerica|type=transcript|length=1919bp|location=Sequence derived from alignment at sc0000678:124549..126467 (Clytia hemisphaerica)
ttattttattactACAAAATACAATATTCCCTAAAAATAATTTGCCAAAA
TACtgcaaaaaatatatatattcgAAATGAACACTTTTTATTTGCTTTGA
AGTATTTTGTATAAGTAAACATTGGGATTGGGTTGGAGTTTATAAGtgtc
aaaaatatcatcaaataCCTAGTACCTTCTGGCCTGTTAGACTAAAAGTT
AACCTTTAACTAACACAATTAATTTCTGTTAATTTTTGCTAAAGTGCATG
ctgggaaggtactggctaggTCTTGCCTGAAGTCACAATAAGACTTTTAG
AATTCAAATCTATCAAATTTCAACAATCTAAAAGTTTGCAGTATATAGAT
AAGCTTAACAAGGGGTATCTAATGTTCTCTTGAAAAATCCCATGTTTGGA
GAGCTCGCCTGGGTACATTATTCGACCGTGGTAATGTTTCTTGTGGGGTT
TCAGTTAACAGGTGATTCAATACACCCCTTGCTCACAGCCCCGGTGTAAC
TTTTTTTCCGCCATtgtggatagaaattatattgttccaaaaTCCAGCGG
TGATGGTTTTGctgtgcaatttttaaatattggatTTCAAATGTAGATGA
GATGAAAGTCCATTTCCCAGTGgagctgaaattccagggtatttttccac
cggggacgaaatgtTAGTCAAATTTTCCATagggggctggggtcccagcg
ggtttGTGGCACAGAGGTGTTTCAATCGATGACCAATATCCTCAATCGTC
TATTGAATCTCGATGAACAGTTCTGGCAGATTGCGTTTTCTcgtctttca
aattttttgcaaaattgcaGCACATAAGTTTGACTTTCTTCCTTGCTTTT
TTATCGTTATATAACAAAATAATCGCATTTAATGCACCATTGGTATGCAC
CATAAAATTGGTGACCATAAAGATCACTTCTCCAAGCTGTTGATTTGAGT
CTAAATAACTTTTAAACATAGTTTTAGGGATCAATCCAGCACAATATATA
GCGAACATGAAAGCCATGCCGATTAAGATTCGCTTGACAAGATTTGTTGT
TCGTagataatttgaatttttattatacGTTGATATTGCACTAAAACGTC
TCGCAGCTTGGTTAGTTTTGTTTGTGAACACGACATAGAAATAGAAAATA
CATACCAGACATGTCAGATCGAATGCGAACACAATTTTATCGGCAGTCCC
aaaaaatttgttataaaaCATTCCCAATGTAAACAGAATAGCATGTATAA
ATGCTAACATAACAACAATAAGTACCATGAAATGGACTCGTCTCGGAGTC
ATTATAAGTTTATAACAGTGCTGTAGTTTGACTCGCTTATACCGGTCATA
AGAAATCAAGGCTAGGGTATAGCCTGACATATGACCCCATAAAACCAATT
GGAAAAGCGTGATAGTCTCCATTGAAAAATGACACGTGTTTTTGAGCATC
AAGATCGGAATGAAAAAGGCCATAGAGACGGCACCAAAAACGTCCGAAAT
GCTGACAAATAAGATTAACCGCatggctaccattttgatttgttttgtct
CGATTAGTATGTAAATAACCAATAAATTCAAAGACATGTTGATGACACCA
TTAACCAATACATTGTAAATAGTCAggattattttttgttcacttgaTAA
ATGAAATCTTGGGTAAGGCGTGAAACAGGTGGGTGTTGTTGAGTTTTCAT
CCATTGTTACGGCCTTATATACACCTGATGATGATTTTGAATCTACTTgt
tacatggacgttgtttgaTGAGCATTACACGGACAATTCAAATTCTTTCA
CTGCTTTTCTTCCATTCTAAATGAAAATACATCTGAAATTATAACGAAGG
TATTGGAGATGATATTTCTTCtggcaaagaaaaacaaattgaaatttcca
caaaagaaaacaaactttt Coding sequence (CDS) from alignment at sc0000678:124549..126467 >TCONS_00028444 ID=TCONS_00028444|Name=TCONS_00028444|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000678:124549..126467 (Clytia hemisphaerica)
TCAATCGTCTATTGAATCTCGATGAACAGTTCTGGCAGATTGCGTTTTCT
cgtctttcaaattttttgcaaaattgcaGCACATAAGTTTGACTTTCTTC
CTTGCTTTTTTATCGTTATATAACAAAATAATCGCATTTAATGCACCATT
GGTATGCACCATAAAATTGGTGACCATAAAGATCACTTCTCCAAGCTGTT
GATTTGAGTCTAAATAACTTTTAAACATAGTTTTAGGGATCAATCCAGCA
CAATATATAGCGAACATGAAAGCCATGCCGATTAAGATTCGCTTGACAAG
ATTTGTTGTTCGTagataatttgaatttttattatacGTTGATATTGCAC
TAAAACGTCTCGCAGCTTGGTTAGTTTTGTTTGTGAACACGACATAGAAA
TAGAAAATACATACCAGACATGTCAGATCGAATGCGAACACAATTTTATC
GGCAGTCCCaaaaaatttgttataaaaCATTCCCAATGTAAACAGAATAG
CATGTATAAATGCTAACATAACAACAATAAGTACCATGAAATGGACTCGT
CTCGGAGTCATTATAAGTTTATAACAGTGCTGTAGTTTGACTCGCTTATA
CCGGTCATAAGAAATCAAGGCTAGGGTATAGCCTGACATATGACCCCATA
AAACCAATTGGAAAAGCGTGATAGTCTCCATTGAAAAATGACACGTGTTT
TTGAGCATCAAGATCGGAATGAAAAAGGCCATAGAGACGGCACCAAAAAC
GTCCGAAATGCTGACAAATAAGATTAACCGCatggctaccattttgattt
gttttgtctCGATTAGTATGTAAATAACCAATAAATTCAAAGACATGTTG
ATGACACCATTAACCAATACATTGTAAATAGTCAggattattttttgttc
acttgaTAAATGAAATCTTGGGTAAGGCGTGAAACAGGTGGGTGTTGTTG
AGTTTTCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028444-exon-sc0000678-1491911889:124549..126467 | TCONS_00028444-exon-sc0000678-1491911889:124549..126467 | Clytia hemisphaerica | exon |
| TCONS_00028444-exon-sc0000678-1510915933:124549..126467 | TCONS_00028444-exon-sc0000678-1510915933:124549..126467 | Clytia hemisphaerica | exon |
| TCONS_00028444-exon-sc0000678-1575043694:124549..126467 | TCONS_00028444-exon-sc0000678-1575043694:124549..126467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000678 | supercontig | sc0000678:124549..126467 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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