TCONS_00028575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028575
Unique NameTCONS_00028575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028575 ID=TCONS_00028575|Name=TCONS_00028575|organism=Clytia hemisphaerica|type=transcript|length=527bp
CCAGTGCCATATCATACCAATCAACAATATCAACATTAACTTTTCTTGGA
GCTTTATAAATGCCTCGGCCATATGTAAATTTAACATGTAAAATAACGAG
CAATGATGTTCATTTATATATGGATAAATCGCACGTTCAGGAGTGAAACA
TTGTCAAAACAACTCaatcaagaaaacaaactgATCGCATTTCGAATTGA
GGCGTTCCTCAACACCCAACAGCTAATCATCATCGATCAAGAAAGCAAAC
AAATCACGCATTTCTATTGCAAAGTATCTCAAAGGTAGGAGGGACAGTAA
CAGATTGCCTTAATTCTAAAACAAACTCATCATCACTATAATTAAACTCA
AAATCATCTGCGAACCCCTGAGAACCAAAATTCTATCACAACCGCACCCT
ATTTTGAGAATATCAACCAATAAGATTCAAGCAGTGAAATCCCATTGTTG
TTATAAACCAATCCGATCCAAACACACACCTAGCACGAACAATAACTATT
ATCTGCACTTATTGTAATATTAATTNN
Run BLAST on NCBI

transcript from alignment at sc0000691:257591..258117

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028575 ID=TCONS_00028575|Name=TCONS_00028575|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0000691:257591..258117 (Clytia hemisphaerica)
NNAATTAATATTACAATAAGTGCAGATAATAGTTATTGTTCGTGCTAGGT
GTGTGTTTGGATCGGATTGGTTTATAACAACAATGGGATTTCACTGCTTG
AATCTTATTGGTTGATATTCTCAAAATAGGGTGCGGTTGTGATAGAATTT
TGGTTCTCAGGGGTTCGCAGATGATTTTGAGTTTAATTATAGTGATGATG
AGTTTGTTTTAGAATTAAGGCAATCTGTTACTGTCCCTCCTACCTTTGAG
ATACTTTGCAATAGAAATGCGTGATTTGTTTGCTTTCTTGATCGATGATG
ATTAGCTGTTGGGTGTTGAGGAACGCCTCAATTCGAAATGCGATcagttt
gttttcttgattGAGTTGTTTTGACAATGTTTCACTCCTGAACGTGCGAT
TTATCCATATATAAATGAACATCATTGCTCGTTATTTTACATGTTAAATT
TACATATGGCCGAGGCATTTATAAAGCTCCAAGAAAAGTTAATGTTGATA
TTGTTGATTGGTATGATATGGCACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016207XLOC_016207Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028575-exon-sc0000691-1491911889:257591..258117TCONS_00028575-exon-sc0000691-1491911889:257591..258117Clytia hemisphaericaexon
TCONS_00028575-exon-sc0000691-1510915933:257591..258117TCONS_00028575-exon-sc0000691-1510915933:257591..258117Clytia hemisphaericaexon
TCONS_00028575-exon-sc0000691-1575043694:257591..258117TCONS_00028575-exon-sc0000691-1575043694:257591..258117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:257591..258117 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.237778	0.430304	0.134282	0.310494	0.148438	0	0.148604	2.31454	1.80888	0.570154	0.407908	4.285	2.58747	6.90032	6.32638	9.01173	7.26413	1.30633	3.37702	9.13656	14.3833	0.30878	0.49628	0	0.128825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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