|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028569 ID=TCONS_00028569|Name=TCONS_00028569|organism=Clytia hemisphaerica|type=transcript|length=2416bp
attcggaaAATATGACGGCAACAAAATAGAAAGagagaaaatgttcaaaa
agcATCAGCATTAAGAAAATCAGCTAGGAAACTAAATACAATCATGTGGA
AAATTGAAGAActaaatttgagttttaagagAGCTTTAAAATATCTGAAT
TTTAAGCTGTTGATTCGAGATCTGTACAATATGATTCAAGTCTCTTGCAG
AGATGTGACATGAAACAGAAATAAGACATCCTAATTAAGATTGGTTTGTA
GTGAATGTACTGCAAACTAAACTTGGAGATTACGAACGGTTCAAAACATA
TCATCTGTTAGCCATTAACTTATAATATTTCCATAAATGACTTGAACTTG
GTCCTTTGATTATTCAAAAGTATCCATGCTCGAGAAATCTATTGAAATTC
ATTACTGTCCTTGTCTAGCCACTGACTCTATCAAGTTGAAACAACAATCA
TTGTTGAGTTACTCAGGAGCCACAAGCATTTAATACAAATTCTGCAAGTA
TTTGTCTCGAAAGGACAGtactaaaatttcaaagtacTCCATACCATTAC
AGTTAGGTTGTGATTCCATTTAAGATACTGGATGACTAAGTCATTTTGTA
ACGCCCTTTTCTCCGTCAACTCCTATAGCGAAAATAATTTGACTTATCAA
GtatttccaaaaaacctgtttagcATTTAGTCATAAAACATTTGGCTGCA
AATTGGAGCAGTGAACCTGCCAGTCAAACTTGTCTACTTATCCCTTATTA
TAAAGTTTCAACCCATTGTCACAAAAGGATAGACACTTCCGATAGTAGTC
AACGAATATCGATCAAACAAATTTGACACAACACTATAAAATgattaatt
tcaaaagattagcaaagaattgataaatttatcctGAATGTCTGGCATTG
CTGGTACTACCCTTGCTTAAAAAGGTCAAATGTTGTTACCTCAAATGTAG
GATATTAGTTAAACGTTAAGAATAATAGATTCAGgccattgaaaattttt
taaataaaccaACCAGTCCCCAGAACAATGGAAGAAATGATAGTTAGAGA
ACAGCCTCCTTTTTGACTTGCTGTCGTTTAAATCAATAATAAAACAAGGA
GAGTTGCAGAAAATGTTTGGGTGATTTGGGAACTGCAAAAAGTTTATGAC
AacatctcaaaaatcaaaacacatgCAAAATGACTCATCAATCCAGTCAA
AAATCCACTATAACAAGCATTTAATTTGATCTTATTAAAGCAAAAGACGA
AAAGGCTATAAAAACGAAAAGCAAAAACTGGATCACTACCCTTATTCTTC
AAGTCACAAGTAACAACACCAATTTGTcatttcaactttgagaaaGCAGA
TACAATTATTCAATCGTACCAGGCTTGTATACCACGTacgtgtcaaaatc
aaaacaatcattaaATCTGACATCTTTCTCAAAGAACTTGTCCCATCATA
TCAAATCTCAAAACAACTTGACAACCGTTTCATAGCTCATTGACCGGTTA
ATTTATAACAACTATGaataaaaatacaaaaccaTAACACTGGATAACAG
GCCCCTATCCCCAACTCTCAAAAGGCTAAATGAAGCAGCACAACGACCGA
CAATCACAACTCCCGAAACGATGACAAGTGTCACTCCAGCCAAAAATCAC
TCAGAATGCAGGAAAATCTTTTAAGCCCTGAACAAAATTCTAGTATCAAG
ACAGACACGACTCCTCAAAACAAAGCCAAAGGAACAACAAAAGCCAGAAG
AAGCAAACAATGATATGAAGTCaaagattgaatttaaaatgcCACATATT
CAGGTGAATACTGATAAACTTGCCTCAATAACTTTACCAGCCTTTAAGAC
TATCTAAATCCAGACGAAATAGAAAACAATACAAAGATTCATACCGAAAA
TTAAAGGAGGGGTGGCAGTGAGAGTTGATGAACGTTTTTACTCGTAGCGA
GGCTACCATTATTGTTGTTGATCGCTCCTGTGTGGGCGTTTGAGGCGGTA
GCGGGTGAAGAGGTTGTAGTTCGTTCGTTATTTGGATGGACGAAGCCAGC
TCGCTGGATGCTTTCGAATACTGTTACCAGGATATTGGTTTCATCGCCTA
CTGAAGAAACTGGCACTGTGAAGTTTGGGCGAGCCGTTGGATTCAACGCT
GGTTGTTGACACGTGTAGCAGATATAGTGGCAAAGTGGCTGAAATGGTGG
TCGTTGTTCGTCGTGTTGTTCTTTATTCAGATGATGAAAGATTGAAGTTG
TGATCAATTGAGACTGAGCTGAACTGCGCTGAAAGGGGCTTGACGGTAGG
ATATATATAGGCGAAGGAAAGAATAACCGGCAGCCGAAATATACTATTTC
ATAGCCGCCTCGGTGCAGTGGCGGGATGTACTTCATTCGACTTGGAATTA
ACCTGAGCTAAGGTTT Run BLAST on NCBI protein sequence of TCONS_00028569-protein >TCONS_00028569-protein ID=TCONS_00028569-protein|Name=TCONS_00028569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MKYIPPLHRGGYEIVYFGCRLFFPSPIYILPSSPFQRSSAQSQLITTSIF
HHLNKEQHDEQRPPFQPLCHYICYTCQQPALNPTARPNFTVPVSSVGDET
NILVTVFESIQRAGFVHPNNERTTTSSPATASNAHTGAINNNNGSLATSK
NVHQLSLPPLL Run BLAST on NCBI transcript from alignment at sc0000691:221547..223962 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028569 ID=TCONS_00028569|Name=TCONS_00028569|organism=Clytia hemisphaerica|type=transcript|length=2416bp|location=Sequence derived from alignment at sc0000691:221547..223962 (Clytia hemisphaerica)
AAACCTTAGCTCAGGTTAATTCCAAGTCGAATGAAGTACATCCCGCCACT
GCACCGAGGCGGCTATGAAATAGTATATTTCGGCTGCCGGTTATTCTTTC
CTTCGCCTATATATATCCTACCGTCAAGCCCCTTTCAGCGCAGTTCAGCT
CAGTCTCAATTGATCACAACTTCAATCTTTCATCATCTGAATAAAGAACA
ACACGACGAACAACGACCACCATTTCAGCCACTTTGCCACTATATCTGCT
ACACGTGTCAACAACCAGCGTTGAATCCAACGGCTCGCCCAAACTTCACA
GTGCCAGTTTCTTCAGTAGGCGATGAAACCAATATCCTGGTAACAGTATT
CGAAAGCATCCAGCGAGCTGGCTTCGTCCATCCAAATAACGAACGAACTA
CAACCTCTTCACCCGCTACCGCCTCAAACGCCCACACAGGAGCGATCAAC
AACAATAATGGTAGCCTCGCTACGAGTAAAAACGTTCATCAACTCTCACT
GCCACCCCTCCTTTAATTTTCGGTATGAATCTTTGTATTGTTTTCTATTT
CGTCTGGATTTAGATAGTCTTAAAGGCTGGTAAAGTTATTGAGGCAAGTT
TATCAGTATTCACCTGAATATGTGgcattttaaattcaatctttGACTTC
ATATCATTGTTTGCTTCTTCTGGCTTTTGTTGTTCCTTTGGCTTTGTTTT
GAGGAGTCGTGTCTGTCTTGATACTAGAATTTTGTTCAGGGCTTAAAAGA
TTTTCCTGCATTCTGAGTGATTTTTGGCTGGAGTGACACTTGTCATCGTT
TCGGGAGTTGTGATTGTCGGTCGTTGTGCTGCTTCATTTAGCCTTTTGAG
AGTTGGGGATAGGGGCCTGTTATCCAGTGTTAtggttttgtatttttatt
CATAGTTGTTATAAATTAACCGGTCAATGAGCTATGAAACGGTTGTCAAG
TTGTTTTGAGATTTGATATGATGGGACAAGTTCTTTGAGAAAGATGTCAG
ATttaatgattgttttgattttgacacgtACGTGGTATACAAGCCTGGTA
CGATTGAATAATTGTATCTGCtttctcaaagttgaaatgACAAATTGGTG
TTGTTACTTGTGACTTGAAGAATAAGGGTAGTGATCCAGTTTTTGCTTTT
CGTTTTTATAGCCTTTTCGTCTTTTGCTTTAATAAGATCAAATTAAATGC
TTGTTATAGTGGATTTTTGACTGGATTGATGAGTCATTTTGcatgtgttt
tgatttttgagatgtTGTCATAAACTTTTTGCAGTTCCCAAATCACCCAA
ACATTTTCTGCAACTCTCCTTGTTTTATTATTGATTTAAACGACAGCAAG
TCAAAAAGGAGGCTGTTCTCTAACTATCATTTCTTCCATTGTTCTGGGGA
CTGGTtggtttatttaaaaaattttcaatggcCTGAATCTATTATTCTTA
ACGTTTAACTAATATCCTACATTTGAGGTAACAACATTTGACCTTTTTAA
GCAAGGGTAGTACCAGCAATGCCAGACATTCaggataaatttatcaattc
tttgctaatcttttgaaattaatcATTTTATAGTGTTGTGTCAAATTTGT
TTGATCGATATTCGTTGACTACTATCGGAAGTGTCTATCCTTTTGTGACA
ATGGGTTGAAACTTTATAATAAGGGATAAGTAGACAAGTTTGACTGGCAG
GTTCACTGCTCCAATTTGCAGCCAAATGTTTTATGACTAAATgctaaaca
ggttttttggaaataCTTGATAAGTCAAATTATTTTCGCTATAGGAGTTG
ACGGAGAAAAGGGCGTTACAAAATGACTTAGTCATCCAGTATCTTAAATG
GAATCACAACCTAACTGTAATGGTATGGAgtactttgaaattttagtaCT
GTCCTTTCGAGACAAATACTTGCAGAATTTGTATTAAATGCTTGTGGCTC
CTGAGTAACTCAACAATGATTGTTGTTTCAACTTGATAGAGTCAGTGGCT
AGACAAGGACAGTAATGAATTTCAATAGATTTCTCGAGCATGGATACTTT
TGAATAATCAAAGGACCAAGTTCAAGTCATTTATGGAAATATTATAAGTT
AATGGCTAACAGATGATATGTTTTGAACCGTTCGTAATCTCCAAGTTTAG
TTTGCAGTACATTCACTACAAACCAATCTTAATTAGGATGTCTTATTTCT
GTTTCATGTCACATCTCTGCAAGAGACTTGAATCATATTGTACAGATCTC
GAATCAACAGCTTAAAATTCAGATATTTTAAAGCTctcttaaaactcaaa
tttagTTCTTCAATTTTCCACATGATTGTATTTAGTTTCCTAGCTGATTT
TCTTAATGCTGATgctttttgaacattttctctCTTTCTATTTTGTTGCC
GTCATATTttccgaat Coding sequence (CDS) from alignment at sc0000691:221547..223962 >TCONS_00028569 ID=TCONS_00028569|Name=TCONS_00028569|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000691:221547..223962 (Clytia hemisphaerica)
ATGAAGTACATCCCGCCACTGCACCGAGGCGGCTATGAAATAGTATATTT
CGGCTGCCGGTTATTCTTTCCTTCGCCTATATATATCCTACCGTCAAGCC
CCTTTCAGCGCAGTTCAGCTCAGTCTCAATTGATCACAACTTCAATCTTT
CATCATCTGAATAAAGAACAACACGACGAACAACGACCACCATTTCAGCC
ACTTTGCCACTATATCTGCTACACGTGTCAACAACCAGCGTTGAATCCAA
CGGCTCGCCCAAACTTCACAGTGCCAGTTTCTTCAGTAGGCGATGAAACC
AATATCCTGGTAACAGTATTCGAAAGCATCCAGCGAGCTGGCTTCGTCCA
TCCAAATAACGAACGAACTACAACCTCTTCACCCGCTACCGCCTCAAACG
CCCACACAGGAGCGATCAACAACAATAATGGTAGCCTCGCTACGAGTAAA
AACGTTCATCAACTCTCACTGCCACCCCTCCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028569-exon-sc0000691-1491911889:221547..223962 | TCONS_00028569-exon-sc0000691-1491911889:221547..223962 | Clytia hemisphaerica | exon |
| TCONS_00028569-exon-sc0000691-1510915933:221547..223962 | TCONS_00028569-exon-sc0000691-1510915933:221547..223962 | Clytia hemisphaerica | exon |
| TCONS_00028569-exon-sc0000691-1575043694:221547..223962 | TCONS_00028569-exon-sc0000691-1575043694:221547..223962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:221547..223962 . |
Blast
The following BLAST results are available for this feature:
|
