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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028446 ID=TCONS_00028446|Name=TCONS_00028446|organism=Clytia hemisphaerica|type=transcript|length=1060bp
CTTTACTTGAGTTGCAAACAAGAACCTTTTACTCTAAATGAATTTTAGCT
CCTCTATTTTGTCCCCAATATAATAAATCCTCACGAGGCTAATAAGACAA
ggttatttcaaaaatcataaaagaaTAATTATGCAAAGGCGGTCAGCAAC
GAACTTTTTTCTGCCCTACCCAATGTCACTGTTGATTCTTTTCTTTATTC
CTTTGCACCCTTTTTTCTTTTCCGAATTTTATTTCTCCTCTGTCGACGGA
GGTCTTTTATCCGAATATTtggcaaaaagaaaaagtgaTATCAAGCCAAA
CAGGTGGAAACTCATATGGTGTAAAACCTCCCAAATGTCAACGTAGTCAT
TCTCTATATTCATCGGTTTCATCAATTTCGATATAGCCATTGGAAGCGTG
CAAGTGAAATATCCAAGTAAAATAACTCTTGGGAAACAAATcatttcgaa
agtttttttattctttttggcAGCATTTTTTcgaactaattttcttttct
cATGTTCTATATCTAAACGTTTTCGGATATATTTTCGTATGATGGTGAGG
TAAAACATAaggaaaacgaagaagaaggcGATGATTGAAATTGAAGATGC
ATACTTGACTACAACCAGTCCTGCAATATCCAGCAAACTGCATGAAAAGA
TTGCCAGAATCcataaaactaataaaatactTCTAAAACTTTTTGATGAA
GTTTTAAAGAAATTGCTAACATGTATAAACTCTGTTACCGCTAAACACAT
TAAGTGAAGCAGAGATGCCAAGATTGACCAAGCAGTTCCCAAGTACCGTA
TGTGATAATGCTTTTTAACGCTCATTGTGTATTCTTGTGATAGATTAACG
ATGTAGAATATGTTTGCTATCATATTAGCGAATCCATAGCTAGCCATGAT
GTGCTTAAAACGGTTATCAATACTATGGATCATTATAGAGCTTATGATTG
CCAGAAACGAAAGCGCCAGAGCTGTGGTATCCAAGGCAATGTATAGAAAA
TAGTTGGACATGTTTCATATGTGTGCAGTGTGATCTTCAACTGTACAATT
TCACCAGTTG Run BLAST on NCBI protein sequence of TCONS_00028446-protein >TCONS_00028446-protein ID=TCONS_00028446-protein|Name=TCONS_00028446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MSNYFLYIALDTTALALSFLAIISSIMIHSIDNRFKHIMASYGFANMIAN
IFYIVNLSQEYTMSVKKHYHIRYLGTAWSILASLLHLMCLAVTEFIHVSN
FFKTSSKSFRSILLVLWILAIFSCSLLDIAGLVVVKYASSISIIAFFFVF
LMFYLTIIRKYIRKRLDIEHEKRKLVRKNAAKKNKKTFEMICFPRVILLG
YFTCTLPMAISKLMKPMNIENDYVDIWEVLHHMSFHLFGLISLFLFAKYS
DKRPPSTEEK Run BLAST on NCBI transcript from alignment at sc0000678:134710..135769 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028446 ID=TCONS_00028446|Name=TCONS_00028446|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at sc0000678:134710..135769 (Clytia hemisphaerica)
CAACTGGTGAAATTGTACAGTTGAAGATCACACTGCACACATATGAAACA
TGTCCAACTATTTTCTATACATTGCCTTGGATACCACAGCTCTGGCGCTT
TCGTTTCTGGCAATCATAAGCTCTATAATGATCCATAGTATTGATAACCG
TTTTAAGCACATCATGGCTAGCTATGGATTCGCTAATATGATAGCAAACA
TATTCTACATCGTTAATCTATCACAAGAATACACAATGAGCGTTAAAAAG
CATTATCACATACGGTACTTGGGAACTGCTTGGTCAATCTTGGCATCTCT
GCTTCACTTAATGTGTTTAGCGGTAACAGAGTTTATACATGTTAGCAATT
TCTTTAAAACTTCATCAAAAAGTTTTAGAagtattttattagttttatgG
ATTCTGGCAATCTTTTCATGCAGTTTGCTGGATATTGCAGGACTGGTTGT
AGTCAAGTATGCATCTTCAATTTCAATCATCgccttcttcttcgttttcc
tTATGTTTTACCTCACCATCATACGAAAATATATCCGAAAACGTTTAGAT
ATAGAACATgagaaaagaaaattagttcgAAAAAATGCTgccaaaaagaa
taaaaaaactttcgaaatgATTTGTTTCCCAAGAGTTATTTTACTTGGAT
ATTTCACTTGCACGCTTCCAATGGCTATATCGAAATTGATGAAACCGATG
AATATAGAGAATGACTACGTTGACATTTGGGAGGTTTTACACCATATGAG
TTTCCACCTGTTTGGCTTGATAtcactttttctttttgccaAATATTCGG
ATAAAAGACCTCCGTCGACAGAGGAGAAATAAAATTCGGAAAAGAAAAAA
GGGTGCAAAGGAATAAAGAAAAGAATCAACAGTGACATTGGGTAGGGCAG
AAAAAAGTTCGTTGCTGACCGCCTTTGCATAATTAttcttttatgatttt
tgaaataaccTTGTCTTATTAGCCTCGTGAGGATTTATTATATTGGGGAC
AAAATAGAGGAGCTAAAATTCATTTAGAGTAAAAGGTTCTTGTTTGCAAC
TCAAGTAAAG Coding sequence (CDS) from alignment at sc0000678:134710..135769 >TCONS_00028446 ID=TCONS_00028446|Name=TCONS_00028446|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0000678:134710..135769 (Clytia hemisphaerica)
ATGTCCAACTATTTTCTATACATTGCCTTGGATACCACAGCTCTGGCGCT
TTCGTTTCTGGCAATCATAAGCTCTATAATGATCCATAGTATTGATAACC
GTTTTAAGCACATCATGGCTAGCTATGGATTCGCTAATATGATAGCAAAC
ATATTCTACATCGTTAATCTATCACAAGAATACACAATGAGCGTTAAAAA
GCATTATCACATACGGTACTTGGGAACTGCTTGGTCAATCTTGGCATCTC
TGCTTCACTTAATGTGTTTAGCGGTAACAGAGTTTATACATGTTAGCAAT
TTCTTTAAAACTTCATCAAAAAGTTTTAGAagtattttattagttttatg
GATTCTGGCAATCTTTTCATGCAGTTTGCTGGATATTGCAGGACTGGTTG
TAGTCAAGTATGCATCTTCAATTTCAATCATCgccttcttcttcgttttc
ctTATGTTTTACCTCACCATCATACGAAAATATATCCGAAAACGTTTAGA
TATAGAACATgagaaaagaaaattagttcgAAAAAATGCTgccaaaaaga
ataaaaaaactttcgaaatgATTTGTTTCCCAAGAGTTATTTTACTTGGA
TATTTCACTTGCACGCTTCCAATGGCTATATCGAAATTGATGAAACCGAT
GAATATAGAGAATGACTACGTTGACATTTGGGAGGTTTTACACCATATGA
GTTTCCACCTGTTTGGCTTGATAtcactttttctttttgccaAATATTCG
GATAAAAGACCTCCGTCGACAGAGGAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028446-exon-sc0000678-1491911889:134710..135769 | TCONS_00028446-exon-sc0000678-1491911889:134710..135769 | Clytia hemisphaerica | exon |
| TCONS_00028446-exon-sc0000678-1510915933:134710..135769 | TCONS_00028446-exon-sc0000678-1510915933:134710..135769 | Clytia hemisphaerica | exon |
| TCONS_00028446-exon-sc0000678-1575043694:134710..135769 | TCONS_00028446-exon-sc0000678-1575043694:134710..135769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000678 | supercontig | sc0000678:134710..135769 . |
Blast
The following BLAST results are available for this feature:
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