TCONS_00028600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028600
Unique NameTCONS_00028600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028600 ID=TCONS_00028600|Name=TCONS_00028600|organism=Clytia hemisphaerica|type=transcript|length=974bp
tactAGAGTAAAGTGTAAGAAAGGTATATCAAGAGTCATGAGCTCAGAAA
CTGTGAAACAAGACGAAACATCAAGGAAGGAGAGCAATGTGCGAGTAGTT
GTACGTGTTCGGCCTCCGAACGAAAGAGAACTATCACAAGGAAAATGCAA
TGTTGTTAAAGTTGTTGATAACTTTATGTTGACCTTTGACCCTAAGGAAA
ATGACCAGTTTGGTGGTACTCAGAAAAGATGTTCTATACTTGATAAGAAA
ATGAGAGACTTAAATTTCATGTTTGATCGAGTTTTTGATGACCAAGCAAC
AAATGAGGATGTTTTTCAACATACAACAAAACCAGTTATCGAATCAGTTC
TTCAAGGTTTTAATTGTTCTGTTTTCGCCTATGGTGCAACATCTGCTGGT
AAAACACATACTATGCTGGGATCACCAAATCAACCTGGTGTTATTTTTCT
CACCATGATGGAATTGTACAAAAGTTTGATGGCAATTGATGAGCAGTTTG
AGACGGATATTTCTGTGTCTTATTTAGAGATATACAATGAAACATGTAAA
GATTTACTTTTACCAACTGGACCTCTGGCAGTTCGTGAAGACCCAGAAAA
AGGCGTCTGTGTTGCTGGCTTATCTTTACATAAGCCAAGAAGTGCAGAAG
AATTGTTGGAGATGCTTCATTTCGGTAACCAGAATCGAACGCAACATCCC
ACTGACGCCAATAAACAATCATCCAGATCACATGCCGTTTTCCAAGTATT
CGTCAAGCAACTTCCAAAAGCTTCTGGTATCACGGCCAGTNtattttttt
tccatttaagaCGTTTTATTATTCTCAAAGCGCTTAAATGTCAAAATTAG
TCAATTAGCATAAATACGAATGAGATGATTTTTCATGATACCCAAAACAT
GGTTTTACTTACTTACCATGCTGTCAACGCTGGTaaattgttgatatttt
tgctgGACTAATTTCAATCATCAG
Run BLAST on NCBI

transcript from alignment at sc0000693:35140..37376+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028600 ID=TCONS_00028600|Name=TCONS_00028600|organism=Clytia hemisphaerica|type=transcript|length=2237bp|location=Sequence derived from alignment at sc0000693:35140..37376+ (Clytia hemisphaerica)
tactAGAGTAAAGTGTAAGAAAGGTATATCAAGAGTCATGAGCTCAGAAA
CTGTGAAACAAGACGAAACATCAAGGAAGGAGAGCAATGTGCGAGTAGTT
GTACGTGTTCGGCCTCCGAACGAAAGAGAACTATCACAAGGAAAATGCAA
TGTTGTTAAAGTTGTTGATAACTTTATGTTGACCTTTGACCCTAAGGAAA
ATGACCAGTTTGGTGGTACTCAGAAAAGATGTTCTATACTTGATAAGAAA
ATGAGAGACTTAAATTTCATGTTTGATCGAGTTTTTGATGACCAAGCAAC
AAATGAGGATGTTTTTCAACATACAACAAAACCAGTTATCGAATCAGTTC
TTCAAGGTTTTAATTGTTCTGTTTTCGCCTATGGTGCAACATCTGCTGGT
AAAACACATACTATGCTGGGATCACCAAATCAACCTGGTGTTATTTTTCT
CACCATGATGGAATTGTACAAAAGTTTGATGGCAATTGATGAGCAGTTTG
AGACGGATATTTCTGTGTCTTATTTAGAGGTATAAGTAATCAATTTATGA
ATTTCGatcatttttttcgatttctgcCTTTTAACCAGCGCTTTGAAGAA
TAAATCCCatcgatgaagaagaaaacctgTCATTTTTTCCTGAACTCACA
TTGTTCGGATActcttaactttttattttttatgtttttcattCTCTTGA
GAATAATAGCCGCATTCattttcaccgtccaacatatGTTTTTTATGTGA
ATTCCTTGATTAATAAATCAATCTTATAATCTTTCAGAATCTACTATGTA
TATAGCACTGACGATTCCAACGTCAGAAAAGCTGTCTTTGATGTTTAAAT
GCTTGGTTGATTTTACTTTAATTCTATATAAACATTTTATCTGTTCAGAT
ATACAATGAAACATGTAAAGATTTACTTTTACCAACTGGACCTCTGGCAG
TTCGTGAAGACCCAGAAAAAGGCGTCTGTGTTGCTGGCTTATCTTTACAT
AAGGTAGTTAGTTGTATTTTACTTATTCTTTGTATATTCTTTTTAGCGTC
TAGGATCATAGATACATTTATAAACTGTATAAATGTATTATTCTATTGCA
TAAGTTTTCATCATTTCCAGGGCTCACTTGCTCACCTCCTATCAACTTGT
TCAGTCCACCTGCCCTTATAATGTCATTCCCCCTTATCAAttttctaccc
cccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccccg
ccatagaattgtaaattaaaattggtGCCACCTTCAAGGGATCGGACCTG
CAGATGACATAATTCTTTCTTGTACTTAgccaaattattcaaaaatcaaa
agtcTCAAAATCCTATACGTACTTCCGAACTAACCAAATACGATTGTTTC
CCGTGTAAAAACTCATAAATTCTAGAGGTTATTACCCCAACTATGACttt
ttttgagatatttcaatcattttattcatatattttttcacaGCCAAGAA
GTGCAGAAGAATTGTTGGAGATGCTTCATTTCGGTAACCAGAATCGAACG
CAACATCCCACTGACGCCAATAAACAATCATCCAGATCACATGCCGTTTT
CCAAgttcgattttttattttttttccatttaagaCGTTTTATTATTCTC
AAAGCGCTTAAATGTCAAAATTAGTCAATTAGCATAAATNACATTTTTTC
GTTTATAAGACGTTTTATTATTCTCTAGTGCCTAATGTCAAAATTAGTCA
ATTAGCATAAATAAGAATGAGATGATTTTTCATGATACCCAAAACATGGT
TTTACTTACTTACAATGCTGTCAACGCTGGAaaattgttgatatttttgc
tgGACTAATTTCAATTCAATCATCAGAGAATGAGTTTTAGATTCTGGAAT
AAAATTCATTTATCTATAATAAGTGCATCAATTATCATTAATTGTTCAAA
CATTTTAGGTATTCGTCAAGCAACTTCCAAAAGCTTCTGGTATCACGGCC
AGTNtattttttttccatttaagaCGTTTTATTATTCTCAAAGCGCTTAA
ATGTCAAAATTAGTCAATTAGCATAAATACGAATGAGATGATTTTTCATG
ATACCCAAAACATGGTTTTACTTACTTACCATGCTGTCAACGCTGGTaaa
ttgttgatatttttgctgGACTAATTTCAATCATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016220XLOC_016220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028600-exon-sc0000693-1491911889:35140..35668TCONS_00028600-exon-sc0000693-1491911889:35140..35668Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1510915933:35140..35668TCONS_00028600-exon-sc0000693-1510915933:35140..35668Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1575043694:35140..35668TCONS_00028600-exon-sc0000693-1575043694:35140..35668Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1491911889:36038..36142TCONS_00028600-exon-sc0000693-1491911889:36038..36142Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1510915933:36038..36142TCONS_00028600-exon-sc0000693-1510915933:36038..36142Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1575043694:36038..36142TCONS_00028600-exon-sc0000693-1575043694:36038..36142Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1491911889:36683..36793TCONS_00028600-exon-sc0000693-1491911889:36683..36793Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1510915933:36683..36793TCONS_00028600-exon-sc0000693-1510915933:36683..36793Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1575043694:36683..36793TCONS_00028600-exon-sc0000693-1575043694:36683..36793Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1491911889:37148..37376TCONS_00028600-exon-sc0000693-1491911889:37148..37376Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1510915933:37148..37376TCONS_00028600-exon-sc0000693-1510915933:37148..37376Clytia hemisphaericaexon
TCONS_00028600-exon-sc0000693-1575043694:37148..37376TCONS_00028600-exon-sc0000693-1575043694:37148..37376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000693supercontigsc0000693:35140..37376 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.239969	0.226942	0.310581	1.2549	0	0	0	0	0	0	0	0.54052	0.188975	0	0	0	0	0	0	0.337328	0.318724	0.563875	0	0	0	0	0	0.498152	0	0
Blast
[Close]
BLAST of TCONS_00028600 vs. Swiss-Prot (Human)
Match: KI18B (Kinesin-like protein KIF18B OS=Homo sapiens GN=KIF18B PE=1 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 2.621e-78
Identity = 125/217 (57.60%), Postives = 159/217 (73.27%), Query Frame = 2 
Query:  152 VVKVVDNFMLTFDPKEND------QFGGTQKRCSILDKKMRDLNFMFDRVFDDQATNEDVFQHTTKPVIESVLQGFNCSVFAYGATSAGKTHTMLGSPNQPGVIFLTMMELYKSLMAIDEQFETDISVSYLEIYNETCKDLLLPTGPLAVREDPEKGVCVAGLSLHKPRSAEELLEMLHFGNQNRTQHPTDANKQSSRSHAVFQVFVKQLPKASGIT 784
            VV+VVD  +L F+P+E D      ++GGT        KK +DL F+FDRVF + AT +DVFQHTT  V++S LQG+NCSVFAYGAT AGKTHTMLG    PG+++LT +ELY+ L A  ++   ++ +SY E+YNE   DLL P GPLA+REDP+KGV V GLS H+P SAE+LLE+L  GN+NRTQHPTDAN  SSRSHA+FQ+FVKQ  +  G+T
Sbjct:   38 VVQVVDERVLVFNPEEPDGGFPGLKWGGTHDGPK---KKGKDLTFVFDRVFGEAATQQDVFQHTTHSVLDSFLQGYNCSVFAYGATGAGKTHTMLGREGDPGIMYLTTVELYRRLEARQQEKHFEVLISYQEVYNEQIHDLLEPKGPLAIREDPDKGVVVQGLSFHQPASAEQLLEILTRGNRNRTQHPTDANATSSRSHAIFQIFVKQQDRVPGLT 251
The following BLAST results are available for this feature:
BLAST of TCONS_00028600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KI18B2.621e-7857.60Kinesin-like protein KIF18B OS=Homo sapiens GN=KIF... [more]
back to top