TCONS_00028494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028494
Unique NameTCONS_00028494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028494 ID=TCONS_00028494|Name=TCONS_00028494|organism=Clytia hemisphaerica|type=transcript|length=657bp
TGACAAACCCAAATCCAGTTTCTTTTGAGATTGCACATCCTTCACATGAA
AAAGTTCTCAATGTCATTAACAAATTATCAGATTCCAAATCTGTTGGACC
AAACAGTATTCCAACACAGATCCTAAAAATTATAGCACCCCACATTACCA
ATGATCTTTCTAATCGAATTAATGAATGCATCGATGTAAATAACTTTCCT
GAATGCTTAAAAAAAGCCACTGTCACTCCCGTACACAAGAAAGACTCAAA
ATTAAACGTGGAAAATTACAGACCAATATCACTCTTATCAAAtgtgagca
aaatttttgaaaaattacttcatGAACAAATCTATTCATTCTTTGAGACT
CACGATATCCTCTACAAAAATCAATTTGGATTTAGAAAGAACCATAACAC
GTCTCATGCTATCTCTGCTCTTACTGAAGAAATTAGAGCAGCCCTTGATC
AAAATGAGTTTGCAGTGGGAATATTTGTAGACCTCTAAAAGGCATTTGAC
ACCGTTGGCcatgaaattttattaaataaacTTGAACACTATGGTATCAG
GAATGGTCCTCTGGCACTTTTTCGATCCTATCTTACAAATCGGGAACAGT
GTGTTAGAATACGAAACAATTACTCAACTTTCAAATAAGTCAAGCATGGA
GTTCCCC
Run BLAST on NCBI

protein sequence of TCONS_00028494-protein

>TCONS_00028494-protein ID=TCONS_00028494-protein|Name=TCONS_00028494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
TNPNPVSFEIAHPSHEKVLNVINKLSDSKSVGPNSIPTQILKIIAPHITN
DLSNRINECIDVNNFPECLKKATVTPVHKKDSKLNVENYRPISLLSNVSK
IFEKLLHEQIYSFFETHDILYKNQFGFRKNHNTSHAISALTEEIRAALDQ
NEFAVGIFVDL
Run BLAST on NCBI

transcript from alignment at sc0000682:143666..144322

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028494 ID=TCONS_00028494|Name=TCONS_00028494|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at sc0000682:143666..144322 (Clytia hemisphaerica)
GGGGAACTCCATGCTTGACTTATTTGAAAGTTGAGTAATTGTTTCGTATT
CTAACACACTGTTCCCGATTTGTAAGATAGGATCGAAAAAGTGCCAGAGG
ACCATTCCTGATACCATAGTGTTCAAgtttatttaataaaatttcatgGC
CAACGGTGTCAAATGCCTTTTAGAGGTCTACAAATATTCCCACTGCAAAC
TCATTTTGATCAAGGGCTGCTCTAATTTCTTCAGTAAGAGCAGAGATAGC
ATGAGACGTGTTATGGTTCTTTCTAAATCCAAATTGATTTTTGTAGAGGA
TATCGTGAGTCTCAAAGAATGAATAGATTTGTTCatgaagtaatttttca
aaaattttgctcacaTTTGATAAGAGTGATATTGGTCTGTAATTTTCCAC
GTTTAATTTTGAGTCTTTCTTGTGTACGGGAGTGACAGTGGCTTTTTTTA
AGCATTCAGGAAAGTTATTTACATCGATGCATTCATTAATTCGATTAGAA
AGATCATTGGTAATGTGGGGTGCTATAATTTTTAGGATCTGTGTTGGAAT
ACTGTTTGGTCCAACAGATTTGGAATCTGATAATTTGTTAATGACATTGA
GAACTTTTTCATGTGAAGGATGTGCAATCTCAAAAGAAACTGGATTTGGG
TTTGTCA

Coding sequence (CDS) from alignment at sc0000682:143666..144322

>TCONS_00028494 ID=TCONS_00028494|Name=TCONS_00028494|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000682:143666..144322 (Clytia hemisphaerica)
TTAGAGGTCTACAAATATTCCCACTGCAAACTCATTTTGATCAAGGGCTG
CTCTAATTTCTTCAGTAAGAGCAGAGATAGCATGAGACGTGTTATGGTTC
TTTCTAAATCCAAATTGATTTTTGTAGAGGATATCGTGAGTCTCAAAGAA
TGAATAGATTTGTTCatgaagtaatttttcaaaaattttgctcacaTTTG
ATAAGAGTGATATTGGTCTGTAATTTTCCACGTTTAATTTTGAGTCTTTC
TTGTGTACGGGAGTGACAGTGGCTTTTTTTAAGCATTCAGGAAAGTTATT
TACATCGATGCATTCATTAATTCGATTAGAAAGATCATTGGTAATGTGGG
GTGCTATAATTTTTAGGATCTGTGTTGGAATACTGTTTGGTCCAACAGAT
TTGGAATCTGATAATTTGTTAATGACATTGAGAACTTTTTCATGTGAAGG
ATGTGCAATCTCAAAAGAAACTGGATTTGGGTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016144XLOC_016144Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028494-proteinTCONS_00028494-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028494-exon-sc0000682-1491911889:143666..144322TCONS_00028494-exon-sc0000682-1491911889:143666..144322Clytia hemisphaericaexon
TCONS_00028494-exon-sc0000682-1510915933:143666..144322TCONS_00028494-exon-sc0000682-1510915933:143666..144322Clytia hemisphaericaexon
TCONS_00028494-exon-sc0000682-1575043694:143666..144322TCONS_00028494-exon-sc0000682-1575043694:143666..144322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000682supercontigsc0000682:143666..144322 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.395957	0.0772241	0.537987	0.350891	0.106794	0.0843901	0.305439	0.381264	0	0.247979	0.160463	0.105482	0.948019	1.14861	0.449675	0.289542	0.713384	0.243732	0.336729	0.264272	0.306267	0.11204	0.0907993	0.0825497	0	0.227646	1.62881	2.6654	0.70317	0.447762
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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