TCONS_00028456 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00028456
Unique Name	TCONS_00028456
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1820

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000681:62207..68599+

transcript sequence

>TCONS_00028456 ID=TCONS_00028456|Name=TCONS_00028456|organism=Clytia hemisphaerica|type=transcript|length=1820bp
caaaaacaagaaataaaaactaaaagaaaTAACTCTTTACTAATGGAtga
cctttatgatgacgtaaACAATTTCGATGATGACATCATAGACGAGCATG
ACGTCAGCGATTTTGATGGCGAGTTTTTGAACCCTGATGGAATACATAAA
GATGCTGAAGATAATGATGACAAATTTATTGGCCTAAACCACGAGTTATT
TGTTGATAAAGAATTGGCAGAAAATTTAGAAGATCTACATGTGGATAATG
AGGACGATGCACACGAGTCAGCTCTTTTTGATCCGCCTCTTTATAAACAA
CGTTACCATGCTGTTGCTAAAGAGATCAATAAGAATGGCAAATATATCTT
TTTCATGGGATTGTACCAAAAACAAACGTAAAAGATTTTTACCAAGAATA
ATCAACAACGAATTAAATTCAAACGTACCGAGAGAATctttaaaagattt
caaaaaagttgatTCAAAGAAACTTCATAAAGATTGCTTTATAACTGATG
ATGGTGGCCTGGCTAATTTCTGTTGGCTTCCAGATTCGGACAAATTAGAA
GTAACAGTCGTCAATCATATGAGATCTATAACGAAACGATGGATAGTAGA
CTTTGATAAAATCACAGAATCCCTTGACAACGTGAAGATTATATTCGCTA
CTGATATGTCCCATGTTGTTATTTTGCGtccaaaaagaaacttttttaat
cCAGACCTAATGACTGGGATACAAGTacatttaatgaaattaacaatgCA
TAAATGCCATCCTGAAAACAAATTATACCAAGTTAGAGAAATCAGTCGTT
TATTTGTTCCCTCGAAAAAGCAAATACTATATTATGGTTACGATGCTTCG
ATTTCAAATGGAGGGGTTCTAACGATTGGTTCTTTGCTAGCCAACGATAC
AGGCTCCATGATGCTACATCATTTTAAACTGACACCTGAAAACAATTCTG
GTGTTTTTATACAGCAACTAGATTGCTCACACACTATAAGGGCTGATCGG
TATAACACGTTGAATCTTGGATGTTATAGTAGTTCTGGTGATATATTAAT
CATCAAACAAAAGTCAGGGATTATCAATGATGATTGTTTTCTGGTCAATT
TATCATGTTTATCTGAAAATGTTACCAAATTTCATGGACTTCATTTGTTT
TTAGTACGTCATGACTCTAGCGAGTATTTGATTTACAACGATAGCTCGTT
CATAAATGATAATATGGTCCGAGAAAATTTAATCAAAGTTGATGTTGTAA
CTAGAGAAAAGAATGGGACCTTGTTGTTTCGGAATATATTAACATTAAAC
GAAGGTATACTTTATAATATGGTGCTACACCATGCTGAATGTTTTGatga
ttcaaatatttttgccgTTACTAATGACAACTATGGAGGCTACTTCGTAA
TAGATGTATTTGCTAAGAGACTTGTTCATATCATAGAGACATCGTTTATG
AAAGAGcataatattttttataattttcatcaGATGAATTGGCGATACGG
TGAATTATTTCTGTTATGTTCCAGTTATCAAAGATATAACTTGAAATGTA
TACCATTAGATCAGAGTTTTCCATCACTATTTGAACTCGCctgtgaaaaa
gtttttgagacTTATAATATAAAAGAACTGCAGAACATGAATTTGTCGGA
TAATTTAAAGGCTTTGTTGTATTTACCGAATGACCAGGAACCTATCAAAC
ACCATAAACCAATAACTTTACCGTCAAGCTCTACTTTGGTTTAGATTCTT
TTATTACTTACAATTACAATTTATTACTCGCAAAAACACAATAACTCCAA
TATTATAGAATAACATACAG

Run BLAST on NCBI

transcript from alignment at sc0000681:62207..68599+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00028456 ID=TCONS_00028456|Name=TCONS_00028456|organism=Clytia hemisphaerica|type=transcript|length=6393bp|location=Sequence derived from alignment at sc0000681:62207..68599+ (Clytia hemisphaerica)
caaaaacaagaaataaaaactaaaagaaaTAACTCTTTACTAATGGAtga
cctttatgatgacgtaaACAATTTCGATGATGACATCATAGACGAGCATG
ACGTCAGCGATTTTGATGGCGAGTTTTTGAACCCTGATGGAATACATAAA
GATGCTGAAGATAATGATGACAAATTTATTGGCCTAAACCACGAGTTATT
TGTTGATAAAGAATTGGCAGAAAATTTAGAAGATCTACATGTGGATAATG
AGGACGATGCACACGAGTCAGCTCTTTTTGATCCGCCTCTTTATAAACAA
CGTTACCATGCTGTTGCTAAAGAGATCAATAAGGTTAGCCCAAAGTGTGT
ATTGGATATGGGATGCTCTGAAGGGCAATTTTTGCCAGTAATCAAATCAA
TGTGTCCATCTGTTGAGGAGATCAGTGGAGTTGATATTGACCAGTCATTG
CTGGAGAGAATGGGTGGTCGACTACGCCCATTAAGTATTGAGTATGTTTT
AAAGCGAGACAAACCTTTAACTATGAGATTATTACATGGGTCAATAACCG
AACCTTCAAATGCTTTCATTGGTGTGGATTTTATATCTTGTATTGAAGTC
ATTGAACATTTATATCCAGAAGATCTTACAAAAGTACCTGATGCTATCTT
TGGTGTTTTGAAACCGAAAACAGTCGCAATTACAACTCCTAATAGCGAAT
ATAATGTTTTGTTTAATAAGTTTTCTGGGATGAGACACTGGGACCATAAG
TTTGAATGGACTCGTGCTGAGTTTGAAAAGTGGTGTGAAGACATAGTGAA
AAAGTACCCTTATATAGTTGAATATTCTGGGATTGGTGAACCCCCTAAGG
AGAGATCAGATGTTGGTTATTGTTCACAGATGGGTCTATTTACACGACAA
CCGCAACATCCTTGGTTAAATATTATCTGTCAACCGGAGGAAAGGCTAGA
ATATGAAGTAGTTCACGAGTTTATTTATCCACACGATTCGACCGAACGTT
CTCAAAAGATTCTAAATGAGATATGTTATTTAGTAAATCGGTTTTACAGT
AGCCAAGGAGAAGAAGTTGATGAATCCTTTGATAGAACCATATCTTTGGT
CGAACTTTTGGAATACCCAAGTATAAATAAACTACAGACCAACTTGAAAG
AGGTtgttgatattttacagactgaAAAACATGCTTATGATTTGAGTGAA
GATGAACAATCACTTGTGGTTCATTTTAAACAGTCGGATTTCGAGAAAGA
TTGGGAAGATGAAGATATTATTGTAGGAGTTGAAGAAGATTTAAATAATG
TTACTGAGGGTGTGATAAACGAGAGCAATGGTATTGTTGACGAGGAAGAA
GAGTCATGGGATTGAGGATCAATATATCACTTATTCTTTAGGGTCTTctt
tgcaaaaataaatttttcctaTTCCATtacatgttttattttataagcaa
gtgtccgCCCTTATGGTCAGGCTCGAGTAtctttcaaagcatccaggcgt
AGCATATGTTTATTATGTTTTCATAAACATACTATTATGCTCTCATTCAC
CCAAcccaattttttataaaatatcagAGATTTATTTGTTAACATTCGAT
TCAAAAAGCGTTTAGATTTttggagcagtggaatgtggctACAATCATTG
ACAAAACCTATGACACCAAGCCCAAAATTGAGTTCCttcccccctctccc
cccccccaAACAATGTTGTCGGAGGGGGCTGAAGACCGGCCAAGCAATAT
TTCTTTCCCAGCAACTTTGTTCGGAGGGGAGGGGAGGTTATTGCCCTGTG
TCTAAATTTGACGGCCAGAAATGTGCCATAATATATTAGCAACGGTTGTA
ATCGTGGAatatctttttttacttgaccactcCCAAACCTTTTTGAACAT
AAAAAGATTGAccacatgaaaaatatttcaggctgacgtatatgcttatg
ttatgcttaggaaattTGCAAATCTGATCCTTCATATGCTTacaagcgtt
atgcttataaaaaaaacatgtaaatctCCATACAGCGGGATGgatgaacc
ttttcaagtcaaaaaatgaaTATTAGAAATGTATGGGAGATTGCAAAACT
TGCAAAAGAACCtttggaaaaaattcttttcgtaCGTTAAAGTGAGAGTG
GACGAtttaaaatcagtcttttaccccctgtaaaattgaaaaaatactcc
tttagaccccctggaaatacTTTGGATTACCCCCAGGAAATTTCGTCCAT
CACCTCCCCCcggtatggatataaaatggaatgacccaATCTTTCAGGAT
TTGATTAttattgaatattgaatatttccTTATAGTCAAcatatttttgg
ccattttccacGTTGGAAATCAAGGAGTTGAGGGCTCTAttttaagtttc
attttttcatctttagaTTGTTAAATAGTTACAATTCTACtgattaaaaa
attgaaacttttcttGATACTTTTAAAGAGCTTTTTGCTATACATATGCT
GTTCTAGCCATATTTTTAAGTTGATATTGTTTTAGTGTCAATAGCATTGT
tgttttttctcaacttcagttgagctagaatctgacaatgtatgtgtgtg
tgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtatgtgTGTATGTGTGTTGGGTGAAATATCTTGT
ACAAACCTCTAAAAGCTCATAAGTGATTTTAGATTGACTTTAAGGAGATA
ATTATTTTCGTCGATAAGCGGAGGTGTATACTGCTTATAAATGCTGATAA
ATGACTTTAGTGAGGATATTGTAGTTGGCAAAATGTTGATAAGTTCGAGC
ATGGTGGTGAGCTTATGGTattttttttcgagatttttaaCTTTAAGAGA
GTTTCCACTAGATTGTTCAGCATAAGTGTAAGTGTTTAACAAATTTAACT
GGGAAGACAAGGGTATTGGTGCCTATTGAAATTCTCTCTATTATTGCATA
TGTAAAAAGGCACTGGGTCACATAATGCATTATTAGCAGAAAAATCGTCG
gcaaaaattgaggaaaaaataaCTACTTAGGGGCCACTCACATATCAATG
TTTCCTGCGACGAACGGTCGGGTCAGAGGGAGTGGCGCtaagaaaatcca
taaaaaacatcgattttCGGGGACGATTGAAGGTAAACtagatatttctt
tttttgttaaCTACCCTCGCTGATCATAGTTTTGTCGTCTATCTCTTttc
cgaaattaaaaaaaaagattgataaatttttcgtgTAAAAAACATATAGG
GGGTAGGTTTgaagagttaaaaaattaacgatttcatcaatttttggtGG
CTGACGCTAGGGTTAAGGAGTTGGGGTCTTGGACATAGCGTTGTAATGAC
TTTAGTGGTGGGAAAATCAATATGTAAGTGAACCCTTAGTGACGAAGGTT
GTTTTCCAACGGATTGTTTTGTCGACGATTTTTTTAATGGACGGTTAATT
TTTCCNAGTCGAACTTTTGGAATACCCAAGTATAAATAAACTACAGACCA
ACTTGAAAGAGGTtgttgatattttacagactgaAAAACATCCTTATGAT
TTGAGTGAAGATGAACAATCACTTGTGGTTCATTTTAAACAGTCGGATTT
TGAGAAAGATTGGGAAGATGAAGATATTATTGTAGGACTTGAAGAAGATT
TAAATAATGTTACTGAGGGTGTGATAAACGAGAACAATGGTATTGTTAGC
GAGGAAGAAGAGTCATGGGATTGAGGATAGATCATTTCTATCactatatt
tttttgggtcttctttgcaaaaacaaatttttcaattctaatGGACTATT
CCATTACATGTTTcattttataagcaagtgtctgccccttggTCGGGCTC
GagtatgcttaagctttcaaagATCCAGGCATAgcatatgcttattatat
gttTTCATAAACATATTATTGTACTCTTCATTCACCCAAcccaatttttt
ataaaatatcagAGATTTATTAGTTAACATTCGATTCAAAAAGCGTTTAG
ATTTTTGGAGCTGTGGAATGTGGCTACAATCATTGACAAAACCTATGACA
CAAAGCCCAAAATTGAGTTCCttccccctccccccccccccaNtattgaa
tattgaatatcTCCTTATAGTCAAcatatttttggccattttccacGTTG
GAAATCAAGGAGTTGAGGGCTCTAttttaagtttcattttttcatcttta
gaTTGTTAAATAGTTACAATTCTACtgattaaaaaattgaaacttttctt
GATACTTTTAAAGAGCTTTTTGCTATACATATGCTGTTCTAGCCATATTT
TTAAGTTGATATTGTTTTAGTGTAAATAGcattgttgttttttatataaa
caTAGTTTTGTATATATCTTACAGTATTTACTGTACTTTTTActatcaaa
aaagaaagttaGTTGTTTTGTAACATCATCGACAATGATGATgtgttttt
aaactttcaaaaatgtCATGTTAACACCATCACTTTTCTTTCTTATGCCT
TCGTATGCAGATTAATATGTCAAATGTTTATTTATAGAAGGAATTTTGAT
CAAAGTTCTATCACTGTCAgcaattttttatattatgtatGAAAGATTTC
TTAATTTTCAATCTGTTCCGCAATTTAACTTATTTTTTATGCTGGCTATG
CATTTTTTAAGACGCCGTTAAATACATAATTATCAAGATCGAATTATTAA
TATTGGCTACAAATCTTGTTTTACGTTTTTGAGCAGAGCATGATTATTAT
GTATTGAACTCTTACTTTTTTGTCATGAGGTTCCCATCAGCTAGGGGAAG
ATTGAAATTACCAACGCATATGGTTTACTTATAGTTTCTTATTTATCTCA
TTTTAGAATGGCAAATATATCTTTTTCATGGGATTGTACCAAAAACAAAC
GTAAAAGATTTTTACCAAGAATAATCAACAACGAATTAAATTCAAACGTA
CCGAGAGAATctttaaaagatttcaaaaaagttgatTCAAAGAAACTTCA
TAAAGATTGCTTTATAACTGATGATGGTGGCCTGGCTAATTTCTGTTGGC
TTCCAGATTCGGACAAATTAGAAGTAACAGTCGTCAATCATATGAGATCT
ATAACGAAACGATGGATAGTAGACTTTGATAAAATCACAGAATCCCTTGA
CAACGTGAAGATTATATTCGCTACTGATATGTCCCATGTTGTTATTTTGC
GtccaaaaagaaacttttttaatcCAGACCTAATGACTGGGATACAAGTa
catttaatgaaattaacaatgCATAAATGCCATCCTGAAAACAAATTATA
CCAAGTTAGAGAAATCAGTCGTTTATTTGTTCCCTCGAAAAAGCAAATAC
TATATTATGGTTACGATGCTTCGATTTCAAATGGAGGGGTTCTAACGATT
GGTTCTTTGCTAGCCAACGATACAGGCTCCATGATGCTACATCATTTTAA
ACTGACACCTGAAAACAATTCTGGTGTTTTTATACAGCAACTAGATTGCT
CACACACTATAAGGGCTGATCGGTATAACACGTTGAATCTTGGATGTTAT
AGTAGTTCTGGTGATATATTAATCATCAAACAAAAGTCAGGGATTATCAA
TGATGATTGTTTTCTGGTCAATTTATCATGTTTATCTGAAAATGTTACCA
AATTTCATGGACTTCATTTGTTTTTAGTACGTCATGACTCTAGCGAGTAT
TTGATTTACAACGATAGCTCGTTCATAAATGATAATATGGTCCGAGAAAA
TTTAATCAAAGTTGATGTTGTAACTAGAGAAAAGAATGGGACCTTGTTGT
TTCGGAATATATTAACATTAAACGAAGGTATACTTTATAATATGGTGCTA
CACCATGCTGAATGTTTTGatgattcaaatatttttgccgTTACTAATGA
CAACTATGGAGGCTACTTCGTAATAGATGTATTTGCTAAGAGACTTGTTC
ATATCATAGAGACATCGTTTATGAAAGAGcataatattttttataatttt
catcaGATGAATTGGCGATACGGTGAATTATTTCTGTTATGTTCCAGTTA
TCAAAGATATAACTTGAAATGTATACCATTAGATCAGAGTTTTCCATCAC
TATTTGAACTCGCctgtgaaaaagtttttgagacTTATAATATAAAAGAA
CTGCAGAACATGAATTTGTCGGATAATTTAAAGGCTTTGTTGTATTTACC
GAATGACCAGGAACCTATCAAACACCATAAACCAATAACTTTACCGTCAA
GCTCTACTTTGGTTTAGATTCTTTTATTACTTACAATTACAATTTATTAC
TCGCAAAAACACAATAACTCCAATATTATAGAATAACATACAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016122	XLOC_016122	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00028456-exon-sc0000681-1491911889:62207..62539	TCONS_00028456-exon-sc0000681-1491911889:62207..62539	Clytia hemisphaerica	exon
TCONS_00028456-exon-sc0000681-1510915933:62207..62539	TCONS_00028456-exon-sc0000681-1510915933:62207..62539	Clytia hemisphaerica	exon
TCONS_00028456-exon-sc0000681-1575043694:62207..62539	TCONS_00028456-exon-sc0000681-1575043694:62207..62539	Clytia hemisphaerica	exon
TCONS_00028456-exon-sc0000681-1491911889:67113..68599	TCONS_00028456-exon-sc0000681-1491911889:67113..68599	Clytia hemisphaerica	exon
TCONS_00028456-exon-sc0000681-1510915933:67113..68599	TCONS_00028456-exon-sc0000681-1510915933:67113..68599	Clytia hemisphaerica	exon
TCONS_00028456-exon-sc0000681-1575043694:67113..68599	TCONS_00028456-exon-sc0000681-1575043694:67113..68599	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000681	supercontig	sc0000681:62207..68599 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.44604	0.544375	0.398527	0.190973	0	0	9.07583e-08	0.48804	1.22161	5.27628	13.6535	0.930209	2.00121	0.881499	0	0.399066	0	0	0.521015	0	0.363195	0.155369	4.29451	4.40214	0	0.941463	23.8784	27.5348	22.6773	10.8124

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00028456 vs. Swiss-Prot (Human)

BLAST of TCONS_00028456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00028456 (transcript) - C. hemisphaerica