TCONS_00028588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028588
Unique NameTCONS_00028588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028588 ID=TCONS_00028588|Name=TCONS_00028588|organism=Clytia hemisphaerica|type=transcript|length=3939bp
GTTAGCAGCCACCAACCAAATAATCATTCCCTATCTGTCAAAAATGCTAA
ACTCTTCAAACATGGCTGGATTTTTCACGAAGAGCATTTCTCAAATCATT
GGAAGTAGCTATTATAACAAAACACCTGAAGCCGGCTCTCAATACATTTT
GGGAACGTCTCCTCCAGATGGTTCAATGGAGTTGTACATTTTGGACAACA
AGCTACAAGTTTGTTCATGTCCTAGGGAAAAGATACCACTGCTCTGTCAC
TCAATCATTCAGATGGCCTTATTGCCAGACTCAAGtCCAAGCTTTTTCAG
TCTCACTGAAGCAGAGAATATGACTCTGATTTTGACTGAAGAGGATTTCA
AACAATTACCGGAAAATGTTGAGCTGGAGACTTCTGGTCAGGTGTGGAGA
GTTCTCACTGTTTCTGTTGGTGCTCTTGGCTCCTTCAATGAAATCATGGG
TGTCAGTAAGATTGCAAAATCCGCCATCGGACCATTAGCTGACCATAATG
TTTCTGTACTANCTCTTGGCTCCTTCAATGAGATCATGGGTGTCAGTAAG
ATTGCAAAATCCGCCATCGGACCATTAGCTGACCATAATGTTTCTGTACT
ATGTCTGTCAACCTATCAATCCGACTATATCTTGGTGCAAGAATCACAAC
TCAACGAAGCCATTCAATGTTTGAGCTCATActtcaaaatattcaatgaa
gATCATCAACGTGTCAGCGAATCAAAAGCGACCACACCCCTCTCCCCAAC
ACCCAgaaaatcaCGCCCGATTGTTCATCCATACCAAAGCCCTGATAAAA
TCTTCCACATCGCTGGTCTTGATGCTTCCAAATTATCTGGTGTGGTACAA
GTTTTATTGGAACTGATGTTCTTTCCAAAGACATCAGGAGAGGAGTTTTC
ATTCTTCCACTTTACAATCGTGCACGGTGATATTTCGCTCGTCCTCGACG
ATGATTCATTCAACAAATTTCCAAAGAACACGCTCTATTCATCACAATCT
TCGAAAGATGGAAATTGGAAGATCATCTCTATTGGAGAACAACCTCTTGG
ATTCGTGGAGTGCGGCATTGTGGCGCAGGTGGTGGAGCCATTGGCGTCTT
CACAAGTTTCATCATATTATTTGAGTACTTATGATATCGAATATTGTATG
GTCCACGAAACAGATTACGAGAAAGCTAAAGAAACTTTCGAGAAACTCAA
ACTCGAGAATTTCAGCGATCAGGAAGACACACCGGAAGCAAGCCCAACTG
ATTCACCGGACGAAAATGAGAATACGGAAACAGCCGAAAGTTCTACGGAC
AATAACGCGGACATAAGGCCGGGAGAGAATATGTCACTCTCAGAATCCTT
GGACAATATACATCACGCTTATCCTTCAGCGTTACACGAAGCGAACTACT
CGCGATCTCCTTTGACGCCGACCAGTGAATGTTCTTCGTACGGCACCAGC
CCACTTTCCGACGTTGACATAGCAACGGCGACGTCATCTACATCAAACAC
GTCCACCAGTGTACCGACGGACCCGATCCCTATTCCGTCATCGACGTGTT
TACGTGACTCCATCACGAGGCTGAAATGTTGAGAGGGCGGAGATGTTGAG
AGGGCGGAGGATTCTTGTTTTGGTAGAAAATGCTTTGCTGTGGCGTAATG
GTACGCATTCTTCATCAGATGTATGCAATGGTCAGTTAGAAGACTTATGT
TTTGTCAATCCCTCATTCCATCTTGTTTTGTGAGACTTTATCTGTCTGTC
TTTCCAATCTTTTCACTTTTATCTTTTATATAATGATCCCTTTAATTTCA
TGCTCTTCTCCAGTAAACCTTTCGGAACTATTCTTCAACTGTTCCGAGGT
AGCTTTGAACTACAGATCACTCTCTCTATTCGAGCTCCACAAAAGATTTT
CCCGATCAAAGGGAAGGTCCAAAGTATGTCTTATAAGACTTACTGAGAGG
AGCAACTATTTAGTTCAAACTACGGAAAAaggttcgaataatagaggttg
cCTGTATAAGtaagagaaatattttttgttttcgttACCTTTTATTTGGT
CAGCTCACATCTTTCTTGATTTGGGATAAAACTCTCGTTGTCTTTATTGT
TGCATGTGAAGaggtgttttgtttttttaatttattttaatatttaacAA
GAAAACGGGTGGAATTACCTTGGAGATCATTCATTTCgttttgtctttat
ttttatatacattaagaaaaatctttaagtctatttatttattaaaaact
AGATTCCAGGCTCTTCTTGTGAAAGTAGGTTTGTCATTTGTATTCCCCAT
GAAAGGTTTAAAGGTTTTGCTttcaaataagagtgatattgtttgcttac
tcatcagctttaatttacaagctttttgatattgaattgacatggatgtg
gagcaagattggccagatagataaaaagaaaaacattttttgcttatatc
agcacaatacaacaataggtagacactgtcctgatatgaattatgtgtct
gatatgaaacgggaacacttatgcaaaaataagtaaaacctttaattttt
caaaatttatttcgaaaatcGATATAAAAGTTTCTTCTGAGTTTAAATCA
GGGCCGCTTTCTGTTAGATAGAGCTGGatgatttttcatttcgatttttt
gttttgtatcctttttttttttattttcacatttATGTTTAAACATAACG
TTACGGAAGCAAATTATTTCTGTAGCTGACTGATGTCTGACTTTTGCACA
ACTTGTACTCGATTCGACATTGACcttaattttcgaaattttgaacttcG
GAAATTCTCCAAAAACCATTAGTATCCTAATCTATAACTTCCTTGCTCAT
TCTATGTCAGCGACCTTCCAAGCTTTTTTGTTGACCCGACTTACATACGA
GTCTTATTAGCTTAGAGTGACATATTGACAAATTTCGTTTAAAGTGGTCT
AGGTCGATGGAGAAACACATGTCGAATCGGAACATATACAATATTCCTGA
CATTGAAAGTCTCCTTTCTTTTGGAACCAGGAGCGTCAGAGATAAATTTT
TGTGTAtacttataaaagaaaaaagtaatttaGAGTAATTAAATAGTTTT
TATACCAAAacccattttattttaacaaaattagtgtttacaattttcaa
tttcatgtttttatggATCTCCTCTTGACTCTTGATGTGTTgtgttttaa
tgaaaaaaaacacacaatGACTGTTTGTGAATGTATGTAAAGCTTATGTT
TTTAACCCTTGATGCCTTTTCAgacaatttttagaaagttctttCTATAA
GTGTCCAAATAGCTGCATCCTACTTTCTGAATTTCGGACATCTTTTACAG
TCTTGATAATTAAGACgaatatcattttatttttgacattaaacTTTATG
ATGGTTTAATTATTTTTGGACGTTGAGTGAATTTGACGTCATAGTTTATA
AAAGggtgtttttttagttttaggcTTTAAAAGTGACCTCATTTCATCCA
ACCTTCAGTTTCATAAATTATGATGTTTTTCTGCCAAACGAAGATTTCGG
GTGTCGAGTTTTCCATTCTATTATCGTCGTCAAATTTTGTAAGTGAATAA
ATGTAAGTGATCAGATTTTCAGACaagaggaatttcaaaaatccatTTTC
ACAGTTCACGGCTTTGGAATGGAATAATTCGGGCATGTGCGGACTCGACC
TGCGAAAATTGAACCCTTAGAGCcccccttagagagacttaagAGGAGTA
TTAAATGTGGCGGGTTTATTTATCCTGTGCTTTTGAGGGttgaaacattt
tctttgatattgtttagatagtttttttttgtttataaagtaATTATACT
TCAAAAATTGTACCTATTATTTTGGTAATGCTGTTTCTtcgagaaaaata
tcaaaaaagtgaaagagaaaatgaacgaaataaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000692:149298..158949+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028588 ID=TCONS_00028588|Name=TCONS_00028588|organism=Clytia hemisphaerica|type=transcript|length=9652bp|location=Sequence derived from alignment at sc0000692:149298..158949+ (Clytia hemisphaerica)
GTTAGCAGCCACCAACCAAATAATCATTCCCTATCTGTCAAAAATGCTAA
ACTCTTCAAACATGGCTGGATTTTTCACGAAGAGCATTTCTCAAATCATT
GGAAGTAGCTATTATAACAAAACACCTGAAGCCGGCTCTCAATACATTTT
GGGAACGTCTCCTCCAGATGGTTCAATGGAGTTGTACATTTTGGACAACA
AGCTACAAGTTTGTTCATGTCCTAGGGAAAAGATACCACTGCTCTGTCAC
TCAATCATTCAGATGGCCTTATTGCCAGACTCAAGGTGAGTAGGTGTTCT
TTACatttgaatttagaaaataatttcctttttttattattttttaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGa
gactttgtgaaaaaactGGTATCTTGTAATCTGATATTATTgtatcaaat
gaaaaaaaaatcaaaatatgagaCAAGATCATATAAAAACACTTCCAAGA
CACTTGAGCCCAATCTTGAAAATAAACACTTCTTCAAGTAGAGGTTTGCA
TTTGCAAAGTGTTTGTGTGCGATATTGCTTATTCAATTTCATGGGATACT
TGTCATCATCACAAGtaaaaatttatgtgtttaagaatattgactttaat
ttcataTTTCGTTAGCAGCCACCGACCAAATAATCATTCCCTATCTGTCA
AAAATGCTAAACTCTTCAAACATGGCTGGATTTTTCACGAAGAGCATTTC
TCAAATCATTGGAAGTAGCTATTATAACAAAACACCTGAAGCCGGCTCTC
AATACATTTTGGGAACGTCTCCTCCAGATGGTTCAATGGAGTTGTACATT
TTGGACAACAAGCTACAAGTTTGTTCATGTCCTAGGGAAAAGATTCCACT
ACTCTGTCACTCAATCATTCGGATGGCCTTATTACCAGACTCAAGGTGAG
TAGGTGTTCTTTACAtttgaatttagaaaatgatttcctcttttgtttga
tttttaatcttttaaatACTGAATGTCAAAGTCTTAGTATTGGGATATTC
CAGatatagtctgtaccccctatgttgagagGGTGTGAAGTCCAGgatgg
tctggaaaataaaaaatccaggtcCGGTTTTTTGAGTGTACAACTCCAGA
GtagtcagtaaaatgaggtggaAAGTCCAGGGTGGTCACCTTTCCCAAGA
AAGACCTCAACATAGGGGTTACAACTTTTTTCTAGGGTAGCCCATTTTAT
GAATATTGTACCTGAATAATTGTTTAACATTCCTTGTGATAATAATGTAA
ACATtacttattttttgttttctttcagtCCAAGCTTTTTCAGTCTCACT
GAAGCAGAGAATATGACTCTGATTTTGACTGAAGAGGATTTCAAACGTAA
GAAAATGTCTTTTTAATCGAATTCTAAATTGTAGTAGACAAAAATTGGTA
CTCTTTAACGTTATTTAGAGAAATCTGTTTTTATGGTTAGGTCATTTAAA
AATGTAAAGTTTCACTTTGGTTTTGATAATCTTTTTTGTCTAGACTTTGT
TCATTCTGATTACATTAAAACTGTTGtttggaaaaacttttaaatttgat
taaCGGTAGACTTTTATGAGGCAACAATGATAATGTGATTAAGTAACAGG
TTGTCACATTTGACAACATCTGATAACactttcatttgttttgattcaaa
GAAACAGcttttttttaagttatttCATAAAGAAAGCTTTCCTGCCCTAT
CAGGtcatatttttaaatatatgaaattttatatacatcatcaaaaaaat
gatttttttaaggaAGTGTTCCTTTCATGTATGTataaatatagcctaga
agttAGTACTAAAATTATATCCCAACAAAATTATCAactaactaaaatag
ctttcatATTTACGACTGTTATGATAAAATAAAGGTGTGTTATTTCAGCT
CTTTCAGTTCTTACTTTACCTAACCTAGTTCATATCATTCATCACCattt
aaaaagaacaaaatgaaaCCCAATAAaacttagctctagtttagacagcc
gactttctgccctgcctaatctcattgttagagtaggcaaaaaATGGACA
GAAAGTTGGTagtttaaaatctttgctttaaaaaggttgaaagaagacat
tgcattgacgtcaaaagagggcaatgcattgactttagatagCCAACTTT
CTGtcaactttaattcacaattagaatagtcAGGGCAAagagtgggccgt
ctaaactaaatcttttttatttaatctTTTCCCTCTGTAGAATTACCGGA
AAATGTTGAGCTGGAGACTTCTGGTCAGGTGTGGAGAGTTCTCACTGTTT
CTGTTGGTGCTCTTGGCTCCTTCAATGAAATCATGGGTGTCAGTAAGATT
GCAAAATCCGCCATCGGACCATTAGCTGACCATAATGTTTCTGTACTANC
TCTTGGCTCCTTCAATGAGATCATGGGTGTCAGTAAGATTGCAAAATCCG
CCATCGGACCATTAGCTGACCATAATGTTTCTGTACTATGTCTGTCAACC
TATCAATCCGACTATATCTTGgtaataatccaatttttcatactgtTAGT
TTTCGGTAGCTAAAATCTCTTTTTTGTTATTAGGGTTGACAATTTTTTGC
TACTCAAATTGTATAACCTTAAATATCAGGGCTTTCATAGAGTTAATTTC
CAACTGCATTGTTTTTACGTTCCATGACaagaacctctataactcgaatg
aaCTGAAATCTGATATCCCCCCAGTTATACTGACCCCACTGGATCTTAAT
TTAAAGCTGTCATTCATTATTTTAATCCTTTATAATTACTTAGGTGCAAG
AATCACAACTCAACGAAGCCATTCAATGTTTGAGCTCATActtcaaaata
ttcaatgaagATCATCAACGTGTCAGCGAATCAAAAGCGACCACACCCCT
CTCCCCAACACCCAGTAAGGTTTTAGTAGagtttatgaaatctggtgctT
GATGTTGTAATAATACTAAATAAAACTAAAGTTGTATTTAATTGGGTCAT
TCCATTTCTTATCCATatagggggtggacgaacatttccagggggtctaa
aggagcgtttttttatttttctagggggtaaaaagttattcgaaaatttc
caggggtaaaagactgatctTCGTTCGTCCATCATCACTTTGAGgtacaa
aaataacttttgcaatttttgccattttccaggggtatctaaacattttc
aagaaattcttttcgacttgaaaaggttcgtccaccccctgtatggattt
ttaatggaacagcccattgtGTTCTCTTTGAGATCTTGATCATGGGCTTG
GTGAATATTTACAAGGAAGTTTCCTTTAAGGGACATCATTCAAAGTGCCA
CTgattgcttacacagcattgtTACAAAGGAAAGAACAGCCCCCCACCCC
ACGCTGCTGCATGTGCACAAATTTTGTGAATTGAGAAATTCATCTTGTGA
TTAGGAAAAATACTGAATAATAGTCTAATAGTCTATTGACCATGGTCTTG
GTGCATAGTTACGGAAGTTGTGTACTTTTAAAAAGGCATCATTTTACCGT
TTGAACAACTTCCCCCATATACAGAAGTTGTGTACTTTCAACCGTTTTGT
GTACATTTAAAACCGTTTGCTTACACGACATTGTTAAATAAAGGAAAGAA
TAACTCCCCCACGCATATacataaattttgagaatttcttttgtttattc
tgctttgtcagtaTATAAGGCGCGCCTCCTACATCATGAAAATAGATCTT
TAATATTTTGCTTGGataattttccaggaaaatcaCGCCCGATTGTTCAT
CCATACCAAAGCCCTGATAAAATCTTCCACATCGCTGGTCTTGATGCTTC
CAAATTATCTGGTGTGGTACAAGTTTTATTGGAACTGATGTTCTTTCCAA
AGTATGTTCccttttgttactttttctgaTTTCCTTACTAATCAACTAAC
TCTTCTATCAGGTTCGTTGTGATGCTCAAAACTCTTTTACCTCAGATAGG
TTTACATTTATATCAAAATTCAGCACGTCGAAGAATCTGCGCACAAAATG
AGTTGTCTTTGAAATGATATAATTTTCGGTGTTAAAAGAATCATTATAAA
CgtttaaaggaaaatttttgtcgCATTTAGAATTGTCTTTGTCTCTTCAA
TATATTTCGTTCAATTTATGATTATTTTCTTCCAATGTAATGTCATCAGG
TCATTCTGATAGATTCTACCTAAAAATTCAGCACGTCGAAGAATCTGGTG
CGCACAAAATGAGTTGTCTTTGAAATGATATAATTTTCGATGTTAAAAGA
ATCATTATAAAcattcaaaggaaaatttttgtcgCATTTAGAATTGTCTT
TGTCTCTTCAATATATTTCAGTTGGTAACAATTTTCTTCCAATGTAATGT
CATCAGATCATTCTGATAGATTCTACTTAAAAATTCAGCACGTCGAAGAA
TCTGGTGCGCACAAAATGAGTTGTCTTTGAAATGATATAATTTTCGTTGT
TAAGAGTCAAGGAAAATGCACATCGCGTTTGGAATTGTCTTCGGATATAC
ATTACGTTCAATATAAGATCATTTTCTGCTAATGTTATGTCATTCTGCGC
ATACCACGCATACCATTCCTACTCTAAAAGGGATATGGAAAATGTGATGA
CCGGAAGAGTGAATATGCGTGTTATGCGCGGAATATCAGAATCTGCTTGG
AAATTACTTCTAATGATATTCTTTTTGTTCTGTAGGACATCAGGAGAGGA
GTTTTCATTCTTCCACTTTACAATCGTGCACGGTGATATTTCGCTCGTCC
TCGACGATGATTCATTCAACAAGTAACACTCTTTCCACTTTTCACATCTC
ACCATGTTTTCGTAGAAAACTTATCCAAAAAATCTGGCACTGACTCTTTT
CTGATGTACTGTTGGCGAGAGGGCCACATTAGATCTACACCCTTTTTCAT
AACGTCATAAAGTGTCACGATTAcaaactttttattgaaaaaacatTGAT
CTTTTCATCCGAAACATCCTTTGTCTTTTGACTTAACATAGAGAATTCCC
AAAATTCATTacacttaaaataatttttcaagatttctaaGTCAATCAAA
ATACGGGCACGTAAAACTGTGCTAGGTCTCTACTAGCGACCTAAACCGTT
ACTGAAATAATCGCCATCACAAAATTCAGAAAGATTGGATTTATCAAATA
GGCTTTCGTAAACACTACTTTCCGGGCTATAGAAAACTTAGATATCTTAT
TCTTCCTCGCTACCTTTCCCTGTGACTGTAATCAAAAAGTTGAAGCCTTT
AGAGAAGTCTATTACAGTAGAGTTCTTTTAAACCGAGTTTCTACAACTTg
aatatctccttaactcgaacaagttttctcgtcccttaagtcaacaatgc
cttataaactttactccataactcgaaatttcctaaactcgaacaaattt
gtgttccctgtgcgtgttcgagttatgaaaacTCAACTGTATCTGCATtt
tgaaatgagaatttttttccaatgCAATGCATTTGTCTCGATTACCAGAT
TTCCAAAGAACACGCTCTATTCATCACAATCTTCGAAAGATGGAAATTGG
AAGATCATCTCTATTGGAGAACAACCTCTTGGATTCGGTGAGATATATCA
TCTTCAACTACTTTCctacaacacccctgtctcacagccccggtggaact
tttttctcagTGCAGGATAAACACTCcaattgaaattccaatggagataa
aaattctattgttccaaggttaataaatccaatggGTACTCCTGGTATTT
ACGAAATTGTTGCCAAACTTTCCAGTGGGACTTAAATTTCAGGGTATTCT
CCCAccggtgacgaaatttttgccaaattttccagtgggactagggtccc
agcgggtctgacAGAGGGGTGTCCTACACATAATTGTCCTGGCAGCTTTG
GCTGtttattgtttcagaaaatgACCAGCCAGCAGACAGAGACCTGGCCT
GTCCGCTAGATGATCATTCAAAACAAGATTTCCTTGGTTTAACCCCCTtc
cctaaaattcaaaatttcctgtcttgaagtttttcaagttgtcaatttac
gtaatttccgctaTTATGGACGCAAACGTTCGAACATGTAGAACCTTTAC
GTAAATCGAATGTCCGCTTCCTGGAAGTTACgaaacttgaaaaatatgaa
aactcTCTATTGTATTAGGCCTACACAGGAATAAAACTAATAAGTACGAA
GGCACTTAATTTTGGTTGGTTCTTGTTTAAAAATTATTATCTAGTCAGAT
AAGTATCCTATAATGTCTATGATTTGGACATCCCAAATAAACAACTCATT
CGAATGTTCTTCTTTTTCCAGTGGAGTGCGGCATTGTGGCGCAGGTGGTG
GAGCCATTGGCGTCTTCACAAGTTTCATCATATTATTTGAGTACTTATGA
TATCGAATATTGTATGGTAAGATTGAATGTGTTTTTAGAGAACAGTCATC
CTGTAGATGGGAATTCTTTAGATGTTGAGAGCGAGGCTGAGTTATTAATA
TGGAATAATAATAACTatgagattcttctcccatcgtCGAGCTAAATTAC
CTTCACCTTTAGTAAAATTATTTATCTCTTTTTCCTAGTCAAATTTTAGA
CTCATTTTTATGCTTCagctttgtacatttttttcaaatatcccAATGTT
TTACGGTAATTATCTGGAACTTTAAAGTAATATTTATAGCAATTCATTTT
CTTCATCCGTCAGGTCCACGAAACAGATTACGAGAAAGCTAAAGAAACTT
TCGAGAAACTCAAACTCGAGAATTTCAGCGATCAGGAAGACACACCGGAA
GCAAGCCCAACTGATTCACCGGACGAAAATGAGAATACGGAAACAGCCGA
AAGTTCTACGGACAATAACGCGGACATAAGGCCGGGAGAGAATATGTCAC
TCTCAGAATCCTTGGACAATATACATCACGCTTATCCTTCAGCGTTACAC
GAAGCGAACTACTCGCGATCTCCTTTGACGCCGACCAGTGAATGTTCTTC
GTACGGCACCAGCCCACTTTCCGACGTTGACATAGCAACGGCGACGTCAT
CTACATCAAACACGTCCACCAGTGTACCGACGGACCCGATCCCTATTCCG
TCATCGACGTGTTTACGTGACTCCATCACGAGGCTGAAATGTTGAGAGGG
CGGAGATGTTGAGAGGGCGGAGGATTCTTGTTTTGGTAGAAAATGCTTTG
CTGTGGCGTAATGGTACGCATTCTTCATCAGATGTATGCAATGGTCAGTT
AGAAGACTTATGTTTTGTCAATCCCTCATTCCATCTTGTTTTGTGAGACT
TTATCTGTCTGTCTTTCCAATCTTTTCACTTTTATCTTTTATATAATGAT
CCCTTTAATTTCATGCTCTTCTCCAGTAAACCTTTCGGAACTATTCTTCA
ACTGTTCCGAGGTAGCTTTGAACTACAGATCACTCTCTCTATTCGAGCTC
CACAAAAGATTTTCCCGATCAAAGGGAAGGTCCAAAGTATGTCTTATAAG
ACTTACTGAGAGGAGCAACTATTTAGTTCAAACTACGGAAAAaggttcga
ataatagaggttgcCTGTATAAGtaagagaaatattttttgttttcgttA
CCTTTTATTTGGTCAGCTCACATCTTTCTTGATTTGGGATAAAACTCTCG
TTGTCTTTATTGTTGCATGTGAAGaggtgttttgtttttttaatttattt
taatatttaacAAGAAAACGGGTGGAATTACCTTGGAGATCATTCATTTC
gttttgtctttatttttatatacattaagaaaaatctttaagtctattta
tttattaaaaactAGATTCCAGGCTCTTCTTGTGAAAGTAGGTTTGTCAT
TTGTATTCCCCATGAAAGGTTTAAAGGTTTTGCTttcaaataagagtgat
attgtttgcttactcatcagctttaatttacaagctttttgatattgaat
tgacatggatgtggagcaagattggccagatagataaaaagaaaaacatt
ttttgcttatatcagcacaatacaacaataggtagacactgtcctgatat
gaattatgtgtctgatatgaaacgggaacacttatgcaaaaataagtaaa
acctttaatttttcaaaatttatttcgaaaatcGATATAAAAGTTTCTTC
TGAGTTTAAATCAGGGCCGCTTTCTGTTAGATAGAGCTGGatgatttttc
atttcgattttttgttttgtatcctttttttttttattttcacatttATG
TTTAAACATAACGTTACGGAAGCAAATTATTTCTGTAGCTGACTGATGTC
TGACTTTTGCACAACTTGTACTCGATTCGACATTGACcttaattttcgaa
attttgaacttcGGAAATTCTCCAAAAACCATTAGTATCCTAATCTATAA
CTTCCTTGCTCATTCTATGTCAGCGACCTTCCAAGCTTTTTTGTTGACCC
GACTTACATACGAGTCTTATTAGCTTAGAGTGACATATTGACAAATTTCG
TTTAAAGTGGTCTAGGTCGATGGAGAAACACATGTCGAATCGGAACATAT
ACAATATTCCTGACATTGAAAGTCTCCTTTCTTTTGGAACCAGGAGCGTC
AGAGATAAATTTTTGTGTAtacttataaaagaaaaaagtaatttaGAGTA
ATTAAATAGTTTTTATACCAAAacccattttattttaacaaaattagtgt
ttacaattttcaatttcatgtttttatggATCTCCTCTTGACTCTTGATG
TGTTgtgttttaatgaaaaaaaacacacaatGACTGTTTGTGAATGTATG
TAAAGCTTATGTTTTTAACCCTTGATGCCTTTTCAgacaatttttagaaa
gttctttCTATAAGTGTCCAAATAGCTGCATCCTACTTTCTGAATTTCGG
ACATCTTTTACAGTCTTGATAATTAAGACgaatatcattttatttttgac
attaaacTTTATGATGGTTTAATTATTTTTGGACGTTGAGTGAATTTGAC
GTCATAGTTTATAAAAGggtgtttttttagttttaggcTTTAAAAGTGAC
CTCATTTCATCCAACCTTCAGTTTCATAAATTATGATGTTTTTCTGCCAA
ACGAAGATTTCGGGTGTCGAGTTTTCCATTCTATTATCGTCGTCAAATTT
TGTAAGTGAATAAATGTAAGTGATCAGATTTTCAGACaagaggaatttca
aaaatccatTTTCACAGTTCACGGCTTTGGAATGGAATAATTCGGGCATG
TGCGGACTCGACCTGCGAAAATTGAACCCTTAGAGCcccccttagagaga
cttaagAGGAGTATTAAATGTGGCGGGTTTATTTATCCTGTGCTTTTGAG
GGttgaaacattttctttgatattgtttagatagtttttttttgtttata
aagtaATTATACTTCAAAAATTGTACCTATTATTTTGGTAATGCTGTTTC
Ttcgagaaaaatatcaaaaaagtgaaagagaaaatgaacgaaataaaaaa
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016212XLOC_016212Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028588-exon-sc0000692-1491911889:149298..149582TCONS_00028588-exon-sc0000692-1491911889:149298..149582Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:149298..149582TCONS_00028588-exon-sc0000692-1510915933:149298..149582Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:149298..149582TCONS_00028588-exon-sc0000692-1575043694:149298..149582Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1491911889:150676..150743TCONS_00028588-exon-sc0000692-1491911889:150676..150743Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:150676..150743TCONS_00028588-exon-sc0000692-1510915933:150676..150743Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:150676..150743TCONS_00028588-exon-sc0000692-1575043694:150676..150743Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1491911889:151638..151918TCONS_00028588-exon-sc0000692-1491911889:151638..151918Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:151638..151918TCONS_00028588-exon-sc0000692-1510915933:151638..151918Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:151638..151918TCONS_00028588-exon-sc0000692-1575043694:151638..151918Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1491911889:152191..152311TCONS_00028588-exon-sc0000692-1491911889:152191..152311Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:152191..152311TCONS_00028588-exon-sc0000692-1510915933:152191..152311Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:152191..152311TCONS_00028588-exon-sc0000692-1575043694:152191..152311Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1491911889:153175..153298TCONS_00028588-exon-sc0000692-1491911889:153175..153298Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:153175..153298TCONS_00028588-exon-sc0000692-1510915933:153175..153298Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:153175..153298TCONS_00028588-exon-sc0000692-1575043694:153175..153298Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1491911889:154133..154219TCONS_00028588-exon-sc0000692-1491911889:154133..154219Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:154133..154219TCONS_00028588-exon-sc0000692-1510915933:154133..154219Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:154133..154219TCONS_00028588-exon-sc0000692-1575043694:154133..154219Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1491911889:154946..155034TCONS_00028588-exon-sc0000692-1491911889:154946..155034Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:154946..155034TCONS_00028588-exon-sc0000692-1510915933:154946..155034Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:154946..155034TCONS_00028588-exon-sc0000692-1575043694:154946..155034Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1491911889:155769..155863TCONS_00028588-exon-sc0000692-1491911889:155769..155863Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:155769..155863TCONS_00028588-exon-sc0000692-1510915933:155769..155863Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:155769..155863TCONS_00028588-exon-sc0000692-1575043694:155769..155863Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1491911889:156161..158949TCONS_00028588-exon-sc0000692-1491911889:156161..158949Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1510915933:156161..158949TCONS_00028588-exon-sc0000692-1510915933:156161..158949Clytia hemisphaericaexon
TCONS_00028588-exon-sc0000692-1575043694:156161..158949TCONS_00028588-exon-sc0000692-1575043694:156161..158949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000692supercontigsc0000692:149298..158949 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.668856	0.446992	0.305741	0.00177571	0	0	4.02693e-09	0	0.000383083	7.67675e-08	0.000587273	2.22069e-08	0.000139984	0	0.53959	8.53323e-11	3.4558e-10	0	1.50912e-05	1.72301e-07	1.32022	1.81921	0.950049	0.701516	0	0	4.0302	1.86908	2.28905	2.59689
Blast
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BLAST of TCONS_00028588 vs. Swiss-Prot (Human)
Match: CAST2 (Cytosolic arginine sensor for mTORC1 subunit 2 OS=Homo sapiens GN=CASTOR2 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 6.209e-54
Identity = 128/342 (37.43%), Postives = 187/342 (54.68%), Query Frame = 2 
Query:  176 MELYILDNKLQVCSCPREKIPLLCHSIIQMAXXXXXXX-XXXXXTEA-ENMTLILTEEDFKQLPENVELETSGQVWRVLTVSVGALGSFNEIMGVSKIAKSAIGPLADHNVSVLXLGSFNEIMGVSKIAKSAIGPLADHNVSVLCLSTYQSDYILVQESQLNEAIQCLSSYFKIFN--EDHQRVSESKATTPLSPTPR-KSRPIVHPYQSPDKIFHIAGLDASKLSGVVQVLLELMFF------PKTSGEE---FSFFHFTIVHGDISLVLDDDSFNKFPKNTLYSSQSSKDGNWKIISIGEQPLGFVECGIVAQVVEPLASSQVSSYYLSTYDIEYCMVHE 1159
            MEL+IL+++LQV S  +E IPL  + +I++A L   +   FFSLTE  E+ T+I+ EE F +LP +  L  +   W  L V                             VS     S ++ +GV+KIAKS I PLAD N+SV  LSTYQ+D+ILV+E  L      LSS F I          +E+   T     P+   RP++HP  SP   F +  LD   L  V  +L+++MF+      P  +G++     FF F+++ G ISLV+D  +  +FP N L++S S +   WK++ IG QPLGF ECGIVAQ+ EPLA++ + +YY+ST+  ++ +V E
Sbjct:    1 MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGFLELPSSEHLSVADATWLALNV-----------------------------VSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDLPFVTHTLSSEFTILRVVNGETVAAENLGITNGFVKPKLVQRPVIHPLSSPSNRFCVTSLDPDTLPAVATLLMDVMFYSNGVKDPMATGDDCGHIRFFSFSLIEGYISLVMDVQTQQRFPSNLLFTSASGE--LWKMVRIGGQPLGFDECGIVAQISEPLAAADIPAYYISTFKFDHALVPE 311
The following BLAST results are available for this feature:
BLAST of TCONS_00028588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAST26.209e-5437.43Cytosolic arginine sensor for mTORC1 subunit 2 OS=... [more]
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