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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028602 ID=TCONS_00028602|Name=TCONS_00028602|organism=Clytia hemisphaerica|type=transcript|length=1285bp
tttcctttcatCTTTTCTATCTGCTTCACAAAAACattgtttacttttta
gcaTGATCCTCCAAATACTAAAGAGTGTGTACCAGGTCCTGAGAATGGTG
GTAATTACATCATGTATGACAAGGCCACACCTGGTTTTCAAAAGAACAAC
AGAGCTTTCTCAACATGCAGCAAAGCATCTATGATACCTGTAATTAATGC
TAAAGGTCTTGAAACTCAACAAggatgttttgaaaaaagatattggGCTA
TCTGTGGAAATGGAGCTCACGAAGAAGGAGAGATATGTGATTGCGGAACA
GTCTCAACCTGTGTTGAACAATGCTGTACCCCTCTTGGTTCGAAAACTGG
AACACCGTGCACACTTCAAAACGAGGCATATGAATGCAGTCCAAGCAGAG
gACCTTGCTGTCTAAATGAAACCTGTACTCTTGCACGTGAACATTTGAAA
TGCTTTGATGGAACTGAATGTCAAGAGTCTTTACAATGTGACGGGTTACG
ATACAACTGCCCTGCAAGAAAATTCAAGCCAAACAATACACTTTGTGATA
AAGATCGTAGTGTTTGTATCAATGGTTACTGTCAAGGGTCATTGTGTTTG
AAGTATGGTTATGAAGGATGCCCATGCAAGGATTCAGAAGATAAATGTAA
AGTTTGCTGCATGAAGGGTGACGAGTGTGTCCCGTCCCATGAAATTCTTG
GTATGCCAAACACAACGAAATCCCGAGGAACACCTTGTGACTATTACAGA
GGATATTGTGATGCTCTAGGTGATTGTCAACCAATAGATATGGATGGTCC
CATGAGGCTCCTCTACTTCACATTCTTCACCGAAGAAGGTTCGTGATTTG
ATGTGGACattactaatatttttatatttttGGACCTACCTCCGGGTACC
CCGGTGGAGGTCCTTTAAATTAACCCATGTccgtccgttcgttcgttcgt
tcgtctgttgccagcttttctcgggattggctcattagttttttctgatt
ttttgcacaatgatgcaaaattgcaatgcccaaaatgtgacggagcccga
ttttcggggaaaaaatttttccggccgaaaatgccggaaatatcccggaa
aaactggttttctggcactttctcgagattttatcattagttttttcaga
ttttttgctcaaagatgcgtattaacaatgcccaaaacatggccgagtcc
gacttttgagaaaaaattttctccgaccgaaaatgccggaaatatgccgg
aaatcgccgtttttctggattttcattggactttt Run BLAST on NCBI protein sequence of TCONS_00028602-protein >TCONS_00028602-protein ID=TCONS_00028602-protein|Name=TCONS_00028602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MYDKATPGFQKNNRAFSTCSKASMIPVINAKGLETQQGCFEKRYWAICGN
GAHEEGEICDCGTVSTCVEQCCTPLGSKTGTPCTLQNEAYECSPSRGPCC
LNETCTLAREHLKCFDGTECQESLQCDGLRYNCPARKFKPNNTLCDKDRS
VCINGYCQGSLCLKYGYEGCPCKDSEDKCKVCCMKGDECVPSHEILGMPN
TTKSRGTPCDYYRGYCDALGDCQPIDMDGPMRLLYFTFFTEEGS Run BLAST on NCBI transcript from alignment at sc0000693:70518..73383+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028602 ID=TCONS_00028602|Name=TCONS_00028602|organism=Clytia hemisphaerica|type=transcript|length=2866bp|location=Sequence derived from alignment at sc0000693:70518..73383+ (Clytia hemisphaerica)
tttcctttcatCTTTTCTATCTGCTTCACAAAAACattgtttacttttta
gcaTGATCCTCCAAATACTAAAGAGTGTGTACCAGGTCCTGAGAATGGTG
GTAATTACATCATGTATGACAAGGCCACACCTGGTTTTCAAAAGAACAAC
AGAGCTTTCTCAACATGCAGCAAAGCATCTATGATACCTGTAATTAGTAA
GTAGCAATATTTGGGAATTAAAAAAGGGTTGATAGTCAAGATCTGCCAAT
TAAAAAGGGCTGAATTCCAAGTACCTGATTCTTGACAGTGCCAAACTGCA
AGGGAGAGATGAATGAATTGAAAGTGATCCTTTTACTTATTAAAGTAAGC
CTGAGACCATTTTCATGATTATCTTAATTCTATTAAGTGTTGCGCTTTTT
ATTTTCGAGCTGAATACATGCCCAAACATAAAAAGGGTTTTATTTTAGCA
CCAAAATTAAAAGGTGCGTGAATTAGTTATCTAGTCAGAGCTAGTAATTG
ATATAATTGTCCTTTTTACCTATAttatatttcttcaaaaaactattcaa
aaaatGTCCCATAAATTGCAAGATTCTTGAAAATTAAAGGTTGTgcagat
attcaatttctttgcAAGGTGTGCGAAAATTAAAGgtgcaaaaattaatc
gaaTTGAGGTATTGTTTTTTAATGAATCTCTTTTTCACTGGCCTTCTTTT
GATATTGGTTTCAGCTTTGAAAGGCTCAAAATTTCAATCTGAAGCCAGAT
AGAGCCATATTAAAAAAGGCCTTGCTGCTGTTTATTTTATTACCTTTACT
TTTATTGCTTCATTCGTATACTGGCATAGACAGCCtgtaaaacatcaaat
ttaatTGTGCTAGCCTTCAAGaatattgattataaacataTATCTCATAT
ATCTTGACAttctcagaaaaaaacaaatttttgtttatcaTGTTTTGACT
AgcttttattttgacatttcaGATGCTAAAGGTCTTGAAACTCAACAAgg
atgttttgaaaaaagatattggGCTATCTGTGGAAATGGAGCTCACGAAG
AAGGAGAGATATGTGATTGCGGAACAGTCTCAACCTGTGTTGAACAATGC
TGTACCCCTCTTGGTTCGAAAACTGGAACACCGTGCACACTTCAAAACGA
GGCATATGAATGCAGTCCAAGCAGAGGTGAGCTTTTATGAGTTCCATAGA
TCCATAAAATTTTGGGTGaatatcattttttgaaaattttgatttttagg
gccTGGGGACTGTAAATCTAAAAGCAAACTTCTGATTTTGTAAAAGACAC
CCACTTACATATGCATCTTaataccccccccccatttCTAAAAACTTCCC
CTTTTCTACATAAAAATCTCTTACCTCCCCTTCTGACGGCTTCTGAGATT
ATTCGCCCTCTCCCCTTATAAAGAGGGGGCTAGGAACTATGTATGGAATC
CTAAATTATGGCAGGCTCCTGCAATTACTTTACCTTAAGCCAAAAAGTAT
ATGGTATGATCATAGTCTAAACAAACAAACTACATTATACTTTGTCCTTA
TATCATTgtgtttgaatttgattttaggACCTTGCTGTCTAAATGAAACC
TGTACTCTTGCACGTGAACATTTGAAATGCTTTGATGGAACTGAATGTCA
AGAGTCTTTACAATGTGACGGGTTACGATACAACTGCCCTGCAAGAAAAT
TCAAGCCAAACAATACACTTTGTGATAAAGATCGTAGTGTTTGTATCAAT
GGTTACTGTCAAGGGTCATTGTGTTTGAAGTATGGTTATGAAGGATGCCC
ATGCAAGGATTCAGAAGATAAATGTAAAGTTTGCTGCATGAAGGGTGACG
AGTGTGTCCCGTCCCATGAAATTCTTGGTGTAAGTTTGCATTCCAAGTTA
TTTATAATTTAGAATCTTGAAGGTTCCTTCAGGAATTCTTGTCTAATGTC
TAATTATTATAATACAGTAACTAAATTTTTGTGGGAACTAATTGGCAAAT
TTGAGTCTTACCAAAATTTAGCCTTGTCAAAAACCCAAAATTAGTATGAT
TCgattgtaaatattttgcagagCAGAATTCTAATAATTATCTTTTCATT
CTCCAAAATTAATTCCACCaagatttttaagaaatattattcgccaaaat
aaaacaGTTCGCTTAAGCTAGTTACTAAATACTAAATTAATCTTTTGCCT
CATAAAATTGCACGGAAGAGtgaatgtttattttttttgacatcaaaatt
tttaattattgcATTTACTTGATATCACTGTAGATGCCAAACACAACGAA
ATCCCGAGGAACACCTTGTGACTATTACAGAGGATATTGTGATGCTCTAG
GTGATTGTCAACCAATAGATATGGATGGTCCCATGAGGCTCCTCTACTTC
ACATTCTTCACCGAAGAAGGTTCGTGATTTGATGTGGACattactaatat
ttttatatttttGGACCTACCTCCGGGTACCCCGGTGGAGGTCCTTTAAA
TTAACCCATGTccgtccgttcgttcgttcgttcgtctgttgccagctttt
ctcgggattggctcattagttttttctgattttttgcacaatgatgcaaa
attgcaatgcccaaaatgtgacggagcccgattttcggggaaaaaatttt
tccggccgaaaatgccggaaatatcccggaaaaactggttttctggcact
ttctcgagattttatcattagttttttcagattttttgctcaaagatgcg
tattaacaatgcccaaaacatggccgagtccgacttttgagaaaaaattt
tctccgaccgaaaatgccggaaatatgccggaaatcgccgtttttctgga
ttttcattggactttt Coding sequence (CDS) from alignment at sc0000693:70518..73383+ >TCONS_00028602 ID=TCONS_00028602|Name=TCONS_00028602|organism=Clytia hemisphaerica|type=CDS|length=2940bp|location=Sequence derived from alignment at sc0000693:70518..73383+ (Clytia hemisphaerica)
ATGTATGACAAGGCCACACCTGGTTTTCAAAAGAACAACAGAGCTTTCTC
AACATGCAGCAAAGCATCTATGATACCTGTAATTAATGCTAAAGGTCTTG
AAACTCAACAAggatgttttgaaaaaagatattggGCTATCTGTGGAAAT
GGAGCTCACGAAGAAGGAGAGATATGTGATTGCGGAACAGTCTCAACCTG
TGTTGAACAATGCTGTACCCCTCTTGGTTCGAAAACTGGAACACCGTGCA
CACTTCAAAACGAGGCATATGAATGCAGTCCAAGCAGAGgACCTTGCTGT
CTAAATGAAACCTGTACTCTTGCACGTGAACATTTGAAATGCTTTGATGG
AACTGAATGTCAAGAGTCTTTACAATGTGACGGGTTACGATACAACTGCC
CTGCAAGAAAATTCAAGCCAAACAATACACTTTGTGATAAAGATCGTAGT
GTTTGTATCAATGGTTACTGTCAAGGGTCATTGTGTTTGAAGTATGGTTA
TGAAGGATGCCCATGCAAGGATTCAGAAGATAAATGTAAAGTTTGCTGCA
TGAAGGGTGACGAGTGTGTCCCGTCCCATGAAATTCTTGGTATGCCAAAC
ACAACGAAATCCCGAGGAACACCTTGTGACTATTACAGAGGATATTGTGA
TGCTCTAGGTGATTGTCAACCAATAGATATGGATGGTCCCATGAGGCTCC
TCTACTTCACATTCTTCACCGAAGAAGGTTCGTGAATGTATGACAAGGCC
ACACCTGGTTTTCAAAAGAACAACAGAGCTTTCTCAACATGCAGCAAAGC
ATCTATGATACCTGTAATTAATGCTAAAGGTCTTGAAACTCAACAAggat
gttttgaaaaaagatattggGCTATCTGTGGAAATGGAGCTCACGAAGAA
GGAGAGATATGTGATTGCGGAACAGTCTCAACCTGTGTTGAACAATGCTG
TACCCCTCTTGGTTCGAAAACTGGAACACCGTGCACACTTCAAAACGAGG
CATATGAATGCAGTCCAAGCAGAGgACCTTGCTGTCTAAATGAAACCTGT
ACTCTTGCACGTGAACATTTGAAATGCTTTGATGGAACTGAATGTCAAGA
GTCTTTACAATGTGACGGGTTACGATACAACTGCCCTGCAAGAAAATTCA
AGCCAAACAATACACTTTGTGATAAAGATCGTAGTGTTTGTATCAATGGT
TACTGTCAAGGGTCATTGTGTTTGAAGTATGGTTATGAAGGATGCCCATG
CAAGGATTCAGAAGATAAATGTAAAGTTTGCTGCATGAAGGGTGACGAGT
GTGTCCCGTCCCATGAAATTCTTGGTATGCCAAACACAACGAAATCCCGA
GGAACACCTTGTGACTATTACAGAGGATATTGTGATGCTCTAGGTGATTG
TCAACCAATAGATATGGATGGTCCCATGAGGCTCCTCTACTTCACATTCT
TCACCGAAGAAGGTTCGTGAATGTATGACAAGGCCACACCTGGTTTTCAA
AAGAACAACAGAGCTTTCTCAACATGCAGCAAAGCATCTATGATACCTGT
AATTAATGCTAAAGGTCTTGAAACTCAACAAggatgttttgaaaaaagat
attggGCTATCTGTGGAAATGGAGCTCACGAAGAAGGAGAGATATGTGAT
TGCGGAACAGTCTCAACCTGTGTTGAACAATGCTGTACCCCTCTTGGTTC
GAAAACTGGAACACCGTGCACACTTCAAAACGAGGCATATGAATGCAGTC
CAAGCAGAGgACCTTGCTGTCTAAATGAAACCTGTACTCTTGCACGTGAA
CATTTGAAATGCTTTGATGGAACTGAATGTCAAGAGTCTTTACAATGTGA
CGGGTTACGATACAACTGCCCTGCAAGAAAATTCAAGCCAAACAATACAC
TTTGTGATAAAGATCGTAGTGTTTGTATCAATGGTTACTGTCAAGGGTCA
TTGTGTTTGAAGTATGGTTATGAAGGATGCCCATGCAAGGATTCAGAAGA
TAAATGTAAAGTTTGCTGCATGAAGGGTGACGAGTGTGTCCCGTCCCATG
AAATTCTTGGTATGCCAAACACAACGAAATCCCGAGGAACACCTTGTGAC
TATTACAGAGGATATTGTGATGCTCTAGGTGATTGTCAACCAATAGATAT
GGATGGTCCCATGAGGCTCCTCTACTTCACATTCTTCACCGAAGAAGGTT
CGTGAATGTATGACAAGGCCACACCTGGTTTTCAAAAGAACAACAGAGCT
TTCTCAACATGCAGCAAAGCATCTATGATACCTGTAATTAATGCTAAAGG
TCTTGAAACTCAACAAggatgttttgaaaaaagatattggGCTATCTGTG
GAAATGGAGCTCACGAAGAAGGAGAGATATGTGATTGCGGAACAGTCTCA
ACCTGTGTTGAACAATGCTGTACCCCTCTTGGTTCGAAAACTGGAACACC
GTGCACACTTCAAAACGAGGCATATGAATGCAGTCCAAGCAGAGgACCTT
GCTGTCTAAATGAAACCTGTACTCTTGCACGTGAACATTTGAAATGCTTT
GATGGAACTGAATGTCAAGAGTCTTTACAATGTGACGGGTTACGATACAA
CTGCCCTGCAAGAAAATTCAAGCCAAACAATACACTTTGTGATAAAGATC
GTAGTGTTTGTATCAATGGTTACTGTCAAGGGTCATTGTGTTTGAAGTAT
GGTTATGAAGGATGCCCATGCAAGGATTCAGAAGATAAATGTAAAGTTTG
CTGCATGAAGGGTGACGAGTGTGTCCCGTCCCATGAAATTCTTGGTATGC
CAAACACAACGAAATCCCGAGGAACACCTTGTGACTATTACAGAGGATAT
TGTGATGCTCTAGGTGATTGTCAACCAATAGATATGGATGGTCCCATGAG
GCTCCTCTACTTCACATTCTTCACCGAAGAAGGTTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028602-exon-sc0000693-1491911889:70518..70713 | TCONS_00028602-exon-sc0000693-1491911889:70518..70713 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1510915933:70518..70713 | TCONS_00028602-exon-sc0000693-1510915933:70518..70713 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1575043694:70518..70713 | TCONS_00028602-exon-sc0000693-1575043694:70518..70713 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1491911889:71490..71693 | TCONS_00028602-exon-sc0000693-1491911889:71490..71693 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1510915933:71490..71693 | TCONS_00028602-exon-sc0000693-1510915933:71490..71693 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1575043694:71490..71693 | TCONS_00028602-exon-sc0000693-1575043694:71490..71693 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1491911889:72095..72396 | TCONS_00028602-exon-sc0000693-1491911889:72095..72396 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1510915933:72095..72396 | TCONS_00028602-exon-sc0000693-1510915933:72095..72396 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1575043694:72095..72396 | TCONS_00028602-exon-sc0000693-1575043694:72095..72396 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1491911889:72801..73383 | TCONS_00028602-exon-sc0000693-1491911889:72801..73383 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1510915933:72801..73383 | TCONS_00028602-exon-sc0000693-1510915933:72801..73383 | Clytia hemisphaerica | exon |
| TCONS_00028602-exon-sc0000693-1575043694:72801..73383 | TCONS_00028602-exon-sc0000693-1575043694:72801..73383 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000693 | supercontig | sc0000693:70518..73383 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008237 | metallopeptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
Blast
BLAST of TCONS_00028602 vs. Swiss-Prot (Human)
Match: ADA10 (Disintegrin and metalloproteinase domain-containing protein 10 OS=Homo sapiens GN=ADAM10 PE=1 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.484e-43 Identity = 105/274 (38.32%), Postives = 137/274 (50.00%), Query Frame = 1
Query: 73 ECVPGP------ENGGNYIMYDKATPGFQKNNRAFSTCSKASMIPVINAKGLETQQGCFEKRYWAICGNGAHEEGEICDCGTVSTCVEQCCTPLGSKTGTPCTLQNEAYECSPSRGPCCLNETCTLAREHLKCFDGTECQESLQCDGLRYNCPARKFKPNNTLCDKDRSVCINGYCQGSLCLKYGYEGCPC-----KDSEDKCKVCCMKGDE--------CVPSHEILGMPNTTKSRGTPCDYYRGYCDALGDCQPIDMDGPMRLLYFTFFTEE 837
EC PG + GNYIMY +AT G + NN FS CS ++ V+ K + CF + ICGNG E+GE CDCG C ++CC G C L+ +CSPS+GPCC + C + KC D ++C C+G CPA KPN T C++ VCING C GS+C KYG E C C KD ++ C VCCMK + V T G+PC+ +RGYCD C+ +D DGP+ L F+ E
Sbjct: 398 ECTPGESKNLGQKENGNYIMYARATSGDKLNNNKFSLCSIRNISQVLEKK----RNNCFVESGQPICGNGMVEQGEECDCGYSDQCKDECCFDANQPEGRKCKLK-PGKQCSPSQGPCCTAQ-CAFKSKSEKCRDDSDCAREGICNGFTALCPASDPKPNFTDCNRHTQVCINGQCAGSICEKYGLEECTCASSDGKDDKELCHVCCMKKMDPSTCASTGSVQWSRHFSGRTITLQPGSPCNDFRGYCDVFMRCRLVDADGPLARLKKAIFSPE 665
The following BLAST results are available for this feature:
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