TCONS_00028553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028553
Unique NameTCONS_00028553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028553 ID=TCONS_00028553|Name=TCONS_00028553|organism=Clytia hemisphaerica|type=transcript|length=2878bp
GTTTAGTCTTTGAATTGTGGTTTTAGCACAAAGTGTGATTAAAAGGGGCT
CATAGACCATTCAACAaattgaaattatcaaaatatttttttctcgttGG
GTGCTTGTTGTATAGTGTGACAgcataaatcaattttttgagaaGGAAAC
AATAAGAAGGACCATACATACATCACAGAATTGAATGTTGAGAATTGATT
TTGAGACATAATTGTCGAAAAAGGAAATTTAACAGAAGATATACTTGATT
TGAGGCAATCTAAAAGCTTTCCGTGTTTGTATATCATTACTTGAAAAAAT
CGTTTGTGTGTAAGATGGAGGTTTTAAAGAATGATTTTGGAGGTCTGGTA
TCCTTAGAATTTGGTATACCAAGaatgttgttattttctttgGTCATCAT
CTTGTTGTCACCTTTCACAGCTCTAAACACAAATGCTCTCAGTATCCCGA
CCATAAGTAGTTTTAACTATTACGTCGACGATCTACCCAACAATCGAAAG
CGAATACACTTAGAATGTATCACTAACAGTAACCCACGACCGAAAATCAC
ATTCTACAAAGATGGTATCGAATTGAAAGATGATCCACGTATCAACCGAG
CAGCCGATGATCAAATGTATATTCATAACGTGACTTATTTACAAGACGAT
GGTGTCTATAAATGCTCTGTTGCCAACCACCATggtgaaagttatgaaga
aaaagaaatcaaaatctatGTTGTCGGAAACTTTGTTGCTGGTTCAAGGA
AAGATGATCCTGCAGATTTGCTTGACGTCATAGTTGGACTAGGAACAAGA
ATCCATTGTCCAGATCATAGTCATTCCTATCCAGTTCGATATTTATGGAG
AATGAAAGGAAAATTTGGTGTGGATCGTATTATACAAGAAGATAGGTCTT
TTATGTATTTGAATGATGGAAAAGTATTGTTTTTATCTTTGGTGACAAAA
GACATTGTGGATAGGGTCAATAAAGCTGGTGGTGTTTCTTGTTTGATGAG
TATCAATTCCAATTTGGTTGAATCCAGgaaaatcaaattgaaaataGTGG
ATGAGCAAACTGATTTTGATAGTAAACCATTCATTCATGAAGAACTTCCG
GCAAAACAACACGTGCTTGAAGGAAAACCAGTTACTTTGAAATGTGCAGC
AAGTGGAAGCCCGCTTCCCCAAGTCAAGTGGTACCGCAATGGTATTGAAA
TCAATATTAACGATTCAAGTTTGTATCGAGTCAACGCGAGGCTTCCAGAG
AAGTTTACCATTTTAAAGATGACCGACAAACTCGAAGGAAAATACAAATG
CCAATTCACAAATAGAGCTGGTATGAAAGCATCTACTGGAGATGTAATTG
TTGCAAGAGCACCAAAGATTAGTGACAGCTCCTCGACCACATTAAAGCGA
TATCTTAAAGAAGAattgaaattatattgtaatgcTTCTGGATCTGGTAA
CCTCATGTTTACATGGGTCCGAAATGGAAGTCAACTTGCAACATTTCAAT
CTAACGAGAGATCAATCGAGATCAATAAAGGAGTTTTGACAATCACCAAT
GTTAGTTATGATGAACAAGGAGTTTACCAATGTTTTGTGAAAAGTCAATA
CGGACGTGATTCCCAAGTATTCAACGTCTTAATCTCGCaAAGAACAGGAA
GTTCAATTGGCGATAAAAACGACTCTAACAtacacaacaacaacagcaac
aacaattCATCTGACTCTTCAACGTCCTCATCAGATTCACCACTTGAACT
CAAATACATCATTCTCATTGGTAGTGGAGGTGGTATTTTAGTCATACTGC
TATGTGGAGGTATCTTCATGTACGTCCGTACCAAAAAAGATAAGGAACAA
GAACAATTTATACCAATTCCAAGCCCTGGATATAGTGATTATACAAACTC
TAACAATTCAACTACTCGAAGTGAGGGTCCTATATATGCAAAACCTAGTG
TCCATGAACCAATGTTAGGACATCCAGCATCATCAGAAATGGGCAGTATG
AACGATAGTATTCGAGGTGCTAAAATGGATGACCCCGAATTTTTAAGACT
GATGAGTACATTACGACGCGACCAACATAATAATGAGAATCCaccttttg
aacatttttatcaAGATATTAATAACTCAAATGACGGTAACCAATCAACA
ACGCCGAGCACTGTATTGTAGGCTCCTTTTAATTGACTTGGAGGGTTTTA
TTATTTGCAGAATTTTACCTTTCACCTAAAGCGATGGTAAAAGAAAAGAT
TACACCTATCAACCTTTACTTTAAAGCTATTGGAGACTGTGTTCGAGTTT
ACCAGGcaggaatgacgtcaaaatgtcgTTGCATTGAAAGACAAAGAATT
TTGACGCCATTTTCTTGTACATTCAATACCAGTCCTTTCAATACCGATTT
CGTTAAGAGGTGAAAGATGTAATTTTGGAATTCTATTTCTTGGGTTGTGG
AACAAGTAACCAAACAATGTCAGCAATGTTTTACCAAGGATGGGAATAGA
GCAGCCATTACTTACAGACATTGTAATGTACTGTGTTGAATGAGGTTTCT
GGTAAGTAGAAAAAACTCGTATCAAAGCAGCAGTAAGATCCGTATTTCCA
GAGAACAATTTTACCAAATACAACTATTACATCAAGTTACTGAATTAACG
ATACTGTAGATATAGATCGACGCATTTATGTGTGTAGAGAAAACAAATAA
CTGTTCATTAAGAAACAAATattgatttatatttcaaaaactgGAAGAGG
AAACAAccttttttattaattattttcaagactcaatttcttaatatatt
ttttgtacatattttttaaagaaaacacaAAACATCAAAGATTAGTGAAT
CTTAAAGAATAATTCCGATAACTTTGAT
Run BLAST on NCBI

transcript from alignment at sc0000691:43227..51450-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028553 ID=TCONS_00028553|Name=TCONS_00028553|organism=Clytia hemisphaerica|type=transcript|length=8224bp|location=Sequence derived from alignment at sc0000691:43227..51450- (Clytia hemisphaerica)
GTTTAGTCTTTGAATTGTGGTTTTAGCACAAAGTGTGATTAAAAGGGGCT
CATAGACCATTCAACAAATTGAAATTATCAAAATATTTTTTTCTCGTTGG
GTGCTTGTTGTATAGTGTGACAGCATAAATCAATTTTTTGAGAAGGAAAC
AATAAGAAGGACCATACATACATCACAGAATTGAATGTTGAGAATTGATT
TTGAGACATAATTGTCGAAAAAGGAAATTTAACAGAAGATATACTTGATT
TGAGGCAATCTAAAAGCTTTCCGTGTTTGTATATCATTACTTGAAAAAAT
CGTTTGTGTGTAAGATGGAGGTTTTAAAGAATGATTTTGGAGGTCTGGTA
TCCTTAGGTAAGTTAATGGTGCATATGTGTCAACATTGTTTCCTCCGAGT
GCTACCTGACATTGTCTCGAGGTTATATGGACGTTTTTTACGTTTTTTGT
GTCGAGGCCACAACCTAAAACCAAAAAGACTTTTGCGAAAGAAAATTCAA
ACAAACATTTTCATGGTTAAATTAACGTTTGAAAATTAACATTAAAATTA
ACGTTATCTTTTTGGTTTTTTGGAGCTTTTAAAAGTGGAGAAGTGATTTT
TTTAGATTTTTTCGCATATTCAAAAAGTCTCTTGTGCATACTTGAGTCCA
AATCTACAGAAATTACCAAAAATTGATACACTATCAAGCTAGACCGGCTA
AAATTTGTATTACCATTTTTGTTGACGTTGCTTGATTAGTGCGTGGTTGC
GTTTTTGAAAATAGAGATTTGATTTTTATACGTTTGATGACAAGTTATGA
GAAATGAGGGCACAATTCAACTCTCCTTCAAACAAGGTGTTAAGCGTTCA
TCTATCCTCGTTTAAGATCATCTTTTGCGGTGTATTTTGAAGTATATTTT
GAGATTCAACGTCAACCTGTGTAGGATTTGTAATATTAGTTTCATGATAC
ACAATTTTGATTATCCGATGAGAATTCGAACACTAAGACGATCTAAATAC
CTGAACAAAATTTGTTAATTTCTTACAACTTACAGCTGATAACTTTATTA
GTGTCAATAAATTCGAACCAATCAGAAATAAATGTCATGTACCAAGCACG
TAAAATTTCGAGTAAAAGCGTTATTTGTCTTCAGACTTTAATTTTGCAAC
CTGTGTATTGTATATATACAATATATTTGGGTATAGTTTTGCTGGTTTGA
AAAGGTTAGCCAGTTAGACCAAAATAAAAACCAGCGAGCCAGCATGATTG
AGAGTCTCAAACTTAGACACCCCCGATTGGGACATTATCAGTTGAATAGA
GAAAAGAAAACATTCAAAGAAACTTGAGAGTTAATAAAGATAACTGTCAT
TTCATGAATGGTCTGTGCTGACTACCAACAGTGCTAGCCTAAGTTAGAGC
TTCACGGAGGAGATCGTTTACCTCCATTTAAGTAATACGAATTATAAAGT
TCACTCTCAACCACAGAGCTTTTAAATCTACTACTACTGATCAATGTATC
AAGCTAAATCAGGTTTCAAAAAAACGTAAAAAAGATTTTTGAAAATATTT
TGAATCAAAACAAAAATTTTGTTGAATGTAGGGTCAATTCTTTTGGGATG
AAATGTACAGACTTCTTTTGTAAGAAATGAAGTCTTAAGATAAATATCAT
CATATCAGTTAAAATTGATTACATTACAAAAAATTGAAATTAACAAATAT
GTAAAAATCCTCGCATACTTTGAATCTCACTTAATTCTTCTGAGAAACCT
GAGCTATCGCGTCTGTTCGATTTAAAGGCAATGTTGAAAATGATATATGA
ATTTCTCTTAATTACAGTCATATTTTCCTATAAAGAATACAGGAGGTATC
TTTCCGACAAGAGTATACTTTGATGTTTACTTTGTAAAGAGCGAATCGCG
TATTATCAAATTTCGTTCAAAAGCCTTAGAGATAGAACAAAGTTTTGACT
TCTCATCATACATAATATATTGATTGTGACATAACACAAAATGCATTTAT
GTGAAGCGTATGGAAAAATAAATAAAATCTACGTCAGTGATTTTTTTTTT
ATTCAAAATATTGCTGAATATGTATGACTCGGCAATAATTTAATGATATT
GCTACCCATTTTGGAGTCAACGTCGTTTCAACCTTCATCTAACGTTATAT
GGACATTGTTTTGACGTTACTTGTAAGCTGGATAAAATTCATAACATGAC
GACTTGTTAACGTTTAAAATTGCTAGGATTTCAACCCTTTAGATTAGTCT
CCCAAATGAAACAAAACGTCAAACACTTTCCATCTAAAGTTCAAAAATTC
ACAAATGTTAAATGAGCGTTGAACAACATAGCGTGTCAACTGGGCACCAG
GGGCACCAACAATCAAATTTACACTCAATATTATCAAATGTCCAAAATTT
TTCTCATAGAATTTGGTATACCAAGAATGTTGTTATTTTCTTTGGTCATC
ATCTTGTTGTCACCTTTCACAGCTCTAAACACAAATGCTCGTAAGTCTAC
TTCATTACTATATACGTTTTTTATCGAAAATTCTGAGCAGAATTTAAGGT
CAGAAAACGATCCGAACATTGACAAATCTTTCCATCAACGTTTGATATTC
CGGTTGCGAATATTTTACTGCTATTTTTGGAAATAGAAACCCCGCAGCTG
CCAAATCATGTTATTTTTACCTGATTGAACATTTATCATAGAGCTGTTGT
TTATTATTTTGGTGTTTTGTGCCAATTGGAATTGAGGGTTTAAAAATTCC
CTAAAACGTAATTTTTTCATCCATTTACAGTCAGTATCCCGACCATAAGT
AGTTTTAACTATTACGTCGACGATCTACCCAACAATCGAAAGCGAATACA
CTTAGAATGTATCACTAACAGTAACCCACGACCGAAAATCACATTCTACA
AAGATGGTATCGAATTGAAAGATGATCCACGTATCAACCGAGCAGCCGAT
GATCAAATGTATATTCATAACGTGACTTATTTACAAGACGATGGTGTCTA
TAAATGCTCTGTTGCCAACCACCATGGTGAAAGTTATGAAGAAAAAGAAA
TCAAAATCTATGGTAAATAATTCTAACAGTTTCGATTTTACTGATGACGC
TCACTTATTCGACGCTCTACTATTCGATACGTTCCATTTTTCGATAATAT
TGAAAGTCACCGTCAAGAAGAATCTCTTATAAACAACACTTTACTTTCCG
ATGAATATCGAATTCCCCTTGAATGTCGAATTAGAGAGCTTCAATTGTAA
TTCTAGATGTATCAAGTTCTCGACATGAAGATGCCTAATATAAACTGGAT
TTAAAGTGGCTAAAGTGGTTTATTTCTTTTGATGATACTTCAATCGAATC
ACAATCGAATCACAATCGAATCTGCCAATTTTGAAAGTCCTGATTTTTCG
ATTTTGCGCGATTGCTTTCGTACGAGTTATGTCATAAGTCCAACCAAAAT
AACTGTGTACTGGTGAAAGAACTGAATTTTGCATTGGAAACTGATTCTAG
AACAGTTTCTAATCTTTGACTCGGAGTTCAGTCATTTCACTTCAGTTCTC
TCACTGAAGTATAGTATATATACGATAGGTTTATTCCTGTAGATTTCAAC
GTTACCTTAAACTCGCCGTCTGTTTTAGTTGTCGGAAACTTTGTTGCTGG
TTCAAGGAAAGATGATCCTGCAGATTTGCTTGACGTCATAGTTGGACTAG
GAACAAGAATCCATTGTCCAGATCATAGTCATTCCTATCCAGTTCGATAT
TTATGGAGAATGAAAGGAAAATTTGGTGTGGATCGTATTATACAAGAAGA
TAGGTCTTTTATGTATTTGAATGATGGAAAAGTATTGTTTTTATCTTTGG
TGACAAAAGACATTGTGGATAGGGTCAATAAAGCTGGTGGTGTNCAAAGT
ATTGTTTCTATCTTTGGTGACAAAAGACATTGTGGATAGGGTCAATAAAG
CTGGTGGTGTTTCTTGTTTGATGAGTATCAATTCCAATTTGGTTGAATCC
AGGAAAATCAAATTGAAAATAGTGGATGAGCGTAAGTAAAATCTCTATAG
GTGTAGGGTATCTTCTCCACTGGGGACGAAACTTTGGGAGAATTTTCCAG
TGGGGTGGGGGTCCAACTGGGTCTTTGTAAAAACCATTCGGAATCGATCG
TCTAAGTAGGCTGATATGATTTTCAACTTGTACCTGATCTTATAGAATAC
CGTTTTTCATCGAAATCTTATTGCTCAATGCCTTCAATTTTTCACATTGA
CATTATAGATCTATTGATTTCTGTCTGATTCAACTCGAATTAACTGTAGA
TTTTCTGTAAGGCCGACTCTTCCTTTAACTAATTTGAACTTTAGACTTCG
ATTCGATGAAGAATTACCTTTATTTTATAGAAACTGATTTTGATAGTAAA
CCATTCATTCATGAAGAACTTCCGGCAAAACAACACGTGCTTGAAGGAAA
ACCAGTTACTTTGAAATGTGCAGCAAGTGGAAGGTATAATCAGATTTATT
ACTTCGGTATTAATTAACAATAGACGATATCTACTTAACATGAAAACTCA
GATTTGACCTCCGAAAATTGCCCACAATGCTTTGCGCGGAAAAAAGTTCA
CGGTGAAATTTTTAACGCGCAAAGCATTGTGGGGGAATTATCGGGGTCAA
ATCTGCAAGTTTTCATGCGAAGCTGATATCGTCTATTCCTAGTTTACAAA
GCCTACACATAAGAGATACGACGTAGCCTAAATTATCAAAGAAACGCTAC
CAATGTTGATTTATGGAGGTTTTATCACCCTTAAAACCAGGGCTTACCTG
ACCCCTTATGCAAAGATGATTCTAAAAGCTGCAGTAAAAAGGATGTAAGC
CCTGGTGCATCTCAAACAATTTCACCAATTTACGAAAACCCTTGAACTGA
CGACCCTTTGCGTTGCAGAATTGTTTATTGGCCGTTGTTGACGAGTGTGT
TTTTTATAAGGCCTAGCTATATTACAATTTTGTCATATCTTATAGCCCGC
TTCCCCAAGTCAAGTGGTACCGCAATGGTATTGAAATCAATATTAACGAT
TCAAGTTTGTATCGAGTCAACGCGAGGCTTCCAGAGAAGTTTACCATTTT
AAAGATGACCGACAAACTCGAAGGAAAATACAAATGCCAATTCACAAATA
GAGCTGGTATGAAAGCATCTACTGGAGATGTAATTGTTGCAAGTAAGATC
CATTTATCTCTCATTCATAACTCAGTTGCCACAGCTACGTTACTTAAATT
AAAATGTTCTTAAACCGTAATAAGGTCTCAAAACGCCAAAAAATACCACC
GTTTCTGAAGCCGCTGGACTTAGATTCCACGTACTTTTCTGGAATCTTTC
CGTTATTTTGTTTTCAGAATAATCGGCTAATAGTTGTAAAGAATTCTTTC
CGAGAGGAAAGAAAACAGGCTAACTTTCAGAAGTCAATTTTCAACTAGCC
GACAGAGTGCTTGTCTTATAATCCATACCTAAAACTAAAGACCACATGCA
ATTTCTCAGATGAAATGGAGTTTTATAAGATGCTTTAATGATTGATTATT
TGAAGTAATAAAAATGACGCGTTCTTTAGAAAAAGTAAGAAAGTTGTTTT
ATTACTGGTTAACAACAACCAAATCAAATAGGAGCTTGTAAAAACTCCAT
CTCGTCCCCAAATCTTTTAGGAGCACCAAAGATTAGTGACAGCTCCTCGA
CCACAATAAAGCGATATCTGAAAGAAGAATTGAAATTATATTGTAATGCT
TCTGGATCTGGTAACCTCATGTTTACATGGGTCCGAAATGGAAGNTTTCT
TTAGGAGCACCAAAGATTAGTGACAGCTCCTCGACCACATTAAAGCGATA
TCTTAAAGAAGAATTGAAATTATATTGTAATGCTTCTGGATCTGGTAACC
TCATGTTTACATGGGTCCGAAATGGAAGTCAACTTGCAACATTTCAATCT
AACGAGTAAGCGTTCATTTATTGACTAAACTTATCAAAATTTAAGATCTC
GTGTAGATTTTTTCAGGATTTTCTATAATATTCTAATATTTCTAATTTTT
GACAGAAATACTTATTTTTAGGCAACAAAAAAATTAGTTACGCAAAATCG
ATTCTCGCTAAAATTAGTTCCATTATAAGGTACACAAAGAGATTGGTGCC
CAACATAAATTCTTTGATGTCTTGATGCAATCAAAGAATAAGTGTCTTGT
TTTTTTCTGTACAGTACTTTACAATATTTATAGGAGATCAATCGAGATCA
ATAAAGGAGTTTTGACAATCACCAATGTTAGTTATGATGAACAAGGAGTT
TACCAATGTTTTGTGAAAAGTCAATACGGACGTGATTCCCAAGTATTCAA
CGTCTTAATCTCGCGTAAGTCGGTATTCCTAACATGATTCTTTTTTGGTT
TTTGATTTAACGTTTTATTTGTTTGGTAGTACTTCTTTTACTCTTCCATG
GGGGGGGGTTTGTAAGGGTTCGAAATACCGTTTTCCCGTCAAAGTTTTTG
CTGAATCCCGGAATCCCGAAAATTGGAAAAATAATAACACCGTCACACCG
GCTTGTACATGGAAAAAATGTACCTAAGTGCCGTCACCGTCTGATTTTAA
AATACCATTTTCCCGTCTCTTTTTTCATCAAATCCCGTAACACCGTACTA
AAAAAAGGCCAATCCCGTCACACCGTAAAAGTACAAACCCCCCTTACATG
TCATCCTCATCTTTTGTGTTTTTTTTCTTGCAGTGGTTTTAATTCAACAA
GCCACCTTCTATTAGTTGTAACTACTGATTCATAGTACTATATATTTTCC
TGAAATTCATGGGGCATCAAAAAATGTTTTTTCTTTGTTTTTCAAAAATT
ATAAAAGCCTTTTTTCTGGCAAACTTAAGCACTCTGAATTATCATTTCAA
TGATGGATAACTCTCTGAGCACTTATTGAAAAAAGGTTAAGAATGGATAG
TAACATCAAAATGTTCATTTTCACCAATTTTCAGAAAGAACAGGAAGTTC
AATTGGCGATAAAAACGACTCTAACATACACAACAACAACAGCAACAACA
ATTCATCTGACTCTTCAACGTCCTCATCAGATTCACCACTTGAACTCAAA
TACATCATTCTCATTGGTAGTGGAGGTGGTATTTTAGTCATACTGCTATG
TGGAGGTATCTTCATGTACGTCCGTACCAAAAAAGATAAGGAACAAGAAC
AATTTATACCAATTCCAAGCCCTGGATATAGTGATTATACAAACTCTAAC
AATTCAACTACTCGAAGTGAGGGTCCTATATATGCAAAACCTAGTGTCCA
TGAACCAATGTTAGGACATCCAGCATCATCAGAAATGGGCAGTATGAACG
ATAGTATTCGAGGTGCTAAAATGGATGACCCCGAATTTTTAAGACTGATG
AGTACATTACGACGCGACCAACATAATAATGAGAATCCACCTTTTGAACA
TTTTTATCAAGATATTAATAACTCAAATGACGGTAACCAATCAACAACGC
CGAGCACTGTATTGTAGGCTCCTTTTAATTGACTTGGAGGGTTTTATTAT
TTGCAGAATTTTACCTTTCACCTAAAGCGATGGTAAAAGAAAAGATTACA
CCTATCAACCTTTACTTTAAAGCTATTGGAGACTGTGTTCGAGTTTACCA
GGCAGGAATGACGTCAAAATGTCGTTGCATTGAAAGACAAAGAATTTTGA
CGCCATTTTCTTGTACATTCAATACCAGTCCTTTCAATACCGATTTCGTT
AAGAGGTGAAAGATGTAATTTTGGAATTCTATTTCTTGGGTTGTGGAACA
AGTAACCAAACAATGTCAGCAATGTTTTACCAAGGATGGGAATAGAGCAG
CCATTACTTACAGACATTGTAATGTACTGTGTTGAATGAGGTTTCTGGTA
AGTAGAAAAAACTCGTATCAAAGCAGCAGTAAGATCCGTATTTCCAGAGA
ACAATTTTACCAAATACAACTATTACATCAAGTTACTGAATTAACGATAC
TGTAGATATAGATCGACGCATTTATGTGTGTAGAGAAAACAAATAACTGT
TCATTAAGAAACAAATATTGATTTATATTTCAAAAACTGGAAGAGGAAAC
AACCTTTTTTATTAATTATTTTCAAGACTCAATTTCTTAATATATTTTTT
GTACATATTTTTTAAAGAAAACACAAAACATCAAAGATTAGTGAATCTTA
AAGAATAATTCCGATAACTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016187XLOC_016187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028553-exon-sc0000691-1575043694:51094..51450TCONS_00028553-exon-sc0000691-1575043694:51094..51450Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:48961..49041TCONS_00028553-exon-sc0000691-1575043694:48961..49041Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:48389..48670TCONS_00028553-exon-sc0000691-1575043694:48389..48670Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:47590..47822TCONS_00028553-exon-sc0000691-1575043694:47590..47822Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:47420..47522TCONS_00028553-exon-sc0000691-1575043694:47420..47522Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:46968..47070TCONS_00028553-exon-sc0000691-1575043694:46968..47070Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:46259..46455TCONS_00028553-exon-sc0000691-1575043694:46259..46455Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:45496..45646TCONS_00028553-exon-sc0000691-1575043694:45496..45646Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:45087..45217TCONS_00028553-exon-sc0000691-1575043694:45087..45217Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1575043694:43227..44466TCONS_00028553-exon-sc0000691-1575043694:43227..44466Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:51094..51450TCONS_00028553-exon-sc0000691-1510915933:51094..51450Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:48961..49041TCONS_00028553-exon-sc0000691-1510915933:48961..49041Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:48389..48670TCONS_00028553-exon-sc0000691-1510915933:48389..48670Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:47590..47822TCONS_00028553-exon-sc0000691-1510915933:47590..47822Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:47420..47522TCONS_00028553-exon-sc0000691-1510915933:47420..47522Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:46968..47070TCONS_00028553-exon-sc0000691-1510915933:46968..47070Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:46259..46455TCONS_00028553-exon-sc0000691-1510915933:46259..46455Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:45496..45646TCONS_00028553-exon-sc0000691-1510915933:45496..45646Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:45087..45217TCONS_00028553-exon-sc0000691-1510915933:45087..45217Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1510915933:43227..44466TCONS_00028553-exon-sc0000691-1510915933:43227..44466Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:51094..51450TCONS_00028553-exon-sc0000691-1491911889:51094..51450Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:48961..49041TCONS_00028553-exon-sc0000691-1491911889:48961..49041Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:48389..48670TCONS_00028553-exon-sc0000691-1491911889:48389..48670Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:47590..47822TCONS_00028553-exon-sc0000691-1491911889:47590..47822Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:47420..47522TCONS_00028553-exon-sc0000691-1491911889:47420..47522Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:46968..47070TCONS_00028553-exon-sc0000691-1491911889:46968..47070Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:46259..46455TCONS_00028553-exon-sc0000691-1491911889:46259..46455Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:45496..45646TCONS_00028553-exon-sc0000691-1491911889:45496..45646Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:45087..45217TCONS_00028553-exon-sc0000691-1491911889:45087..45217Clytia hemisphaericaexon
TCONS_00028553-exon-sc0000691-1491911889:43227..44466TCONS_00028553-exon-sc0000691-1491911889:43227..44466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:43227..51450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0132925	0	0.0903029	0.0368113	4.41202e-09	0	1.23247e-06	8.63539e-08	0.61278	0	0	0.257836	0	0	1.2751e-08	0	0.000550192	0	0	0	1.01827e-09	2.12996e-07	0.0339428	5.87933e-09	0	0	0.00425396	0.602647	1.98831e-06	7.88107e-06
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BLAST of TCONS_00028553 vs. Swiss-Prot (Human)
Match: CNTN2 (Contactin-2 OS=Homo sapiens GN=CNTN2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.199e-23
Identity = 99/384 (25.78%), Postives = 174/384 (45.31%), Query Frame = 3 
Query:  489 NNRKRIHLECITNSNPRPKITFYKDGIELKDDP-RINRAADDQMYIHNVTYLQDDGVYKCSVANHHGESYEEKEIKIYVVGNFVAGSRKDDPADLLDVIVGLGTRIHCPDHSHSYPVRYLWRMKGKFGVDRIIQEDRSFMYLNDGKVLFLSLVTKDI-VDRVNKA--GGVSCL----MSINSNLVESRKIKLKIVDEQTDFDSKPFIHEELPAKQHVLEGKPVTLKCAASGSPLPQVKWYRNGIEININDSSLYRVNARLPEKFTILKMTDKLEGKYKCQFTNRAGMKASTGDVIVARAPK----ISDSSSTTXXXXXXXXXXXXCNASGSGNLMFTWVRNGSQLATFQSNERSIEINKGVLTITNVSYDEQGVYQCFVKSQYG 1604
            +  +++ L C   ++P     +  +G E+K +P   ++     + I N T  QD GVY+C  +N  G     + I  +    F+    K++  D +    G G  + C   +H   + Y W          ++ E  +F+   DG+  F+S  T ++ + R N +  G  SCL    M  ++  V S+  +L +  E T   + P I    PA+ + L G+ VTL+C A G+P+P++KW +        D SL            I  ++ + EG Y+C+  N  G     G +IV   P+    ISD+ +      +   L+  C A+G       W+RNG  LA+    +  +E+  G L  + +S ++ G+YQC  ++++G
Sbjct:   52 STEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRF---GFLQEFSKEE-RDPVKAHEGWGVMLPCNPPAHYPGLSYRW----------LLNEFPNFI-PTDGR-HFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFA-PSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRK-------VDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEA-----DIGSNLRWGCAAAGKPRPTVRWLRNGEPLAS----QNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHG 402
The following BLAST results are available for this feature:
BLAST of TCONS_00028553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNTN21.199e-2325.78Contactin-2 OS=Homo sapiens GN=CNTN2 PE=1 SV=1[more]
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