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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028466 ID=TCONS_00028466|Name=TCONS_00028466|organism=Clytia hemisphaerica|type=transcript|length=4099bp
AAGCAATCTGCGTTAGTACATACAATATACTCTTCCAACCAGCTTCTGTT
CAACTGGTTCTCCAATAACAACGAATTGCTTTCAATTAACTAAGTAGCTC
TTACACCATTCATACATATCACCAGAAATACCGATTGCGAGTAGCTTTTT
CAGGAGAGTTTCACGGCAAACGCTGTCAAATGCCTTGCTAAAGTCGATTA
GTAAGACACCAATAACCTTGCCATTATCTAGTAAGGTTGACCATCTTCCA
CACATGTGCAGTAACAGTAGCTCCGGTGATCTAACCTTTGAAATCCCCAC
TGATGATTACTGAGGAGCTGGTGGTGATAAACGTGGTCGTCGATATCTGT
TGTGATAAGTGATTCGAGAACTTTTCCTGGTAGGCACAGCAATGATGTAT
GAcgaggtaagagttttttttctaaaattttcagtctggatacccaggcN
ATGGGTCGATAGTTTTCACACTTGGTCTTTGCACCCTTATTTTTGAAGAT
ACACTTAACTTTTGCAACTTAATGGCTGGTTGGAAATACGCAAGTTTCGA
AGCTGGATTTAGCAACGTAGTGGAGTCCTGGTAGGATATCTTCACCAATT
ATCCTGACGATTTTTGAGCTCACTCCATCATGACCTCCAGCTTTGTTTGG
TTTGAATACACCATTAAATGTTCTACTTAGTTTGTAAAAGTTGTAGTTGA
TGTGCGGCAAAGTTGGTGTTACCCGATAGACATGACTTTGCAGTTTGGCG
TTTTCAGGAATTTTGTTTACCTTACCGATGTTTGTGAAGTAGTTGTTCAG
AATTTCACATTTAGCAGAATCGCTTGTGGTCAGGACCCCTTTTTCGTCCT
CAAGGGGACCAATACTGTTCTTTTTGCTCTTACTAATAAATTCGTTTATA
CTGTTCCAAAAGCTCTTACTTGAAGGTGAAATGCCTTGAAATTTCTCTCT
CCAATATTTGGCTTCAGCAGTTTTTTTAGCCCTTCGATAGAGTTTCCATT
CATGTGAGTCTTTGGGTGTCTTTTGGGCCTTTTTCAACAGTTTGAATCTG
ATGTTGAGTTGTTTTCGAATTTGACCATTGATCCATGGATGCGACTTGTG
TCTAATTTTAGCTTTTCGAGTTTTCAGATGTTCGCTCACTACATTCTTGT
ACAATCCTTCCCAAACAAAAAGAGTGTCATCTACATTGTCAAATATGTCG
AAAATTTGCCAGGGAGCTACTGCAATGTCGTTTTTTAATTTAGCAGTATC
AATGTTTTTATAGTTGTAAACAGTTCTTTATATTGGTTTATCTTTTATTT
GAATAGCCGAGAAGGAGCAGTAGATAAGATGATGGTCAGAAATGGCAGGA
TCAATTGAATGGGAATTGTTTATTTTATGTTTGCATCTGGCTGGTACAAT
AATATGATCAATCAGAGTTTTTGAGGTATCTGTTATGCGTGTGGGTTCGT
TAATGGTATTCTGCAAGTTGTGTTTGTACAATAGAGAGTTGAAGAGGTTA
CGAATGGGTGCACTTGATTGGTTCCCATCTTGtcttttgataaaagtgat
catTTTATTTTGAGCCAAATTAACTAAACTAataatctcatttttatacc
aTGGAAGAAGGTAAACTTGAAATAGGACTTTAAATTTGCTAATTTAGAta
aatcataaaatcaaaaacCACAAGAGTACCGAAATTCAgtggctagttcg
aaacacgggtcacgtgTTACATTGAAATTATATTTATTCATACTCAGAGT
GATGCAGGGGATATAATAAGATATGATTTAACAATGGCTGTACTATCGTT
TTCTTGAGAAAGCTCTGTTTTCAGGTGATGGGAATTGTAAAATGTATATT
ACTTACATATCCCATATAACATGCATACAGCACTAAAAGtgtattattga
taatataagcTTGTTACATGTATGTAGTATGTTACGGTGTTTTCTTGTCT
GCGTTGTACACGACGCAAACTTCGAAAGCACGTGGAAAGCACGTGGttag
attttgactttttaaatagTCATACGTGGATAAAACACCTTCAAATCGTT
TTTTTTCAACAAGTTTTAgcgtttttaaaacattttctgtttgaattact
ttgatcaGAGCTGCCCCTTtaccccgtgccccgtgacctCGTAACCCCTG
CCCCGTAACCCATGCCCTGTGACCcggacccgtgtttcgaactagccgga
aGTTCAGTTTTTTTTACCGAATAGTCCATGGTAAAAAGTGCTTGAAAGAT
ACCCTGTTTTAGACCTCCCCTTAAGTGTGTGTCTTTTAATAAAAGGCTCG
ATAATTTCCATAAAATGTTACATTAGATATAATAGGTAATTATGGTATAA
GAACCAAGtatcaattttggcaaaattttatattatgttgcaaaaaaatc
agctgttttgagaaaaatgtcCAGAGAAAACAAAGTCCTGAGAAGACCaa
aatttgtgttccctgtgTCAAAATTAGTACATACATGGGGTGGAGGGAtg
caaaaagcaaaagattcTAGAAAACCCTTTAAGTATTAATTATATAtctg
tctgagattttagtacaaATTCCCCCTCCCCTATTAAAACAAGAATTGAA
GTAAAtgagtgaaaaaatttctgaaatctagATTGAAAAATAGATTCTTC
AACTAAAAAGGTTATGTCGCTAGTTGCAAATTACAGCTGCTCTTCGAGTG
AAGAATCAGAAACTGAGGACGGATCAGAGGAAAAgcaagaaaacagaaaa
gagaaagaaattCCTCCATTTTCGTCAACAGATGGCTCATCAGATGAAGA
AAGTGAATATGAAGTAAACAAACTTCCACTCCCTTCTGCTATCTTCAAAC
AGAAAGGTGAACATAAACTACCCGAATTGAACGTTAATAAACGAAAATTA
TCACAAAATTCAATATTCTCAGATCCTTTTGCACAATCAAATGCAAGTAT
AGAACAGACACTTTCTAAACATAAACGACTTACTGAAACCAAGGATCAGG
AACCAAATAAGCGTCAGAGAAAAAAGCAAGCTAAAGAATCTGAagtaaag
aaaacaaaactttgtgtaaaatttttcaaaagcgGGACTTGTAAATTTGG
AGATAAATGTAAATTTGCTCATAAACTGTTGAGCCAACAAGAACACAGTA
TGGAATTTAAAGAACCAAATATTGTAAGTCAACCAGAccttgttaaaaag
aaaaagaaaaagaacaattttatggcTTCAACGAATGATCCAAATAGTGA
CGATGAAGGACAGTCTATAAGTAAAAAGAAGAGACCAGGGCTTAGTAACA
ATTTAGTACCTGGAAAAAAGGTACTACAAAACTATGATAAACTATGTAGA
GCATATTTACATTTCTaaacattttgtaaatttttctttaaattattAGT
ATTTACATATGTCAATGTTCTTATATTGGGTGCGCCaatagaaaattaat
tttaaagagagaaacttttttgtggcgcacccggtatataagaGGAGATC
CAAATCTGTTAACTTAATCTGTCTCCTTAATTTGAACAAACTCTCTGACC
TCTTCTGCTCAAATGCCTGTAAACATATCTCTGTGACTCTTAAGCGAAAC
AAGTTTGTGTTCTCTGAGAGTTTTTGAGTTTATATAAACCCTCTTCACTC
TATTTAGATTTTTAATCTGGCTCTGTTATCCTTTGATcgtgttcaaaaat
aaaggcctgttttgtgacattttcaaagtggctgacaattttgttaataa
aatgagtatttttggtggttaacagtttattttttcaccaagCATAAGTA
GAACGATTAACCTTTCCAATTGTTTTGGAGCGAAATTAAGTGGCTCACTA
GGTTACAAGATATTTCAAGATAAGCTATGAGTCGTTTATGTGGCTGACAA
AACACATATTTGGACATATTTGGACCTGGAGCCACacattttactcattt
tctatttttttcatcaaaatatgttctttgtgtaaataccgatcatcata
taaaatttcaacgttttatttgaaatatttcccaagttattcaagaaata
ctatatttttatcaatttttgagttccctaaatgtcacactatttttga Run BLAST on NCBI protein sequence of TCONS_00028466-protein >TCONS_00028466-protein ID=TCONS_00028466-protein|Name=TCONS_00028466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MSLVANYSCSSSEESETEDGSEEKQENRKEKEIPPFSSTDGSSDEESEYE
VNKLPLPSAIFKQKGEHKLPELNVNKRKLSQNSIFSDPFAQSNASIEQTL
SKHKRLTETKDQEPNKRQRKKQAKESEVKKTKLCVKFFKSGTCKFGDKCK
FAHKLLSQQEHSMEFKEPNIVSQPDLVKKKKKKNNFMASTNDPNSDDEGQ
SISKKKRPGLSNNLVPGKKVLQNYDKLCRAYLHF Run BLAST on NCBI transcript from alignment at sc0000681:42429..46716- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028466 ID=TCONS_00028466|Name=TCONS_00028466|organism=Clytia hemisphaerica|type=transcript|length=4288bp|location=Sequence derived from alignment at sc0000681:42429..46716- (Clytia hemisphaerica)
AAGCAATCTGCGTTAGTACATACAATATACTCTTCCAACCAGCTTCTGTT
CAACTGGTTCTCCAATAACAACGAATTGCTTTCAATTAACTAAGTAGCTC
TTACACCATTCATACATATCACCAGAAATACCGATTGCGAGTAGCTTTTT
CAGGAGAGTTTCACGGCAAACGCTGTCAAATGCCTTGCTAAAGTCGATTA
GTAAGACACCAATAACCTTGCCATTATCTAGTAAGGTTGACCATCTTCCA
CACATGTGCAGTAACAGTAGCTCCGGTGATCTAACCTTTGAAATCCCCAC
TGATGATTACTGAGGAGCTGGTGGTGATAAACGTGGTCGTCGATATCTGT
TGTGATAAGTGATTCGAGAACTTTTCCTGGTAGGCACAGCAATGATGTAT
GACGAGGTAAGAGTTTTTTTTCTAAAATTTTCAGTCTGGATACCCAGGCN
ATGGGTCGATAGTTTTCACACTTGGTCTTTGCACCCTTATTTTTGAAGAT
ACACTTAACTTTTGCAACTTAATGGCTGGTTGGAAATACGCAAGTTTCGA
AGCTGGATTTAGCAACGTAGTGGAGTCCTGGTAGGATATCTTCACCAATT
ATCCTGACGATTTTTGAGCTCACTCCATCATGACCTCCAGCTTTGTTTGG
TTTGAATACACCATTAAATGTTCTACTTAGTTTGTAAAAGTTGTAGTTGA
TGTGCGGCAAAGTTGGTGTTACCCGATAGACATGACTTTGCAGTTTGGCG
TTTTCAGGNAGCAAAGTTGGTGTTACCTGATAGACATGACTTTGCAGTTT
GGCGTTTTCAGGAATTTTGTTTACCTTACCGATGTTTGTGAAGTAGTTGT
TCAGAATTTCACATTTAGCAGAATCGCTTGTGGTCAGGACCCCTTTTTCG
TCCTCAAGGGGACCAATACTGTTCTTTTTGCTCTTACTAATAAATTCGTT
TATACTGTTCCAAAAGCTCTTACTTGAAGGTGAAATGCCTTGAAATTTCT
CTCTCCAATATTTGGCTTCAGCAGTTTTTTTAGCCCTTCGATAGAGTTTC
CATTCATGTGAGTCTTTGGGTGTCTTTTGGGCCTTTTTCAACAGTTTGAA
TCTGATGTTGAGTTGTTTTCGAATTTGACCATTGATCCATGGATGCGACT
TGTGTCTAATTTTAGCTTTTCGAGTTTTCAGATGTTCGCTCACTACATTC
TTGTACAATCCTTCCCAAACAAAAAGAGTGTCATCTACATTGTCAAATAT
GTCGAAAATTTGCCAGGGAGCTACTGCAATGTCGTTTTTTAATTTAGCAG
TATCAATGTTTTTATAGTTGTAAACAGTTCTTTATATTGGTTTATCTTTT
ATTTGAATAGCCGAGAAGGAGCAGTAGATAAGATGATGGTCAGAAATGGC
AGGATCAATTGAATGGGAATTGTTTATTTTATGTTTGCATCTGGCTGGTA
CAATAATATGATCAATCAGAGTTTTTGAGGTATCTGTTATGCGTGTGGGT
TCGTTAATGGTATTCTGCAAGTTGTGTTTGTACAATAGAGAGTTGAAGAG
GTTACGAATGGGTGCACTTGATTGGTTCCCATCTTGTCTTTTGATAAAAG
TGATCATTTTATTTTGAGCCAAATTAACTAAACTAATAATCTCATTTTTA
TACCATGGAAGAAGGTAAACTTGAAATAGGACTTTAAATTTGCTAATTTA
GATAAATCATAAAATCAAAAACCACAAGAGTACCGAAATTCAGTGGCTAG
TTCGAAACACGGGTCACGTGTTACATTGAAATTATATTTATTCATACTCA
GAGTGATGCAGGGGATATAATAAGATATGATTTAACAATGGCTGTACTAT
CGTTTTCTTGAGAAAGCTCTGTTTTCAGGTGATGGGAATTGTAAAATGTA
TATTACTTACATATCCCATATAACATGCATACAGCACTAAAAGTGTATTA
TTGATAATATAAGCTTGTTACATGTATGTAGTATGTTACGGTGTTTTCTT
GTCTGCGTTGTACACGACGCAAACTTCGAAAGCACGTGGAAAGCACGTGG
TTAGATTTTGACTTTTTAAATAGTCATACGTGGATAAAACACCTTCAAAT
CGTTTTTTTTCAACAAGTTTTAGCGTTTTTAAAACATTTTCTGTTTGAAT
TACTTTGATCAGAGCTGCCCCTTTACCCCGTGCCCCGTGACCTCGTAACC
CCTGCCCCGTAACCCATGCCCTGTGACCCGGACCCGTGTTTCGAACTAGC
CGGAAGTTCAGTTTTTTTTACCGAATAGTCCATGGTAAAAAGTGCTTGAA
AGATACCCTGTTTTAGACCTCCCCTTAAGTGTGTGTCTTTTAATAAAAGG
CTCGATAATTTCCATAAAATGTTACATTAGATATAATAGGTAATTATGGT
ATAAGAACCAAGTATCAATTTTGGCAAAATTTTATATTATGTTGCAAAAA
AATCAGCTGTTTTGAGAAAAATGTCCAGAGAAAACAAAGTCCTGAGAAGA
CCAAAATTTGTGTTCCCTGTGTCAAAATTAGTACATACATGGGGTGGAGG
GATGCAAAAAGCAAAAGATTCTAGAAAACCCTTTAAGTATTAATTATATA
TCTGTCTGAGATTTTAGTACAAATTCCCCCTCCCCTATTAAAACAAGAAT
TGAAGTAAATGAGTGAAAAAATTTCTGAAATCTAGATTGAAAAATAGATT
CTTCAACTAAAAAGGTTATGTCGCTAGTTGCAAATTACAGCTGCTCTTCG
AGTGAAGAATCAGAAACTGAGGACGGATCAGAGGAAAAGCAAGAAAACAG
AAAAGAGAAAGAAATTCCTCCATTTTCGTCAACAGATGGCTCATCAGATG
AAGAAAGTGAATATGAAGTAAACAAACTTCCACTCCCTTCTGCTATCTTC
AAACAGAAAGGTGAACATAAACTACCCGAATTGAACGTTAATAAACGAAA
ATTATCACAAAATTCAATATTCTCAGATCCTTTTGCACAATCAAATGCAA
GTATAGAACAGACACTTTCTAAACATAAACGACTTACTGAAACCAAGGAT
CAGGAACCAAATAAGCGTCAGAGAAAAAAGCAAGCTAAAGAATCTGAAGT
AAAGAAAACAAAACTTTGTGTAAAATTTTTCAAAAGCGGGACTTGTAAAT
TTGGAGATAAATGTAAATTTGCTCATAAACTGTTGAGCCAACAAGAACAC
AGTATGGAATTTAAAGAACCAAATATTGTAAGTCAACCAGACCTTGTTAA
AAAGAAAAAGAAAAAGAACAATTTTATGGCTTCAACGAATGATCCAAATA
GTGACGATGAAGGACAGTCTATAAGTAAAAAGAAGAGACCAGGGCTTAGT
AACAATTTAGTACCTGGAAAAAAGGTACTACAAAACTATGATAAACTATG
TAGAGCATATTTACATTTCTAAACATTTTGTAAATTTTTCTTTAAATTAT
TAGTATTTACATATGTCAATGTTCTTATATTGGGTGCGCCAATAGAAAAT
TAATTTTAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTATATAAGAGGA
GATCCAAATCTGTTAACTTAATCTGTCTCCTTAATTTGAACAAACTCTCT
GACCTCTTCTGCTCAAATGCCTGTAAACATATCTCTGTGACTCTTAAGCG
AAACAAGTTTGTGTTCTCTGAGAGTTTTTGAGTTTATATAAACCCTCTTC
ACTCTATTTAGATTTTTAATCTGGCTCTGTTATCCTTTGATCGTGTTCAA
AAATAAAGGCCTGTTTTGTGACATTTTCAAAGTGGCTGACAATTTTGTTA
ATAAAATGAGTATTTTTGGTGGTTAACAGTTTATTTTTTCACCAAGCATA
AGTAGAACGATTAACCTTTCCAATTGTTTTGGAGCGAAATTAAGTGGCTC
ACTAGGTTACAAGATATTTCAAGATAAGCTATGAGTCGTTTATGTGGCTG
CCAACACTGGTGGCTTTTTGAAACCAACCAGTTTCAAAATGTTGCTCCTT
TATCTGTTTTGAGATAATACGATACCTCTAGTTAGCGATTCAAGTGTCAT
TTTCAAACAAACCATTTCCTCCTTTGAGGTGGCTGACAAAACACATATTT
GGACATATTTGGACCTGGAGCCACACATTTTACTCATTTTCTATTTTTTT
CATCAAAATATGTTCTTTGTGTAAATACCGATCATCATATAAAATTTCAA
CGTTTTATTTGAAATATTTCCCAAGTTATTCAAGAAATACTATATTTTTA
TCAATTTTTGAGTTCCCTAAATGTCACACTATTTTTGA Coding sequence (CDS) from alignment at sc0000681:42429..46716- >TCONS_00028466 ID=TCONS_00028466|Name=TCONS_00028466|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000681:42429..46716- (Clytia hemisphaerica)
ATGTCGCTAGTTGCAAATTACAGCTGCTCTTCGAGTGAAGAATCAGAAAC
TGAGGACGGATCAGAGGAAAAGCAAGAAAACAGAAAAGAGAAAGAAATTC
CTCCATTTTCGTCAACAGATGGCTCATCAGATGAAGAAAGTGAATATGAA
GTAAACAAACTTCCACTCCCTTCTGCTATCTTCAAACAGAAAGGTGAACA
TAAACTACCCGAATTGAACGTTAATAAACGAAAATTATCACAAAATTCAA
TATTCTCAGATCCTTTTGCACAATCAAATGCAAGTATAGAACAGACACTT
TCTAAACATAAACGACTTACTGAAACCAAGGATCAGGAACCAAATAAGCG
TCAGAGAAAAAAGCAAGCTAAAGAATCTGAAGTAAAGAAAACAAAACTTT
GTGTAAAATTTTTCAAAAGCGGGACTTGTAAATTTGGAGATAAATGTAAA
TTTGCTCATAAACTGTTGAGCCAACAAGAACACAGTATGGAATTTAAAGA
ACCAAATATTGTAAGTCAACCAGACCTTGTTAAAAAGAAAAAGAAAAAGA
ACAATTTTATGGCTTCAACGAATGATCCAAATAGTGACGATGAAGGACAG
TCTATAAGTAAAAAGAAGAGACCAGGGCTTAGTAACAATTTAGTACCTGG
AAAAAAGGTACTACAAAACTATGATAAACTATGTAGAGCATATTTACATT
TCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028466-exon-sc0000681-1575043694:45960..46716 | TCONS_00028466-exon-sc0000681-1575043694:45960..46716 | Clytia hemisphaerica | exon |
| TCONS_00028466-exon-sc0000681-1575043694:42774..45905 | TCONS_00028466-exon-sc0000681-1575043694:42774..45905 | Clytia hemisphaerica | exon |
| TCONS_00028466-exon-sc0000681-1575043694:42429..42638 | TCONS_00028466-exon-sc0000681-1575043694:42429..42638 | Clytia hemisphaerica | exon |
| TCONS_00028466-exon-sc0000681-1510915933:45960..46716 | TCONS_00028466-exon-sc0000681-1510915933:45960..46716 | Clytia hemisphaerica | exon |
| TCONS_00028466-exon-sc0000681-1510915933:42774..45905 | TCONS_00028466-exon-sc0000681-1510915933:42774..45905 | Clytia hemisphaerica | exon |
| TCONS_00028466-exon-sc0000681-1510915933:42429..42638 | TCONS_00028466-exon-sc0000681-1510915933:42429..42638 | Clytia hemisphaerica | exon |
| TCONS_00028466-exon-sc0000681-1491911889:45960..46716 | TCONS_00028466-exon-sc0000681-1491911889:45960..46716 | Clytia hemisphaerica | exon |
| TCONS_00028466-exon-sc0000681-1491911889:42774..45905 | TCONS_00028466-exon-sc0000681-1491911889:42774..45905 | Clytia hemisphaerica | exon |
| TCONS_00028466-exon-sc0000681-1491911889:42429..42638 | TCONS_00028466-exon-sc0000681-1491911889:42429..42638 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000681 | supercontig | sc0000681:42429..46716 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000571 | Znf_CCCH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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