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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028573 ID=TCONS_00028573|Name=TCONS_00028573|organism=Clytia hemisphaerica|type=transcript|length=1464bp
TTTATTTCTTCAGTCAGTCTGAACTGGCACTCGGGTTTTATGAACTAACA
GACGAGTTGAAAGCTAAGCTCCTTGCTCGATTATTGAGGGATAGGGCGCT
CACCTTTTATCGTACCCTTGACCCAGCTGTCCGTGATGATTACGATAACT
TAAAACAGGCACTCACTAACGAGTTTGACGTACCACAAATTAAGTACAGG
AAACGTCAACTTTTACCTCAGATCTCACAACAAGGAGACCCCGTCAGCAC
ATATTTGAGCAGACTGGAGAAACTGTCCCAGAATTTGGAAGTCCCTGAGC
AAACTAAGATGGACATCATGATTGCAGGCTTGGATACTGGTTACCGTAAC
TACATCCAAATGAAACAGCCGAATACATACAGCGAGGCTACTCATGCCCT
ACTGCTTAAAGAAGCCGTCAACCCGCCTAACGACGTCATGAAGGATGTGC
TGAAGACGGTACAAGCGATCCATCAAAACCAGAACACCAAAGGAAAGCAT
AATGCTGACACCAGAAGAGTAATCGACAATCGAAGGAGCCACCAACAGGA
AACTCAAAGAAGAATTGCGTGTTACTACTGCCAAAAACCCGGTCACGCTA
TGGCGGACTGCAGGAAACGTATCCGAGACGACTCCCGTCCTAGATTCATT
CCATCTCAAGTAAACCGATACAACACACCAAACCGATACAACACACCAGA
TCCATATCAGGCTCCAAACCAATACCGAAATGCTGCTCCACCCGCATACA
GCTCAAAGACAAGGCAGCCGAAACCTGAAGTGACGTGCTTCAAATGCAAG
AAAACCGGACATTATGCGATAGAATGTCCCGTTAACGTCAAGTCAGAATG
ACTAGGTAACCGAAAAGACAATGAAACTTTATTATTAGACATTAAAAGTA
GTGATAATGTACATAAATTGAGAAGTATCTTCTGGACCTCCGTAAATAAG
CTCCCAATcccaggctcggatacagagggaggctataaccaatggaggag
agtgcactttattatcgtattaccttatatggaaactaattactctccat
gaataagatagcctacctcctgtatccgaccctgaaTCCAGACTTTAATT
GATACAGGTTCAACCGTTACCGCCGTATCCTTATCGACGATAAAAAGCTT
GACGGAAGAAACACTACTTCAAGAAGCTGACATAGCCCCAGCAGAAGTTG
AAGTAGCAAATGGGAATATCGACCGAGCAATTAAAGTAGTGACTTTGCCA
ATTAGTATTGGTTCTAACACGTATTTTCACAACACCCATGTATCCAAGAC
ATTACCAGTACCGTTACTTATTGGAGACGACTTTTTACACGCTCACCAAG
ACACACTATCGTTCAATGGCTCAACCGCTAAATTGACTTTATTGAATGCT
GTTGAAAATAATATCAAGTATATAAACAACAACCAAGTCTCCAAATCAAC
CAAACATATACAAG Run BLAST on NCBI protein sequence of TCONS_00028573-protein >TCONS_00028573-protein ID=TCONS_00028573-protein|Name=TCONS_00028573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
YFFSQSELALGFYELTDELKAKLLARLLRDRALTFYRTLDPAVRDDYDNL
KQALTNEFDVPQIKYRKRQLLPQISQQGDPVSTYLSRLEKLSQNLEVPEQ
TKMDIMIAGLDTGYRNYIQMKQPNTYSEATHALLLKEAVNPPNDVMKDVL
KTVQAIHQNQNTKGKHNADTRRVIDNRRSHQQETQRRIACYYCQKPGHAM
ADCRKRIRDDSRPRFIPSQVNRYNTPNRYNTPDPYQAPNQYRNAAPPAYS
SKTRQPKPEVTCFKCKKTGHYAIECPVNVKSE Run BLAST on NCBI transcript from alignment at sc0000691:246751..248214 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028573 ID=TCONS_00028573|Name=TCONS_00028573|organism=Clytia hemisphaerica|type=transcript|length=1464bp|location=Sequence derived from alignment at sc0000691:246751..248214 (Clytia hemisphaerica)
CTTGTATATGTTTGGTTGATTTGGAGACTTGGTTGTTGTTTATATACTTG
ATATTATTTTCAACAGCATTCAATAAAGTCAATTTAGCGGTTGAGCCATT
GAACGATAGTGTGTCTTGGTGAGCGTGTAAAAAGTCGTCTCCAATAAGTA
ACGGTACTGGTAATGTCTTGGATACATGGGTGTTGTGAAAATACGTGTTA
GAACCAATACTAATTGGCAAAGTCACTACTTTAATTGCTCGGTCGATATT
CCCATTTGCTACTTCAACTTCTGCTGGGGCTATGTCAGCTTCTTGAAGTA
GTGTTTCTTCCGTCAAGCTTTTTATCGTCGATAAGGATACGGCGGTAACG
GTTGAACCTGTATCAATTAAAGTCTGGAttcagggtcggatacaggaggt
aggctatcttattcatggagagtaattagtttccatataaggtaatacga
taataaagtgcactctcctccattggttatagcctccctctgtatccgag
cctgggATTGGGAGCTTATTTACGGAGGTCCAGAAGATACTTCTCAATTT
ATGTACATTATCACTACTTTTAATGTCTAATAATAAAGTTTCATTGTCTT
TTCGGTTACCTAGTCATTCTGACTTGACGTTAACGGGACATTCTATCGCA
TAATGTCCGGTTTTCTTGCATTTGAAGCACGTCACTTCAGGTTTCGGCTG
CCTTGTCTTTGAGCTGTATGCGGGTGGAGCAGCATTTCGGTATTGGTTTG
GAGCCTGATATGGATCTGGTGTGTTGTATCGGTTTGGTGTGTTGTATCGG
TTTACTTGAGATGGAATGAATCTAGGACGGGAGTCGTCTCGGATACGTTT
CCTGCAGTCCGCCATAGCGTGACCGGGTTTTTGGCAGTAGTAACACGCAA
TTCTTCTTTGAGTTTCCTGTTGGTGGCTCCTTCGATTGTCGATTACTCTT
CTGGTGTCAGCATTATGCTTTCCTTTGGTGTTCTGGTTTTGATGGATCGC
TTGTACCGTCTTCAGCACATCCTTCATGACGTCGTTAGGCGGGTTGACGG
CTTCTTTAAGCAGTAGGGCATGAGTAGCCTCGCTGTATGTATTCGGCTGT
TTCATTTGGATGTAGTTACGGTAACCAGTATCCAAGCCTGCAATCATGAT
GTCCATCTTAGTTTGCTCAGGGACTTCCAAATTCTGGGACAGTTTCTCCA
GTCTGCTCAAATATGTGCTGACGGGGTCTCCTTGTTGTGAGATCTGAGGT
AAAAGTTGACGTTTCCTGTACTTAATTTGTGGTACGTCAAACTCGTTAGT
GAGTGCCTGTTTTAAGTTATCGTAATCATCACGGACAGCTGGGTCAAGGG
TACGATAAAAGGTGAGCGCCCTATCCCTCAATAATCGAGCAAGGAGCTTA
GCTTTCAACTCGTCTGTTAGTTCATAAAACCCGAGTGCCAGTTCAGACTG
ACTGAAGAAATAAA Coding sequence (CDS) from alignment at sc0000691:246751..248214 >TCONS_00028573 ID=TCONS_00028573|Name=TCONS_00028573|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0000691:246751..248214 (Clytia hemisphaerica)
TCATTCTGACTTGACGTTAACGGGACATTCTATCGCATAATGTCCGGTTT
TCTTGCATTTGAAGCACGTCACTTCAGGTTTCGGCTGCCTTGTCTTTGAG
CTGTATGCGGGTGGAGCAGCATTTCGGTATTGGTTTGGAGCCTGATATGG
ATCTGGTGTGTTGTATCGGTTTGGTGTGTTGTATCGGTTTACTTGAGATG
GAATGAATCTAGGACGGGAGTCGTCTCGGATACGTTTCCTGCAGTCCGCC
ATAGCGTGACCGGGTTTTTGGCAGTAGTAACACGCAATTCTTCTTTGAGT
TTCCTGTTGGTGGCTCCTTCGATTGTCGATTACTCTTCTGGTGTCAGCAT
TATGCTTTCCTTTGGTGTTCTGGTTTTGATGGATCGCTTGTACCGTCTTC
AGCACATCCTTCATGACGTCGTTAGGCGGGTTGACGGCTTCTTTAAGCAG
TAGGGCATGAGTAGCCTCGCTGTATGTATTCGGCTGTTTCATTTGGATGT
AGTTACGGTAACCAGTATCCAAGCCTGCAATCATGATGTCCATCTTAGTT
TGCTCAGGGACTTCCAAATTCTGGGACAGTTTCTCCAGTCTGCTCAAATA
TGTGCTGACGGGGTCTCCTTGTTGTGAGATCTGAGGTAAAAGTTGACGTT
TCCTGTACTTAATTTGTGGTACGTCAAACTCGTTAGTGAGTGCCTGTTTT
AAGTTATCGTAATCATCACGGACAGCTGGGTCAAGGGTACGATAAAAGGT
GAGCGCCCTATCCCTCAATAATCGAGCAAGGAGCTTAGCTTTCAACTCGT
CTGTTAGTTCATAAAACCCGAGTGCCAGTTCAGACTGACTGAAGAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028573-exon-sc0000691-1491911889:246751..248214 | TCONS_00028573-exon-sc0000691-1491911889:246751..248214 | Clytia hemisphaerica | exon |
| TCONS_00028573-exon-sc0000691-1510915933:246751..248214 | TCONS_00028573-exon-sc0000691-1510915933:246751..248214 | Clytia hemisphaerica | exon |
| TCONS_00028573-exon-sc0000691-1575043694:246751..248214 | TCONS_00028573-exon-sc0000691-1575043694:246751..248214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:246751..248214 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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