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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028552 ID=TCONS_00028552|Name=TCONS_00028552|organism=Clytia hemisphaerica|type=transcript|length=2878bpRun BLAST on NCBI protein sequence of TCONS_00028552-protein >TCONS_00028552-protein ID=TCONS_00028552-protein|Name=TCONS_00028552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=618bp MEVLKNDFGGLVSLEFGIPRMLLFSLVIILLSPFTALNTNALSIPTISSFRun BLAST on NCBI transcript from alignment at sc0000691:43227..51450- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028552 ID=TCONS_00028552|Name=TCONS_00028552|organism=Clytia hemisphaerica|type=transcript|length=8224bp|location=Sequence derived from alignment at sc0000691:43227..51450- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000691:43227..51450- >TCONS_00028552 ID=TCONS_00028552|Name=TCONS_00028552|organism=Clytia hemisphaerica|type=CDS|length=20427bp|location=Sequence derived from alignment at sc0000691:43227..51450- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028552 vs. Swiss-Prot (Human)
Match: CNTN2 (Contactin-2 OS=Homo sapiens GN=CNTN2 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.319e-25 Identity = 99/384 (25.78%), Postives = 174/384 (45.31%), Query Frame = 3
Query: 489 NNRKRIHLECITNSNPRPKITFYKDGIELKDDP-RINRAADDQMYIHNVTYLQDDGVYKCSVANHHGESYEEKEIKIYVVGNFVAGSRKDDPADLLDVIVGLGTRIHCPDHSHSYPVRYLWRMKGKFGVDRIIQEDRSFMYLNDGKVLFLSLVTKDI-VDRVNKA--GGVSCL----MSINSNLVESRKIKLKIVDEQTDFDSKPFIHEELPAKQHVLEGKPVTLKCAASGSPLPQVKWYRNGIEININDSSLYRVNARLPEKFTILKMTDKLEGKYKCQFTNRAGMKASTGDVIVARAPK----ISDSSSTTIKRYLKEELKLYCNASGSGNLMFTWVRNGSQLATFQSNERSIEINKGVLTITNVSYDEQGVYQCFVKSQYG 1604
+ +++ L C ++P + +G E+K +P ++ + I N T QD GVY+C +N G + I + F+ K++ D + G G + C +H + Y W ++ E +F+ DG+ F+S T ++ + R N + G SCL M ++ V S+ +L + E T + P I PA+ + L G+ VTL+C A G+P+P++KW + D SL I ++ + EG Y+C+ N G G +IV P+ ISD+ + + L+ C A+G W+RNG LA+ + +E+ G L + +S ++ G+YQC ++++G
Sbjct: 52 STEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRF---GFLQEFSKEE-RDPVKAHEGWGVMLPCNPPAHYPGLSYRW----------LLNEFPNFI-PTDGR-HFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFA-PSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRK-------VDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEAD-----IGSNLRWGCAAAGKPRPTVRWLRNGEPLAS----QNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHG 402 The following BLAST results are available for this feature:
BLAST of TCONS_00028552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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