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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028603 ID=TCONS_00028603|Name=TCONS_00028603|organism=Clytia hemisphaerica|type=transcript|length=4399bpRun BLAST on NCBI protein sequence of TCONS_00028603-protein >TCONS_00028603-protein ID=TCONS_00028603-protein|Name=TCONS_00028603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1075bp LEHFRTLKNIVTFTMVDQRDGCEEIKTYITSEDTMIVKEYKNIIQEDLYSRun BLAST on NCBI transcript from alignment at sc0000693:88494..102969+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028603 ID=TCONS_00028603|Name=TCONS_00028603|organism=Clytia hemisphaerica|type=transcript|length=14476bp|location=Sequence derived from alignment at sc0000693:88494..102969+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000693:88494..102969+ >TCONS_00028603 ID=TCONS_00028603|Name=TCONS_00028603|organism=Clytia hemisphaerica|type=CDS|length=51648bp|location=Sequence derived from alignment at sc0000693:88494..102969+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028603 vs. Swiss-Prot (Human)
Match: TSC1 (Hamartin OS=Homo sapiens GN=TSC1 PE=1 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 3.193e-35 Identity = 84/252 (33.33%), Postives = 141/252 (55.95%), Query Frame = 3
Query: 129 IIQEDLYSSRGASLLDTLIECFMQTKSKRLVELLIGINDSLCMRLFDKLNENL-KHGHHAEVAGLLFSIINKQPYWLHKIVGTGLFATLLKKLNKIDNDFSLLMNGIIILSSLLPCVPADFGPYFNELFEILMHSACLLLKPIEYIFRDTPPVCSLHLHVGVYVFFQRLYSMYPNNFISHMKAYVSREEKKGNEVFTKIIRPLFDFVKLHPDLIIQSHKTETSLNRWKVLQPHDVLAECQRISLDPLDCVKE 881
+ +E+L S RG L++TL++ +++T S+ + +L + + L D++NE + K + LL +I QP W HK+ L +LLK L K+D D +L G+++L ++LP +P + + F+I + LK ++ V +HLH VY F RLY MYP NF+S ++++ S +E E F ++++P+ + V++HP+L+ S E RWK L+ HDV+ EC +ISLDP + E
Sbjct: 28 VFKENLNSDRGPMLVNTLVDYYLETSSQPALHILTTLQEPHDKHLLDRINEYVGKAATRLSILSLLGHVIRLQPSWKHKLSQAPLLPSLLKCL-KMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVAE----VYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMKENL--ETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRWKRLETHDVVIECAKISLDPTEASYE 272 HSP 2 Score: 92.0485 bits (227), Expect = 1.515e-18 Identity = 85/336 (25.30%), Postives = 170/336 (50.60%), Query Frame = 3
Query: 1914 SRSPVQILDDFIQYGTELNSLLVSRIPMTSQIETDWSHYGSGGAVDEIKILQTQVQMMHTQLQYERYKSEMHCIRNRRLFANLQRSNEAISTVESLRTQLTLTERKLQEEKRTLKAKNDEIRMLKTMFSSRERELNSRISELEDSSRVL---SYKLKTTEATKQNEFTNNKLLQKELHKVKNLLFEATEEISRFQPKIKNIQSLNSNVNDLQKQLSVQIHKYEKLKNSIEDFQVKNNHDVLLSQKLKCT-QHALQSLQAEREEQKTKLEVLKIKINELENSNTKKDKVISEMKDRAQHINTRHKTEIGVIKERHESCRKTCQSLQSYITQLYSKFD 2909
S SP+++LD IQ G + +S ++++P+ S+ DW+H+G DEI+ L+ Q+ ++H QL YER+K + H +RNRRL + ++ +++ QL L E+ +Q K +L+ + L+ + +L+S+I +L+ S +L+T +N L+ EL K N + +S+ K+ N +S+ + L +QL V + + +L +E Q K++ + +K + L+ ++ +Q +L+ + +I ELE+ KKD ++ E K + + + + ++ + R+E+ ++ Q + I LY + +
Sbjct: 642 STSPMEVLDRLIQQGADAHSKELNKLPLPSK-SVDWTHFGGSPPSDEIRTLRDQLLLLHNQLLYERFKRQQHALRNRRLLRKVIKAAALEEHNAAMKDQLKLQEKDIQMWKVSLQKEQARYNQLQEQRDTMVTKLHSQIRQLQHDREEFYNQSQELQTKLEDCRNMIAE---LRIELKKANNKVCHTELLLSQVSQKLSNSESVQQQMEFLNRQLLV-LGEVNEL--YLEQLQNKHSDTTKEVEMMKAAYRKELEKNRSHVLQQTQRLDTSQKRILELESHLAKKDHLLLEQKKYLEDVKLQARGQLQAAESRYEAQKRITQVFELEILDLYGRLE 970 The following BLAST results are available for this feature:
BLAST of TCONS_00028603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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