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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028454 ID=TCONS_00028454|Name=TCONS_00028454|organism=Clytia hemisphaerica|type=transcript|length=1992bp
cctgactgaaattcgagccgttactagcaaccctgcggggcccaaggcgc
cgagtatggcacccggcacagtgacaagccgttacctaagcaattccaaa
caacaaaacccccggaaaggtgactatcagcgatccgtggataaaaaaat
aaaataaaaaaatgaaggtgacttttggccatccGATCTAAGAGCATCCC
ACAGCCCCATGCTGTTACCTCATGAAAAATGGCGCGAAGTCCCTGGCTGG
ACAATTTTTTTAGTGATGATCAAATCAAAAGGATTGATAGAAAGAAATGG
CTTCAAGTTACAAAAGAATTCCAATTTGgagaagaaatatttaaagGGTG
CCGACATTGTAGTTGAACTCGGAGAAAAATCCAACCAAGAGGACTATTGC
ATGATTATTGAGATGTTTAATTCAATCGGATGTGGTGTGAACAGTGTCGA
AGATCACCCATTTGTTGATATCCAGCGCTTGAAGAAGATCAATGATTTCT
TTGATGATGTACCACGTTCTTTGCCGAAAGCTACATTACAAGCCTTTGAA
GTCTTGTCTCATATTCAAGGATGGCCAGAGCGTGAAATGGACAATAGTTT
TGGATATACTCCAATGTTTTCTCAAACACAAACACAGTATTCacaaaact
ttcaagttttctCTTCCTCCAGTGATCAAAACAGTCAACAACAAACCTCA
AAAAAGTCAAATCAAAACGACACAGAACAAAACAGTCAACCTGTTGTCTC
TATCATTTCTGGCAAAAGCAATAAACATGTTCACAAAGATCTAACCCAAA
GTAGTCAATCTGACCTATCCAGTTCTAAAGATAATGAGGCATCGAACACT
CAgaattctaaagaaaaaaacatccaAAGTAATGAAAAAGAAGAGAAGAC
CCGACAAACTGTTCCTTCAAATAATAACATCAGTGAAAACAAGAAAAGTG
ataccaaatcaaaacaaaataaagaacaacCCAATCGACCCAATGTTAAT
AAGGACAATAGCTTGAAAAATAAATCTGTGGCAATAACTGAAGCTCTGCC
ATCGGCCATCACCACAACCATTACCAGTAGGTTTATTGGTTTCACAGATG
AATTGGACAAATTACAAAGTCAAGAATATCCTCCTATTATTAAAAAGGTA
ACTTTACAGGAAGATGTTGTTAATGACTCTGTAGCCTCTACTGATGATGA
ATTACTTGAGTCTGAAAGTGAGCACAACTTTCCCAACAAACAGAAAGGAA
GCCACGACCtatcaaggaaaagaaacagATCTAATGAGTTAATTGACATG
GAAGTAGAAAAAGATCTCTCAAAATTACCGCAAAGTAGAGcaacagaaaa
aaatgttgaaaaaacaGACAACCTTATGGAAACTATaaataaaagattaa
aattaTGTCAAATTTGTCAATCAAAGAATGCAAAAAGTCCTTGTAAATCT
GTGAGCTCACAAGAAAGTTCTCCAGTAAAACAGGGAAATAAAATACCTGG
GAAAGTGTTGAATTTATGTAAAGCATGTGATAAACAAATAGGTGTTTTGT
TAAGTCCAACCTCCAGTAGTGCTGATAAAGAAGAATCTCCTGGTGAAAAT
AACCAGAAACAAATTCTAATGAAAACAAataacaaagatggcggaaCTTC
TATAACAAATGttcaagaaataaaaagaactgaaaatataattgaaaatg
aaagtgattctGAAACCGAAACCGAAACTGAATCAGAAGAGGAAGGTTGT
ATTCATGACCCAACGAGACAATGTTTTTCATGTTATATTCACTCAACAGC
ATTCACTCCGCTACCTAAATTACTTGTCGAATTTTCCAAAAGAGGATGTG
TTTGCAATAAACAAATggtttcttgatatttttttatttattcattgcAA
GTTTAACATTTTGTCAATTCTTTAAAGGTCCTTTGCGATAATACGctgaa
aagattttaaaataaattttctttgaagatttttcttttGCG Run BLAST on NCBI transcript from alignment at sc0000681:55098..61684+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028454 ID=TCONS_00028454|Name=TCONS_00028454|organism=Clytia hemisphaerica|type=transcript|length=6587bp|location=Sequence derived from alignment at sc0000681:55098..61684+ (Clytia hemisphaerica)
cctgactgaaattcgagccgttactagcaaccctgcggggcccaaggcgc
cgagtatggcacccggcacagtgacaagccgttacctaagcaattccaaa
caacaaaacccccggaaaggtgactatcagcgatccgtggataaaaaaat
aaaataaaaaaatgaaggtgacttttggccatccGATCTAAGAGCATCCC
ACAGCCCCATGCTGTTACCTCATGAAAAATGGCGCGAAGTCCCTGGCTGG
ACAATTTTTTTAGTGATGATCAAATCAAAAGGATTGATAGAAAGAAATGG
CTTCAAGTTACAAAAGTAAGTAGTTTTTAAACACAATATCTTTATATATA
TTTCCTACTAAAAGGTATTAGGACCCATTATCCGTacatttgtttgttta
aaaaaaatgaaatatgaatattaaaaaccagtcgaaccaaatcgaatgca
atcgaccgattgaaattcgattgtcgaatctcaatcgaatattaccgcaa
ttttcagattcgattgatattcgattgcgttcgattgatgttcgatatTG
CAACATACAAAGATTTCCAAATCCCcctaatgcaatgaaaaatgaaactt
ttctatgtttcacttttttgcacttattcttcaaaatgaaaatatttaag
attttaagttcttcttttatttaatgaattttttatggcactttgttgac
aatgtaactctcgcatcaaattcccgctttcttcagtaaattgaagatga
gaaaaaacctgaGCCACGGATCatggattgaaacaaatggGTGGAATTCT
ACAACCGctcgtcgtgcaaggcactgagaggccacgggtgccaaaaagaa
gggccgtttgaaatgcggcaacctcattggtggaaatttgataaacaccT
GCAAAGAGAGAccactttttcgttttttgtttcagttcgattttgatata
aacttcTTTCAGGGATTActttgtcaatgtacatgtacacatgtattgtg
tcaacttgtcagcattgtattgttgtaaagggaaagataaaagaggtaag
actagcctagtttctaatcctgatataggagtttaagtttagactgaaca
acttccatcgaaatgatctgtcacagtctaccatttttaacacggtccga
ggattgagccgagaacgcttgcAGAACGCCCGGGAGCTCTtgcgcgggtg
aaaaatttaatctgtcaatcattttctcaatcgaagagtatgcgaagcga
ttctagtTTTACGATGGTGCCGccgatcatcagtggatagtattcaatta
tcattgaATTATCATTcaattattcttttattttcagttttagtGGATAA
CCAAACTGCCCTGCGTGCTGTGATAGATGGTGCTTGAGACTAGGTTTGAT
ATAGAGAAGTACTATAAAGAAAAGTACTTCAAGGCGGCATCACAAATATC
TTGTTTCGCGTCGCCTGACCGACTCTCAAAAATttagtagaattgagtcg
gtgagtcatcaaatttgtcggactttttctgttGATGAtgtttccttcgt
tcaaaagttttattattgccatttttttgcgagcgatttctagcgcattc
gtgGCATTTTGACTTATCATAGAACCAatgaggacgcgaaatgaagatat
ttgtgattgtcgCCTAAAGCTAGCAGAAAGAATTTAAACTTGAAGTAGCC
TTAGTGCTGGGGTAGGCATAGGAGCAGGCATAATGTAGTAGTAGACTACt
aaatattataaatatttcaggggtggtcagtgtactagaaggcggcatgt
atatatgtgtactacaaggtatttttcaaaacttgacacccacccacccc
tgaagtatatacaccatactacatggaaaaagtccaaaacCACTCCATTA
CCCCCTATTTACTACCGGGTAGTAcctggaaaaaaaacaaaaccacccca
tatcccccatttactaccgggtagtacctggaaaaaaaacaaaaccaccC
CATATCCCCCATTTACTACCGGGTACTACCTGGAAAAATCCGGAaaatag
agaaacttttttccgaaaatcagaaaatcgggtaaacatttttccaaaaa
tcgggaaatcgggaaaaccctttttcggaaaatcggcaaaatcaggaaat
tgggaaaacttttttgcaaaaatcgaaaaaaacaggaaaatttttctcaa
aaatccaaaatgcgtgagaaatcaaacttttcaaaaattacgataaattt
caaacttggcttgatcaatttataatagaacaactttacaATGATGAATG
TTCTTTAATTGCTGTAAGTCCACCAGGGAGATCACTCCAGAGTTTAGCAA
ACTCCAGAGTTTAGCTGTTGATGGAGCAAATGAGTTTTTGTAGGCAAGCA
CTTGCCCATGCATTTGTTTGAATCAAATACAATTAGAAAACCTAGCCctg
tttgaaaatattgaaatatataTCAGGAATTGCAATTCTGCTCCATGAAT
GATATTGTGCATCAATATAAGGCTGCAANAGACTCAGGAATTGCAATTCT
GCTCCGTGAATGATATTGTGCATCAATATAAGGTTGCAAATTTTCCTTTG
AGTTTCTAGGGTTTTCTATTCTAGATCGTCCATCATTCTCGTTGGTCTGG
AGTGACGATTCCTGTCAGCATAAACAAAACGAGCAGATTTCCTTTGTATC
ATTTCAATTCTGTCTCGCAGTCCTTGATAACTCTCCCCAATAGGGTTCCA
GACAGTAGATGCATAGTTGAGGATTGGGTTTATGTACGTCTTGTAGGCTT
TTGCTTTGGTGCATCCTCTCAGATTTCGCTGTAGGAAGTTTCGTGCTTGT
TTACCTTTTTTGCAAACCATATCAATGTATGTATTCCATTTCAAGCGTTT
GTTTATAATGACACCAAGATATTTGACATTGTCGACACATTCAAGAATCA
CATTGTGAATGGTGTAGTTAGCAAGAAATGGTTTCGTTTTATTAGTTGTA
CGCAATAGTTTACAATTACCTGGGTGGAATTCCATGCTCCATAAGTCTTC
CCATATTTTGAGGTTATTCAAGTCGTTTTGTAAATTTATTATGTCTTCAA
GTGATATGGTTCAGTAGAGATAAGCATAATCTGCAAATAATCGTATCTTA
AAATCAACACATAGCAGAGGTCATTGATGTATATGAGGAATAATAAAGGA
CCCAATACTGTTCCTTGTGGGACTCCTGACTTGACTTCAGCAAACTTTGA
TGTTTTACCATTGACCACAGCTTGTTGCATTCAATTCCTATTGATTTTAT
CGACTACCTCTGACTCCATAGTGCTCAAGTTTGTGGCAATGCTTTGAATG
GTCAACCTTGTTGAAAGCTTTGCTGAAATCGAGCAGAATCAAATCAACTT
GATCACCATCATTTACTGTTAACAAAAGTTGAGATTCACAGGATCTTTAT
TCTCTGAAACCATGTTGCAATTCTGACtttgaggatttaaaaaatcacca
gTAAAATTGATCTTTATAGGGCGTAATATGCcatattgtaaacaaaacat
tttttcgatcaggaaattaaattttaagaaatttccaaattttgattttt
gaaacgCAAAATCAAATTCCGCAAAAATGTCTCCCCTTAAGGGAAAAGAA
TTGAACATCTCTAAAaaatttgactttattttttattgcatGATTGATGA
GCTTTCTAAATATATCACAACATCATATCATCATAGATTTTCTTACAAta
gttttattttaattttagaaTTTGAAACCCGTGTCCTGTTGAAAAGGTAT
TTATTCCAGCACATGCAAACAGTAAATCCATAAGGGGCCAGAAAGGCACG
GTGTGgtaaattattttaataattaATCATCTTTTTTGTTAAAGTTTTGG
AAGGAAACTAAAGATGGTATGATTTGTATTTTGAATGATGGATCACATTC
TATCTATGGTCTACTCCAAAAGAACGCCATTGGAGAATTTGAAAAGTAAT
CTTCTTAAAACTTATTTAAACTTTGTGGCATTGAATTTTAGCATTACTCT
TATGGTCAAAGATCTTTTTTGCACCATTTTTAGGTACAGTCTTCATTTAA
ACTTCAAAGGACCTGCAAATGTTTTTCTTGGTGTTTTCTTGAGACATTTT
GATATGCTGTCATTTTGTTGTATACAGTTTGTACAATTCCATATTGTCAT
TTTATATTTATAGGAATTCCAATTTGgagaagaaatatttaaagGGTGCC
GACATTGTAGTTGAACTCGGAGAAAAATCCAACCAAGAGGTTTTATTGAt
gattttaattgaaaattttcaggctACAAATAAGGTTATTAGTCCATGGC
TAAAAAAAATCAGATTGTATATTTACCACCTTAAATGATAGTTTATGATA
AATTTCCTGCCCTTGGTTTTATGACCAGTTATGACGTGTATATatgtaat
tttttcaagaaatgaaGGGGAAAAATAGTTCAGGAAATTGACACTAAAAG
TCTCATATTCATTGTTTTAATTAATCCAGCCTGAatggaaaaattttgtt
ttctattttacaATAGGACTATTGCATGATTATTGAGATGTTTAATTCAA
TCGGATGTGGTGTGAACAGTGTCGAAGATCACCCATTTGTTGATATCCAG
CGCTTGAAGAAGATCAATGATTTCTTTGATGATGTACCACGTTCTTTGCC
GAAAGCTACATTACAAGCCTTTGAAGTCTTGTCTCATATTCAAGGTGAGA
ATGTGCTATTAGATTTTAGATATATGTTAGAGAACATCTTAGCATCTTAA
AATCACTTTAGTAGAATTTGGGCTCAGCAATAATGATACATTATATTCCT
ATTCAATTCTATTATAAAAAAACTCGAGCACATGGTGAGTCTCAACTCAA
AATTCTGTTTGTATTGTTCACTCTTTCTGCTCAATGTATACCTTAaaagg
gaattaattttcgcagcaactaattttcgcgagacagCTTCCCTcgcaaa
ataatttaatttttgcgggacttattttcgctgTAACTTCGACTGTAAAC
TTTCGTgagggattatatttcgcgaaaattcgtgaaatataatccccgcg
aaaatttattccCTCAAGGTACATCATTTtttatggatattcttaacacA
CATGTATTTTTTAGGATGGCCAGAGCGTGAAATGGACAATAGTTTTGGAT
ATACTCCAATGTTTTCTCAAACACAAACACAGTATTCacaaaactttcaa
gttttctCTTCCTCCAGTGATCAAAACAGTCAACAACAAACCTCAAAAAA
GTCAAATCAAAACGACACAGAACAAAACAGTCAACCTGTTGTCTCTATCA
TTTCTGGCAAAAGCAATAAACATGTTCACAAAGATCTAACCCAAAGTAGT
CAATCTGACCTATCCAGTTCTAAAGATAATGAGGCATCGAACACTCAgaa
ttctaaagaaaaaaacatccaAAGTAATGAAAAAGAAGAGAAGACCCGAC
AAACTGTTCCTTCAAATAATAACATCAGTGAAAACAAGAAAAGTGatacc
aaatcaaaacaaaataaagaacaacCCAATCGACCCAATGTTAATAAGGA
CAATAGCTTGAAAAATAAATCTGTGGCAATAACTGAAGCTCTGCCATCGG
CCATCACCACAACCATTACCAGTAGGTTTATTGGTTTCACAGATGAATTG
GACAAATTACAAAGTCAAGAATATCCTCCTATTATTAAAAAGGTAACTTT
ACAGGAAGATGTTGTTAATGACTCTGTAGCCTCTACTGATGATGAATTAC
TTGAGTCTGAAAGTGAGCACAACTTTCCCAACAAACAGAAAGGAAGCCAC
GACCtatcaaggaaaagaaacagATCTAATGAGTTAATTGACATGGAAGT
AGAAAAAGATCTCTCAAAATTACCGCAAAGTAGAGcaacagaaaaaaatg
ttgaaaaaacaGACAACCTTATGGAAACTATaaataaaagattaaaatta
TGTCAAATTTGTCAATCAAAGAATGCAAAAAGTCCTTGTAAATCTGTGAG
CTCACAAGAAAGTTCTCCAGTAAAACAGGGAAATAAAATACCTGGGAAAG
TGTTGAATTTATGTAAAGCATGTGATAAACAAATAGGTGTTTTGTTAAGT
CCAACCTCCAGTAGTGCTGATAAAGAAGAATCTCCTGGTGAAAATAACCA
GAAACAAATTCTAATGAAAACAAataacaaagatggcggaaCTTCTATAA
CAAATGttcaagaaataaaaagaactgaaaatataattgaaaatgaaagt
gattctGAAACCGAAACCGAAACTGAATCAGAAGAGGAAGGTTGTATTCA
TGACCCAACGAGACAATGTTTTTCATGTTATATTCACTCAACAGCATTCA
CTCCGCTACCTAAATTACTTGTCGAATTTTCCAAAAGAGGATGTGTTTGC
AATAAACAAATggtttcttgatatttttttatttattcattgcAAGTTTA
ACATTTTGTCAATTCTTTAAAGGTCCTTTGCGATAATACGctgaaaagat
tttaaaataaattttctttgaagatttttcttttGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028454-exon-sc0000681-1491911889:55098..55412 | TCONS_00028454-exon-sc0000681-1491911889:55098..55412 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1510915933:55098..55412 | TCONS_00028454-exon-sc0000681-1510915933:55098..55412 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1575043694:55098..55412 | TCONS_00028454-exon-sc0000681-1575043694:55098..55412 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1491911889:59311..59386 | TCONS_00028454-exon-sc0000681-1491911889:59311..59386 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1510915933:59311..59386 | TCONS_00028454-exon-sc0000681-1510915933:59311..59386 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1575043694:59311..59386 | TCONS_00028454-exon-sc0000681-1575043694:59311..59386 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1491911889:59664..59841 | TCONS_00028454-exon-sc0000681-1491911889:59664..59841 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1510915933:59664..59841 | TCONS_00028454-exon-sc0000681-1510915933:59664..59841 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1575043694:59664..59841 | TCONS_00028454-exon-sc0000681-1575043694:59664..59841 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1491911889:60262..61684 | TCONS_00028454-exon-sc0000681-1491911889:60262..61684 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1510915933:60262..61684 | TCONS_00028454-exon-sc0000681-1510915933:60262..61684 | Clytia hemisphaerica | exon |
| TCONS_00028454-exon-sc0000681-1575043694:60262..61684 | TCONS_00028454-exon-sc0000681-1575043694:60262..61684 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000681 | supercontig | sc0000681:55098..61684 + |
Blast
The following BLAST results are available for this feature:
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