TCONS_00028564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028564
Unique NameTCONS_00028564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028564 ID=TCONS_00028564|Name=TCONS_00028564|organism=Clytia hemisphaerica|type=transcript|length=607bp
CATCCTAGTATATTTCCTCACTGATTCTGCCAGTTATAGGTTAATCTAAA
GTTGATCTGTTGTGATACAAGAATCCACTTGGACATCTAGTATGCACGAT
TTCTTCATGAATGTAAATAATCCAGCAAGAGAGGGCGGAGCCGGAGGGAG
CGCCCCAGACCTTCAATAATTCATCACAACCAATTGTTAAACCAGCCTCC
AGGCTTTCAATTCCTTTAACACTTGGATctttaaatagatacatcattga
atatgCCTTTGGTCTTTGTCCTTCAATAAGTTTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGATctttaaatagatacatcattgaatatgCCTTTGGTC
TTTGTCCTTCAATAAGTTTTCCGGTGTCGTCAAACTAAGTTCATATATCA
AAAACGTTGAGTTTGTCTTTGGTTTCACCTAGCTCAAGCTTTCTTAGTTG
AGAAGAATGACATTAAAGAGCTAAAAATGTCATCAGtcaatccaacattt
ccaaaTTAAAGCAGTTTTTCATAGTCAAAAACACTGCTGACAGCCTCCAA
ACAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000691:91997..92603

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028564 ID=TCONS_00028564|Name=TCONS_00028564|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at sc0000691:91997..92603 (Clytia hemisphaerica)
ATTTTGTTTGGAGGCTGTCAGCAGTGTTTTTGACTATGAAAAACTGCTTT
AAtttggaaatgttggattgaCTGATGACATTTTTAGCTCTTTAATGTCA
TTCTTCTCAACTAAGAAAGCTTGAGCTAGGTGAAACCAAAGACAAACTCA
ACGTTTTTGATATATGAACTTAGTTTGACGACACCGGAAAACTTATTGAA
GGACAAAGACCAAAGGcatattcaatgatgtatctatttaaagATCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAAACTTATTGAAGGACAAAGACCAAA
GGcatattcaatgatgtatctatttaaagATCCAAGTGTTAAAGGAATTG
AAAGCCTGGAGGCTGGTTTAACAATTGGTTGTGATGAATTATTGAAGGTC
TGGGGCGCTCCCTCCGGCTCCGCCCTCTCTTGCTGGATTATTTACATTCA
TGAAGAAATCGTGCATACTAGATGTCCAAGTGGATTCTTGTATCACAACA
GATCAACTTTAGATTAACCTATAACTGGCAGAATCAGTGAGGAAATATAC
TAGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016196XLOC_016196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028564-exon-sc0000691-1491911889:91997..92603TCONS_00028564-exon-sc0000691-1491911889:91997..92603Clytia hemisphaericaexon
TCONS_00028564-exon-sc0000691-1510915933:91997..92603TCONS_00028564-exon-sc0000691-1510915933:91997..92603Clytia hemisphaericaexon
TCONS_00028564-exon-sc0000691-1575043694:91997..92603TCONS_00028564-exon-sc0000691-1575043694:91997..92603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:91997..92603 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.61386	3.55584	2.6385	1.47603	11.2188	7.0567	9.01997	13.1497	13.0847	17.8618	19.4273	9.21946	9.63067	7.8648	4.49193	6.89609	5.09425	6.91777	10.5063	17.8058	8.9543	9.44886	4.65982	5.68642	6.49066	7.69774	35.4975	23.4519	27.0489	19.5099
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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