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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028457 ID=TCONS_00028457|Name=TCONS_00028457|organism=Clytia hemisphaerica|type=transcript|length=1653bp
NNTCCGTACGCATGGTCGTAATCATCGTCACTTTCAAGAAGGTTTAGATA
TTCCATATCCAATGCTAAGAATTCAGACTTCAAATCGACGAGAGAATCCC
TTAAGGTTTTCAGAGCTCCAAGGACTGTCACTTGTTTTGACTCTTCAAGT
TGATCTAGCTGCGAAAGATGTTTCTCGATGTCATCGATGTAGTGATGACA
AGTCGATTTCTTACCATTTCGTTTTCGACGAGCGAGTCTCAATGTCTTGT
CATCTTCAGTTTCAGACATGATACAATATTTGAATAGATAAGACAGTTAT
GGTATGTTCACAcaacaaaaatgtgaaaaaatgaagttttttggCCTTGT
CCACACGACAATCCAAAGACGTCTCCACGAGACAAAAagagaaatgaatt
ttatggcTTTGTCTACACGACAATCCAAAAGACGTCTCCACGAGACAAAA
AAGGGAAGAATGAAATGTTATGGCCTTGTCCACACGACAATCCAAATGAG
GTCTCCACGAGACAAAAGGAGAAATGAACTTTATGGCCTTGTCTTCACGA
CAATCCAGAGACGTCTCCACGagacaaaaaaagaaatgaattttatggcC
TTGTCTTCACGACAATCCAAAAGACGTCTCCACGAGACAGAAAAAACACA
AAGTTGTAGGAAAATTCAGATTCATTTAGAACACTCACAGTAAATTGATC
CAATTAAATAAATTGAGAGATCAAAAGGAGAAAGGTGGTTCACAATTTTC
ACTTCTTTTAAACAAaggaaaagagaagaaaatcaaTCACAATATCCTTT
TGTTAAAGAATctctgaaaattattttagaaatcCTTGAGAGAATTTTGT
TGATAAGAGAGAGGGAAAATNATTTTGTAAAAGAGAAAGACCTTCAGACA
AattatttgaatgttttgagATATTTCAGAGTCTAATTTCAAAACCAGTG
ACCCGAAGATACTCACAAAGAGGTGTCGAGCGACTCTCACTACAATCAAC
TGAGCCAGACAGAACAAACACCGATAGAAGGAAACATTTTGCAACAATTT
TGGGGGTTTCTTGAGCAAATAGGTTTAATAAACTATCAAGAACAAAAATA
GATGGAATGCACCCTCCCAAATGATTATCCATAGATGGATGTCATAAATA
AAAAGGGAAACAATAAAATGCCTTGCTGAAAAACAGCGTAAATACAAAGT
ATCCCCCTTGAACTGCTGTAAAAAAGGAGTGAGGACTGTAATTTAGAAAA
TACTTACCATATTAGTGATGTTTTGTTCGGTGGACCATGTACAAATTGTT
GGGTTGGATTAAAGTGAAGCGATTGATATAGTAGTTTATGATTCTTTACA
TAATATAAAGTCTAAGACATCTGATATCTACAGTGTTCAGTGAGAGAAGG
CTCGAGCTAATCTCGATCTCCccgtaaaatataaaataacaatagaaaac
aaagtcgatataATCTATTCCGCCTCATCCGCCCGACGGCTCATTCCGAT
TATCGTGAAACTGTAAGCGCGCGAAAAGCCCGCAGATTATGTAACAGATG
TAAGAATCTTTAcagtctgtgacacaggggtgcagtgccgtaggaagcat
tttcatattgaggggactgaagtttagtgacaccgccagggctagactag
taa Run BLAST on NCBI protein sequence of TCONS_00028457-protein >TCONS_00028457-protein ID=TCONS_00028457-protein|Name=TCONS_00028457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MFTQQKCEKMKFFGLVHTTIQRRLHETKREMNFMALSTRQSKRRLHETKK
GRMKCYGLVHTTIQMRSPRDKRRNELYGLVFTTIQRRLHETKKEMNFMAL
SSRQSKRRLHETEKTQSCRKIQIHLEHSQ Run BLAST on NCBI transcript from alignment at sc0000681:84608..86391+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028457 ID=TCONS_00028457|Name=TCONS_00028457|organism=Clytia hemisphaerica|type=transcript|length=1784bp|location=Sequence derived from alignment at sc0000681:84608..86391+ (Clytia hemisphaerica)
NNTCCGTACGCATGGTCGTAATCATCGTCACTTTCAAGAAGGTTTAGATA
TTCCATATCCAATGCTAAGAATTCAGACTTCAAATCGACGAGAGAATCCC
TTAAGGTTTTCAGAGCTCCAAGGACTGTCACTTGTTTTGACTCTTCAAGT
TGATCTAGCTGCGAAAGATGTTTCTCGATGTCATCGATGTAGTGATGACA
AGTCGATTTCTTACCATTTCGTTTTCGACGAGCGAGTCTCAATGTCTTGT
CATCTTCAGTTTCAGACATGATACAATATTTGAATAGATAAGACAGTTAT
GGTATGTTCACAcaacaaaaatgtgaaaaaatgaagttttttggCCTTGT
CCACACGACAATCCAAAGACGTCTCCACGAGACAAAAagagaaatgaatt
ttatggcTTTGTCTACACGACAATCCAAAAGACGTCTCCACGAGACAAAA
AAGGGAAGAATGAAATGTTATGGCCTTGTCCACACGACAATCCAAATGAG
GTCTCCACGAGACAAAAGGAGAAATGAACTTTATGGCCTTGTCTTCACGA
CAATCCAGAGACGTCTCCACGagacaaaaaaagaaatgaattttatggcC
TTGTCTTCACGACAATCCAAAAGACGTCTCCACGAGACAGAAAAAACACA
AAGTTGTAGGAAAATTCAGATTCATTTAGAACACTCACAGTAAATTGATC
CAATTAAATAAATTGAGAGATCAAAAGGAGAAAGGTGGTTCACAATTTTC
ACTTCTTTTAAACAAaggaaaagagaagaaaatcaaTCACAATATCCTTT
TGTTAAAGAATctctgaaaattattttagaaatcCTTGAGAGAATTTTGT
TGATAAGAGAGAGGGAAAAATGTTTTGTGAAAGAGAAAGACCTTCAGACA
AattatttgaatgttttgaaatatttcagagTCTAATTTCAAAACCAGTG
ACCCGAAGATACTCACAAAGAGGTGTCGAGCGACTCTCACTACAATCAAC
TNATTTTGTAAAAGAGAAAGACCTTCAGACAAattatttgaatgttttga
gATATTTCAGAGTCTAATTTCAAAACCAGTGACCCGAAGATACTCACAAA
GAGGTGTCGAGCGACTCTCACTACAATCAACTGAGCCAGACAGAACAAAC
ACCGATAGAAGGAAACATTTTGCAACAATTTTGGGGGTTTCTTGAGCAAA
TAGGTTTAATAAACTATCAAGAACAAAAATAGATGGAATGCACCCTCCCA
AATGATTATCCATAGATGGATGTCATAAATAAAAAGGGAAACAATAAAAT
GCCTTGCTGAAAAACAGCGTAAATACAAAGTATCCCCCTTGAACTGCTGT
AAAAAAGGAGTGAGGACTGTAATTTAGAAAATACTTACCATATTAGTGAT
GTTTTGTTCGGTGGACCATGTACAAATTGTTGGGTTGGATTAAAGTGAAG
CGATTGATATAGTAGTTTATGATTCTTTACATAATATAAAGTCTAAGACA
TCTGATATCTACAGTGTTCAGTGAGAGAAGGCTCGAGCTAATCTCGATCT
CCccgtaaaatataaaataacaatagaaaacaaagtcgatataATCTATT
CCGCCTCATCCGCCCGACGGCTCATTCCGATTATCGTGAAACTGTAAGCG
CGCGAAAAGCCCGCAGATTATGTAACAGATGTAAGAATCTTTAcagtctg
tgacacaggggtgcagtgccgtaggaagcattttcatattgaggggactg
aagtttagtgacaccgccagggctagactagtaa Coding sequence (CDS) from alignment at sc0000681:84608..86391+ >TCONS_00028457 ID=TCONS_00028457|Name=TCONS_00028457|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0000681:84608..86391+ (Clytia hemisphaerica)
ATGTTCACAcaacaaaaatgtgaaaaaatgaagttttttggCCTTGTCCA
CACGACAATCCAAAGACGTCTCCACGAGACAAAAagagaaatgaatttta
tggcTTTGTCTACACGACAATCCAAAAGACGTCTCCACGAGACAAAAAAG
GGAAGAATGAAATGTTATGGCCTTGTCCACACGACAATCCAAATGAGGTC
TCCACGAGACAAAAGGAGAAATGAACTTTATGGCCTTGTCTTCACGACAA
TCCAGAGACGTCTCCACGagacaaaaaaagaaatgaattttatggcCTTG
TCTTCACGACAATCCAAAAGACGTCTCCACGAGACAGAAAAAACACAAAG
TTGTAGGAAAATTCAGATTCATTTAGAACACTCACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028457-exon-sc0000681-1491911889:84608..85476 | TCONS_00028457-exon-sc0000681-1491911889:84608..85476 | Clytia hemisphaerica | exon |
| TCONS_00028457-exon-sc0000681-1510915933:84608..85476 | TCONS_00028457-exon-sc0000681-1510915933:84608..85476 | Clytia hemisphaerica | exon |
| TCONS_00028457-exon-sc0000681-1575043694:84608..85476 | TCONS_00028457-exon-sc0000681-1575043694:84608..85476 | Clytia hemisphaerica | exon |
| TCONS_00028457-exon-sc0000681-1491911889:85608..86391 | TCONS_00028457-exon-sc0000681-1491911889:85608..86391 | Clytia hemisphaerica | exon |
| TCONS_00028457-exon-sc0000681-1510915933:85608..86391 | TCONS_00028457-exon-sc0000681-1510915933:85608..86391 | Clytia hemisphaerica | exon |
| TCONS_00028457-exon-sc0000681-1575043694:85608..86391 | TCONS_00028457-exon-sc0000681-1575043694:85608..86391 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000681 | supercontig | sc0000681:84608..86391 + |
Blast
The following BLAST results are available for this feature:
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