TCONS_00028479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028479
Unique NameTCONS_00028479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028479 ID=TCONS_00028479|Name=TCONS_00028479|organism=Clytia hemisphaerica|type=transcript|length=661bp
CAAACTCAAAACAATAGTCTAGTTTTGTCGGATGCAGTGCCAATAAAGTT
GAATGAGGCTTCAATAGGTGTGCTAGCTGTATATCAGAAGAATTATTTCT
TGGATGGTGGGGTATATCTTGAGGGGGTACAAATCTGAAAGTGAAATTGC
TAGGAAAACCGGAATTAGTTTCATTTCCTGCATGTCCAAAACTTACAAAC
AGGAAATCTTTAGTGATGTATTGTGGATAACGCATAACTCTATGTATGTC
TTTATACCATTCCGTATACGATGGATATAACTCTTTCCCAGTCTTTTTTC
CGATGAAATACTTCTCAGCTCCCCATATTAATGGATAGTGTGGAGAAACA
AATGTTTGACCAGACTTGCCCTCAGTAGCGGTTTCTGCAACAGTAGCAAC
ACTGGCTTCAAGCTTTTCTACTTTCATTTCCAAACGCTTTACTTTCTCTT
TCAAAGATTTCACTTCTTTTTCCAAACATATCTCTTTCGACTCCCCTTCC
TGAGGGCGTTGAGTTTCTTTTCTCTGTAACGCCCTCTCCTGTAGTCGGTT
TTTGTAATTGTTGAAATTTCTTTGTGGCACATTAGTAGTATTCACAACAC
GACCATTTTCTCTTGGGTTCCATCTGTCTGCACTCATTTTGTTACTGTTT
TAACAGCACAC
Run BLAST on NCBI

protein sequence of TCONS_00028479-protein

>TCONS_00028479-protein ID=TCONS_00028479-protein|Name=TCONS_00028479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MSADRWNPRENGRVVNTTNVPQRNFNNYKNRLQERALQRKETQRPQEGES
KEICLEKEVKSLKEKVKRLEMKVEKLEASVATVAETATEGKSGQTFVSPH
YPLIWGAEKYFIGKKTGKELYPSYTEWYKDIHRVMRYPQYITKDFLFVSF
GHAGNETNSGFPSNFTFRFVPPQDIPHHPRNNSSDIQLAHLLKPHSTLLA
LHPTKLDYCFEF
Run BLAST on NCBI

transcript from alignment at sc0000681:143331..143991

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028479 ID=TCONS_00028479|Name=TCONS_00028479|organism=Clytia hemisphaerica|type=transcript|length=661bp|location=Sequence derived from alignment at sc0000681:143331..143991 (Clytia hemisphaerica)
GTGTGCTGTTAAAACAGTAACAAAATGAGTGCAGACAGATGGAACCCAAG
AGAAAATGGTCGTGTTGTGAATACTACTAATGTGCCACAAAGAAATTTCA
ACAATTACAAAAACCGACTACAGGAGAGGGCGTTACAGAGAAAAGAAACT
CAACGCCCTCAGGAAGGGGAGTCGAAAGAGATATGTTTGGAAAAAGAAGT
GAAATCTTTGAAAGAGAAAGTAAAGCGTTTGGAAATGAAAGTAGAAAAGC
TTGAAGCCAGTGTTGCTACTGTTGCAGAAACCGCTACTGAGGGCAAGTCT
GGTCAAACATTTGTTTCTCCACACTATCCATTAATATGGGGAGCTGAGAA
GTATTTCATCGGAAAAAAGACTGGGAAAGAGTTATATCCATCGTATACGG
AATGGTATAAAGACATACATAGAGTTATGCGTTATCCACAATACATCACT
AAAGATTTCCTGTTTGTAAGTTTTGGACATGCAGGAAATGAAACTAATTC
CGGTTTTCCTAGCAATTTCACTTTCAGATTTGTACCCCCTCAAGATATAC
CCCACCATCCAAGAAATAATTCTTCTGATATACAGCTAGCACACCTATTG
AAGCCTCATTCAACTTTATTGGCACTGCATCCGACAAAACTAGACTATTG
TTTTGAGTTTG

Coding sequence (CDS) from alignment at sc0000681:143331..143991

>TCONS_00028479 ID=TCONS_00028479|Name=TCONS_00028479|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000681:143331..143991 (Clytia hemisphaerica)
ATGAGTGCAGACAGATGGAACCCAAGAGAAAATGGTCGTGTTGTGAATAC
TACTAATGTGCCACAAAGAAATTTCAACAATTACAAAAACCGACTACAGG
AGAGGGCGTTACAGAGAAAAGAAACTCAACGCCCTCAGGAAGGGGAGTCG
AAAGAGATATGTTTGGAAAAAGAAGTGAAATCTTTGAAAGAGAAAGTAAA
GCGTTTGGAAATGAAAGTAGAAAAGCTTGAAGCCAGTGTTGCTACTGTTG
CAGAAACCGCTACTGAGGGCAAGTCTGGTCAAACATTTGTTTCTCCACAC
TATCCATTAATATGGGGAGCTGAGAAGTATTTCATCGGAAAAAAGACTGG
GAAAGAGTTATATCCATCGTATACGGAATGGTATAAAGACATACATAGAG
TTATGCGTTATCCACAATACATCACTAAAGATTTCCTGTTTGTAAGTTTT
GGACATGCAGGAAATGAAACTAATTCCGGTTTTCCTAGCAATTTCACTTT
CAGATTTGTACCCCCTCAAGATATACCCCACCATCCAAGAAATAATTCTT
CTGATATACAGCTAGCACACCTATTGAAGCCTCATTCAACTTTATTGGCA
CTGCATCCGACAAAACTAGACTATTGTTTTGAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016130XLOC_016130Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028479-proteinTCONS_00028479-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028479-exon-sc0000681-1491911889:143331..143991TCONS_00028479-exon-sc0000681-1491911889:143331..143991Clytia hemisphaericaexon
TCONS_00028479-exon-sc0000681-1510915933:143331..143991TCONS_00028479-exon-sc0000681-1510915933:143331..143991Clytia hemisphaericaexon
TCONS_00028479-exon-sc0000681-1575043694:143331..143991TCONS_00028479-exon-sc0000681-1575043694:143331..143991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000681supercontigsc0000681:143331..143991 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0784906	0	0.622097	0.608625	0	0.0836433	0	0.0944726	0.462998	0.327713	0.397607	0.73184	2.97549	2.76481	8.11166	7.84411	5.65657	5.67701	4.42217	3.66706	2.1249	2.10992	2.1599	2.20912	0.421359	0.827317	0.430505	0.574308	2.61355	0.887599
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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