TCONS_00028508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028508
Unique NameTCONS_00028508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028508 ID=TCONS_00028508|Name=TCONS_00028508|organism=Clytia hemisphaerica|type=transcript|length=595bp
CCTTCGTATTTGGCACTTAGTTTATCACGAAATCTACGAAGAGTGTATCC
GTTCTCGTTGAATTCAAGGAGCTTTTCGTGAAGTTCTTGTATTGTGTAGC
TTTCACAATCCATCATGTTTTCGAAGTGATGACAAAACATCTCGAACGCT
TCAGACATTTCTATATTTTCAGGTCTGCCTTTTTTAAGCTTCGGGGCTTC
GTGTAAGCAGAAATCCATCATACAATAGCAGTGGTATCTTGCCTCTTCTG
CTGGCAAATCTATGCATGTTTGCAATCTTCCATTAACTTCTTCTCCCCAG
TCGTCCTTCCGGTTTAATGCAGCCTCCAAAACAATTTTGCGCTTCTCGAT
TATCTCGACTTCCTTGTAATCATCATTTTTACTATCACATGGTTTGGCAC
ATAAAAAGCAATCTTTCTTCCAATTGAAAACTCTATCCAACGAAGATCGT
AGTCGTTTTGGAGGAAGGGTTTTGATTGGAATCGTTCTTTTGTCAGTTAG
GCGTTTACGACACTTTTCATGCACGAAAATTTTGGACTCTTTAGCTGACA
GATTTTTGATCTCTTGTAACAGCCCACTCTCTCCTTTCTTGCCGC
Run BLAST on NCBI

protein sequence of TCONS_00028508-protein

>TCONS_00028508-protein ID=TCONS_00028508-protein|Name=TCONS_00028508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
GKKGESGLLQEIKNLSAKESKIFVHEKCRKRLTDKRTIPIKTLPPKRLRS
SLDRVFNWKKDCFLCAKPCDSKNDDYKEVEIIEKRKIVLEAALNRKDDWG
EEVNGRLQTCIDLPAEEARYHCYCMMDFCLHEAPKLKKGRPENIEMSEAF
EMFCHHFENMMDCESYTIQELHEKLLEFNENGYTLRRFRDKLSAKYE
Run BLAST on NCBI

transcript from alignment at sc0000683:70421..71015

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028508 ID=TCONS_00028508|Name=TCONS_00028508|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0000683:70421..71015 (Clytia hemisphaerica)
GCGGCAAGAAAGGAGAGAGTGGGCTGTTACAAGAGATCAAAAATCTGTCA
GCTAAAGAGTCCAAAATTTTCGTGCATGAAAAGTGTCGTAAACGCCTAAC
TGACAAAAGAACGATTCCAATCAAAACCCTTCCTCCAAAACGACTACGAT
CTTCGTTGGATAGAGTTTTCAATTGGAAGAAAGATTGCTTTTTATGTGCC
AAACCATGTGATAGTAAAAATGATGATTACAAGGAAGTCGAGATAATCGA
GAAGCGCAAAATTGTTTTGGAGGCTGCATTAAACCGGAAGGACGACTGGG
GAGAAGAAGTTAATGGAAGATTGCAAACATGCATAGATTTGCCAGCAGAA
GAGGCAAGATACCACTGCTATTGTATGATGGATTTCTGCTTACACGAAGC
CCCGAAGCTTAAAAAAGGCAGACCTGAAAATATAGAAATGTCTGAAGCGT
TCGAGATGTTTTGTCATCACTTCGAAAACATGATGGATTGTGAAAGCTAC
ACAATACAAGAACTTCACGAAAAGCTCCTTGAATTCAACGAGAACGGATA
CACTCTTCGTAGATTTCGTGATAAACTAAGTGCCAAATACGAAGG

Coding sequence (CDS) from alignment at sc0000683:70421..71015

>TCONS_00028508 ID=TCONS_00028508|Name=TCONS_00028508|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0000683:70421..71015 (Clytia hemisphaerica)
GGCAAGAAAGGAGAGAGTGGGCTGTTACAAGAGATCAAAAATCTGTCAGC
TAAAGAGTCCAAAATTTTCGTGCATGAAAAGTGTCGTAAACGCCTAACTG
ACAAAAGAACGATTCCAATCAAAACCCTTCCTCCAAAACGACTACGATCT
TCGTTGGATAGAGTTTTCAATTGGAAGAAAGATTGCTTTTTATGTGCCAA
ACCATGTGATAGTAAAAATGATGATTACAAGGAAGTCGAGATAATCGAGA
AGCGCAAAATTGTTTTGGAGGCTGCATTAAACCGGAAGGACGACTGGGGA
GAAGAAGTTAATGGAAGATTGCAAACATGCATAGATTTGCCAGCAGAAGA
GGCAAGATACCACTGCTATTGTATGATGGATTTCTGCTTACACGAAGCCC
CGAAGCTTAAAAAAGGCAGACCTGAAAATATAGAAATGTCTGAAGCGTTC
GAGATGTTTTGTCATCACTTCGAAAACATGATGGATTGTGAAAGCTACAC
AATACAAGAACTTCACGAAAAGCTCCTTGAATTCAACGAGAACGGATACA
CTCTTCGTAGATTTCGTGATAAACTAAGTGCCAAATACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016154XLOC_016154Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028508-proteinTCONS_00028508-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028508-exon-sc0000683-1491911889:70421..71015TCONS_00028508-exon-sc0000683-1491911889:70421..71015Clytia hemisphaericaexon
TCONS_00028508-exon-sc0000683-1510915933:70421..71015TCONS_00028508-exon-sc0000683-1510915933:70421..71015Clytia hemisphaericaexon
TCONS_00028508-exon-sc0000683-1575043694:70421..71015TCONS_00028508-exon-sc0000683-1575043694:70421..71015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:70421..71015 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.179256	0.6244	0.169396	0.936012	0.730314	0.838821	1.10626	0.984228	0.754295	0.651829	0.550911	0.634815	0.773462	0.0521902	0.224033	0.0689974	0.08039	0.195407	0.30672	0.088865	0.260071	0.105384	0	0.888129	1.57711	0.252057	0.403503	0.169731	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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