TCONS_00028606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028606
Unique NameTCONS_00028606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1926

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028606 ID=TCONS_00028606|Name=TCONS_00028606|organism=Clytia hemisphaerica|type=transcript|length=1926bp
aatgtttgtatttttctttggcGGACTAGTACATGGAAAAAAAGGAATGG
TTACAAGATGAGATTATCAAAATCACAGGAAACTTACAAAAAGATTGGAA
CAAAGGAATTCTTGTGGCAAGAAAAGAATTTGAGCTTGCAAAAGATGTTG
CTTTGATCAACTACAATATGCTAAGAgaatGCATTGGAAAGTTAAATGTT
ATTCTTCGTTCATGTactaacaacaacaacaatgaaaaagttatgtTTGG
ATTAAGAATCAAGGATTCAAAATCAATATTATGGAAAACAACAACCAGAG
TTCTATGCTTGAAGGTAAATCTTCTTCAGAAAACTGTCAAGTTGGTTCGA
ACACTGACAATATCTGGCTTTTGGAGATTGAGAGCAGAAATTTTGGAGGA
GGTGCGCTATAAGAATCTTCTAGAGAGTAGTTTAATGGAAGATTTCCAAT
TGATTGATCATGATGGTGAAGTTgtgaaagatgaaaatgaagaagaagtt
ATGACGAATACAGATTTGCCAGTTCCTTGCTCGTTGACAACATCTGGaat
atttaaaaaGGTTGAGATGGTGACATTGGATGATAACACCGAATGCTTGA
TTTGTATGGataacaaaattgaagtttcaTTACCTTGTGCTCATAGTTTT
TGTACAGCTTGTATAAGCACGTGGCACGACACCAATAAAAGTTGTCCAGT
ATGTCGAGATCATTTGGACAAGACTGAAGATTGCTGGGAATTCACTGATT
TGCCAGATTTAGAAGAAATCAACGAAAAAGTAGTCGAACTGGCTACCGGA
GATTGAGAAGGGATGAATACTAAACACTTCTTTTAATATCGTCATTCGAC
AGGGAATcctcaattcaattcaaagatAAGCCTTCTCCATCCATAACTAT
TGATACCATGTGGTCGAACATACTACTAATCAACCTGGtttccttttaaa
ttttgatgcatcaaaaaagcaaaggagaatgcaaaaatttcattattttt
gcgTTTAAGTTTGAAACTTAACTGTGAAGGTGCAGAACTTTCAATACATT
TCATCAATGAGGCCGCCAGTAGTTGTTTAAGGACAAATTCTATCTATAAA
ACTTCAACGATGTATGGTGAAAAATCTATCGTCATATCagacaaaacatt
tgaaaaaatcgAATTCTGCGTCAAAGAACTTTAACTGCAAAAAATCGCCA
AAGCTATTTCTTCCAAATTCTGGAAAGAAACGGGTGTCTTCAACCAAAGT
TTCGTCATCACTATCAACAGTCTTTAAATCCGCAAAGGTTCGACCCCTCA
GGAGAAACAACGCAGTGAGAAAGAACACTTGCTTTATTATCATGGAAACC
TCAAACTGCCATGCACGACCTCGATTCTTGGTGCCAAAGGGATGCCAGAG
CGAGTGTATGCATGTATGTGTGTTTTGCTGCGACGGAGACTTTTAGCTTC
TGATTGGTCTAGATCCTCAATGCGCTGAGGTCGACATTAAAAAACAGTTT
TACCGTTACCAAACAAGATCGTGTCGGTAGAAGGCTCAATTTTGAGAACT
TTCGAACTCGAAGAAGGCCATCATAACATTATGAACAATGTGTGAAATTA
TCTTTATATAATTTTGTTACTTCTTTtaattaagaacttaaaaagaactt
aaaatcaaaaacttttaatttctgAATATTTAAAGGCTCagattgttttc
aatttttgccaaattttagtCTCGCGTTCTCATAAAATAtgtgaagtaat
ttttcttatTGTATTTTGTAAATATACATCATGTaaatatgatcaattaa
agtgATAAATTCACCATAATAAGTAAGTAAGacacaatgggctcttccag
aaaaaaattttacatggggggtggaggaggatattttgtccaggcaaaaa
atcatcaaaatttgccttgtctgggg
Run BLAST on NCBI

transcript from alignment at sc0000693:10262..23853-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028606 ID=TCONS_00028606|Name=TCONS_00028606|organism=Clytia hemisphaerica|type=transcript|length=13592bp|location=Sequence derived from alignment at sc0000693:10262..23853- (Clytia hemisphaerica)
AATGTTTGTATTTTTCTTTGGCGGACTAGTACATGGAAAAAAAGGGTAAT
TGGAAAATCATTTTCTGTTAGACAATTTTGAATATGTCTTCGTTACTATT
CAGCCTTTAGTTTTGCTCAAAAACATTTAAAAAAACAGCCAAAACATGCT
TAGAAAGTGACCCTCAATGGACCCCATCCCTTTATTTACAATTGTCGTAC
TTTGGCGGCCATTTAATTTCAAAACTATACTTCATCGCAGAGGTCTCCGT
ACGGAAAAACTTTTATCAAACAGACAATGCGCACAGAGTGAACTACGCTA
CGATAATCGTGAGATACACTCTGGTACAGAGTACCTTACCACCCGCCCCT
GAGCTCAGTTACTGGCGTGATAGACCTTTTTTCAAAGAGGGCACCCTGTT
GAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATGGATAATT
ATTACAATATGCATGATACAGTAATTATGCCACGGCTCTATCATTGTTTT
TATGGCTGGACTACATAATTATTCAACAGGCAGTTTGTTTACAGGTCTCT
TCCCACCACCACACAGTTCTAACTTTGATTTTTTGGATTGCGAGGATGAG
ATGACATGACATATTGTCTAAATCACAAAAAACCATGGCTATTGCTGTCA
AAGATGTTTTAAAAAATGTTCTTCCAGAATGGTTACAAGATGAGATTATC
AAAATCACAGGAAACTTACAAAAAGATTGGAACAAAGGAATTCTTGTGGC
AAGAAAAGAATTTGAGCTTGCAAAAGATGTTGCTTTGATCAACTACAATA
TGCTAAGAGGTATATATAATTTTTATGATCTTGCTTTCAGGTTGGCAGAC
GATATCATCCACCAGGATGCAAGTGAAATTTTTCAATCTGCAGATCTAGA
CGAGGTTTCGGCTGGGTTTATCATAGACCTTTTTTTAAAGAGGCAGCCAT
GTTGAATAATTATCCAGACGTCCGCGCTCGATAGGATCGATCATCGGAAC
GGCTCGATGATGAATCGATATGTGATCGATGGATTACTTAACGATCCGGA
TAGGAGATCGATAGAGGATCGATACTCAAGATAGACCTTTTTTCAAAGAG
GACGTCCTGTTGAATAATTATATGTAGTCCAGCCATAAAAACAAGGATAG
TATGTATGCATTTGTATTTTAATAATTATGCATGGTTTTATCATTGTTTT
TCTGCTGGACTACATAATTATTTAACAGGGTGGCCTCTTTCAAAAAAGGT
CTATTTTTTTAACTTTTAAGCTTGTGATTAGTTATCGATTATCTATCGAT
CTATCATCGATCTTTTATCGATCTTATCGACCCTATCGACTCATACTCGA
TTTACGATCGATAACAAACCGATTAACGATCGATGACAAATCGATTAACG
ATCGATGACGAATCGGTATACTCGATTAAAAATACTAGCTCGATAATGGA
TCAACGAAGGATCAATACTCAAGACTTTTTAATGGCTGAATCTTCCATCG
ATCTCCTATCCGGATCGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
GCCATGCATAATTACTATATCAAGCATATTTTAAAAGTTATGCATGGCTG
TATCATTGTTTTTATGCTGGAGTACATAATTATTCAACATGACTGCCTCT
TTAAAAAAAGGTCTATTATAGTTAGGCGGCAATCAGAAATATCTTCGTTT
CGCGTCGCCTGACCGACTCTCGAAAATTGAGTAGAATTGAGTCCGTGAGT
CGGTAAATTTGTCGGACTTTTTCTGTCAATGACCTTTCCTTAGTTATAAA
ATTTTATTATTGCTGATTTTTTGCGAGTGATTTTTAGCGCATTCGCAGCA
TTTTGACTTTGTTTATCATTACATGCACCATTTTGGGGTCGAAGGTCACA
GTGTTCAAAGCAGTTGTGCNAAAAATTAAAAATTGAATATCTCGAGAAAT
ACTCATCAAAATCACAGTTGTGTTGAAGTTTTTATAAGATGCTCACATAA
TTGGTTATTCAAAACAATAGAGATGACGCGTTCTTTAGAAAAACATAATA
AAAGTTTTTGTTTGAATAGTTAACGACCAATCCAATGACAAAAATTCTTG
TAAAATGTTCAACTTGACCCGTTCAAAGGTCATAATTTTAAACCACCCAT
TACATGCGGTTGTTTTGGCTGCTGGCTGGCTGGCAGTTTCCTCCAAGAAT
GCACTTGAAAAATGGATGGAAAAATGGAAACCCGAAAATTTTTACGACCG
ACCGACTCACTTTTTAGACCCAACGAGGACGCGAAATGAAGATATTTGTG
ATTGCCGCCTTAGTTAGGGTTAGGGTTGGAGCTCGAGAGTCACAATATAA
GGCTGAAGGCCTTCTTAGGGACATTCGTACCCTGAGACTTAACTTTAGAT
CCCATAGGGATCCTTGTAGGTCACTGGTAGGGTTGGGATCCCGGGAGCTT
TCTTTGGACTAAGGTCTGTCAGTCTTAAACTTAAACTCCTACCGTGAGAT
TGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATGATAG
ACCTGGCTGGTCATTAAAATACAAAAATAAATCAAAACAAAAATAGTAGA
GTAGAGGCTGCGAGCAGACAGAGCTGCGTAGTTGTATTTTAATGACCAGT
CAGGTCATTCATTTGAGAGCTATGCATGTTAGCCTCCACTGATGCAAGTT
ACCCAATATCACGGTATATCAGGATTAGAAACTAGGCTAGTCTTACCTCT
TTTATCTTTTCCTTTACAACAATACAATGCTGATACAACACTTGTGTACA
TGTACATTGACAAGTAATCCCTGAGAGAAGTTTTTATAGAAATCTGCAAC
AAAAACGAAAGTGTTCTCTTCTACTGATTGCTTCCCAGCGCTCCTTCACA
GCTGTTTATCAAGTTTCCACCAATGAGGTTGCCACATTTCCAGACGGTGT
CAATCGAACAACTTCGAACAAAAATCGCAATCGAACCAATCGAACGTAAT
CGAACACGATCGCATAATTGCGATTCGATTGTCGAACGTAGTAATCGAAT
CTCAATCGAACGGCCAATTCCTGGGTAATATTTGATTGTGTTCGGTTGCG
TTCGAGTAAGGTTAGATTGGTTCGATTAATAGTTGACTATGTTCCATTGG
TTCGATTACAATTATGTTTGATGAGTTTGATTGCAATTAAATTAAATTGG
ATCACTCTGTTAGAGCTTTTTAGGATGGGCGGCCGAGCACTTATTAAGTA
TTGTACGAAAGCGAATAAAATCTAAATCAATCGAACGTACTTGAATACAA
TCGAACGTAATCAAAGCAATCACACGGCAAATCCTGGGTAATATTCAATT
CGTTCAATTGACACCGTCTGGACATTTCAAACGACCCTTCTTTTTGGCAC
CCGTGGCCTTTCAGTGCCTTGAACGACGGGCGGCTATAAAATCCCACCCT
TCATATATTTGTTTCAATCCGTGATTCGTGGCTTAGGTTTTTTCTCATCT
TCAATTTACTGAAGAAAGCGGGAATTTGATGCAAGAGTTAGATTGTCAAC
AAAGTGCCATAAAAAATCATTCTGAATCATTGAATAAAAGGAGAACTGAA
AATCTTAAATATTTTCATTTTGAAGAATATGTGCAAAAAGTGAAACATAG
AAAAGTTTCATTTTTCATTGCATTAATCTAAATGGAGGATTTGGAAAATA
TTCTATGTTTAGTTTTTGCACAAACCCCTGTAACTATGGGCGAGCACCCT
GTTGCTAAGATGTTTGCTTGAAATCGAAAATGAAACCACTCAAAACAAAA
GTAAAATCGGCCCGTACTCATAATCCCATAATCTTGATATAAGAGTTTAA
GTCTATACTGTCTGTAAATTACACGCTATAAAGCGGCCAAAAATTGTTCT
GTTCGCGTCGCAACAGGTGTTAAAAATGCATGCGGGTGGACGGGCGGTCA
GAATTTTTTTTTTTTAAATCGCTTCTTTAAGTCAGGGGCAGGTGGTGATA
CGAACAGAACAATTTTCTGATGGCCGGCAGAGGCCGCCAGAGTGATCAAG
TAAAAAGCTATACGTCAAAAGAACAATTTGCTTTTTCCTGATTTCTTCCC
GCATCTCCGCACCAGAAAATCAGGGGAAAATATGATGCGGGCAGGTAACG
CAAATAGAACAGTTTTTCGATGGCCGCCTAAGTATTTGTGAATGACAGCT
AAACTGTCGTGTCTCGTTGGTGCAAGTGGTTAGGCGTTGGATTTGAAAAC
CAAGGTTGCTTGCATTTGGTGGTTAGAGCTGGGGTCAGAGACCTTTGGTC
TTTGGGTTTGTTTCTGATGTTTTTCCTTCAAAGAATATTGATCACTTTCC
TTTTCCCCTTGAGCGGGCAAGAAAAAAAATGATTAGCTCGGTTCTTGCGC
AAGCAAATAAAGATGAGGCAGCAATCTTGCACTGAGGGTGCTACTTAGTT
TTGGCCTTATTTTCGCCCACGATAGAATGGTCCGAATACGGGGATATTCC
AAATGATAAATGTTGTTCTAAAGTATTATAAGTGTTTATTTTCTGAGAGA
TACAAATAGTATTGAATATTATTAAAACTTATTTATTTAAGTATTTTTAA
GTGATTTGCGCGAAATTGTTTCAAAATGAAAAATGGCACGGTTTTCCAGA
TTATATTGAACTGGCTGTGAGATAATTAAACTTTTTTTGGCCCAAAATTA
GTGTATTGGTGTTGTTGTGTTGGAACAAGCAAAAAAAAATTACAAGTGAT
TATGGAATGAATCACTTGAATGGGAATTTTTTTGGATTTTCCTCAAAATT
TGTCCTGCACACGACGCGGTTTAGCAATATATGCAGTTTTGAAATGTCCA
ATGCGCCTTTCTTGACAGATTTACATACCTTGTTATGCATTTTTGTTTTT
GTAAGTATACTATTTAGAATTAAATTTAGAAACAAAATTTTCTCTTATAA
TATCAGTTAGTGAAGGCCTATGCGCCTTTATTGCAGCAGACCAATTTTTT
GTCCCGTACACAACAACTACAATTACACTGCTTCAAATATCAATGAGGAA
AAAAGCTTTGCCCAAAATTTGTTTTTTTTTCCTTTTAGGTTATTACCTAT
ATATGTGTCATGTTTTTCAGACACTTTCATCTGAAAATAAATTTGCGCTG
AGACGCTCATCATGCTGAAAAAATCACACTTGTCCCGTACGTCATAGAGT
GAAATACTCAAATCAATAATATGTACAAGAAATGTTTTGTATTCCTGAAG
TCACTCTTATTTATGTATCAAAAGGCACTAAAAGTTTTACGTATCTTTCT
TTTTCGGGATATTTCACACTTTGTATGTTGCATACGGGACAAAATTAGGA
TTCCAATTTGTCCTGTACGTGACAAAATTTGAAAATCATTAAATTTAACA
AGAAAATTCTATTTTGACCAAATCTTTTGCATTGATTGGTACATCTAGAC
CATATTGCTTGTTTGGATATTCAAGATTTTTCAAGTTTGTTGTATAAATC
AAAGTTATTGAAGGTTAAAGAGTGATTTTCCCCTATTCTTGTAAAGTGTG
ATAAAACTATTTTTTTCTTAAAACCTGACCCCTAGAGGATACCAAAGTAT
CAAATGAAGTTAAATTTTTGAAGAAAAAAAATGTTGAGATTTTTTTCAGC
CTTTTGGAACAATTTCATGCAAATCACCCTTTTAAGCGCAAATTTGAATA
TATGGTTGAATAAAAAACAAATGATAAAGCAGTTCTGTTTTTTCCTCAAA
CCCCCAGAAATTTTTTTTTGCCAACTTAGCTACTTTACAAATCTCAGAAA
AGAACTCCCATGGGAATTCCGATACATAACCAGATTGGCTAATTTCGGAA
CGACTTCAAGAAAGTCATAGTGGCAGATAATTTTAAAACTTTCTGAGAAA
ATGTGTGGAATTCATCAATGTTGATGGCTTGTTGATTCTTTAAAGAAAAA
ATACAACAGGTATAGATTCAGCCATTCTAATTAGCATCAGCGTTCGGCTA
TTGCCAACGTAAAAATGCCAACACAAATATCAACGTAAATTTGGCTTTTG
TCGACGTAAAAGTGCTTACTGTACTATAGAACCCAGAATTTTTTGCCAAG
GCACACTAATCTGAATTAGAAAGGCTGAGCTTTTTCTAATCCTGGAATAT
CAAGGTTCCAGCTGCACTGATACAGCACTGGAAAGATGAGAAAGGTTGTC
CTTTTATTTGTTCATAAAAATATGCCCTGTAAATATATGTTTAAATGATA
TCCTTAACTGTCAGCTTGGGAAAAACTGTGTATTTCCATTTTAAGAAATG
ACGCACAAANTGCCCTCGGTCAACGCAACAACCTCGCAAGCTCGGTCGTT
ACTTGACCTCGGGCAATATTTCTCAGTACAGCCCTCACTAACCGGTCATT
ATTGTATTATTGTTGAAGGTTACTTCAGATTGATTTTCCTCAATATTGAG
ACCACCAATCACTTTGAGACCAGTGTTGCTGCAAGGGTTCTATAACTGCC
ACTGCGTTCGATTCAGCTCACCTCAGGCCAGTGTAACCTGAAAGGAGAGG
TTCATCAGGGACATTACACATGAAATTATCAAGTTTACGTTTAAAGGCAT
CCTTAGTGCAGTTAGTAAGGTTTCTTATTGCTTTCGGCATGCAATTAAGC
AGCTTGGGACCCTGCATGCGAATGGAATCATACATTTGACTTTGGTAGCT
ACTTTGCTTAATCAATGGGATATTGCAGTTTCTCCTCTGTCTAGGATTTA
TGTACCACGAAATTTCTCTGTCTCCACCTCCAACTCCGCCAATATTTTGT
GTTACTCCTTCAAGGATGCCCCATGTATAGATGATGATGTACCTTTCTCT
GCGCCTTTGTAGTGAGTACAACTTTAGGGGTCCCCAGTCTTTCCCAGTAG
TCTATAATTATTCTTGAGACCATTGATGCTATTGATTTGTCTTGTGAAAG
ACTTTTGAATTTGTTCGATTGATTGGATACTTTAATCCCTTTTTCGAGTG
GATTCCATAGTTGGGAGCAATAATCGAGATGGTGGATGACAAGTGATTTC
GACAGTGTAAGCATTATACATCTTGATCCCTGGATTTGCAGATTCGTATG
ATCAATCCCACAAGCTGAGTTGCTCTTTTGATCACTCCATTGATATGAAC
TTTCTAGCTCCAATGGAGGGACTTACGGAAAACAACTGAGAAGACTACTT
TCGTTTTTATTGCAGATTCTGATATGAACATTGCACGGGGAATACTTATG
TCAATGTGTAATTGTCAATATGTAAGCATTGTATTATTGGAATAGGAAAG
AGAAAAGAGGTAAATCAAGCCTAGTCTAGTTGTCAGCTGTTACGTGGCTG
TAAAAGAATATGGAGAGCTTATTTATATAAATCACAAAACACAAAGTCTT
TCCCAAGCTGACTGTGTGTTCCATTGGATTGTAGTATTCATGTTGAGAGA
AAGTCAGCCAGTCCAATATCAGACAGGGAAGCCAAAGGTTTTACTATTTA
TCTAGTGCCAAATACAAACATTTCTTTTTCTTTTGTTGTATAAAAGTTTT
TTTCAAACGTAAAAAATTCAGTCAGGACTTAATGATGTCAATACGCCAAG
AAATCTTTTAGGTGAAGAAATCCAAGCACATTTGTTGCAGTGGTATGTAA
AAAACAAGTCATTTGCTTCGATCGATACAATTGATAATGATGTAATGTAA
TAACATTCAATTTGCTTCTATTGATAAATATTTAATTGTTTTATTACCTA
TGGTATATTCAAACAAAAACTTGTAAAAAGCCTTTGTCTGGAAATTTCAA
CTGTTGTAGACTAATGCTCAAAAAGTCAATAAACATAAACATTCTTTTTT
TACTTTTTAGAATGCATTGGAAAGTTAAATGTTATGTAAGTGCAATTATT
ATATAGGTAAATATAATATATAATAAGCTAAATAGATTCAGCTCCATGAA
ACCCAGCTTATCAAAAAGGATGCAGTTAAAAATTAAACATGAAATGTGAC
AAAAACAAAAATTTAATACATTTTGGTCGTAGCTTTTGTTCTGTGTTGAT
ATGTAGAATTGTTTTATTTAGGCAGTGAGACAATTGTTTTGTCCATTATT
CATTTCAGTCTTCGTTCATGTACTAACAACAACAACAATGAAAAAGTTAT
GTTTGGATTAAGAATCAAGGATTCAAAATCAATATTATGGAAAACAACAA
CCAGAGTTCTATGCTTGAAGGTAAATATTTCAATAAGAGAATGTGTTTTT
GTATTTTAAGTATTTTTGTAATTTGTTATTTTGGTAAGAGTTAAACTAGA
ATTAGAAATGGCCAGCTTTGTCCGCCAAGAAAATTCATTAATTAAACTAC
ATATATTGTCATGATACCTTAAGGGAATAAATTTCGCGGGGACAAATCCG
CGAAATTAAATTCTGCGAAACAAGAATATTCCCATGATTTAAAAAATCAC
CTATAGAATTGGTGTTTTGGGGGCAAAATAAGCCATAATTTAAACAAAAA
TTTCTCTCAACCGCGAAATTAAATTCCGCGAAACTTCTGCGAAATTTCTT
TCCTTAAGGTAACTTTTAGTGACTTGTTCTTGTCATGGTTCACATTGAGT
TATTTTACTCATCATACTACTCATCATTATTGTTTTATAAAATTTAGCAA
AAATCAATGTTTTGGAAGGCCCCCCCCAGCGGTTTGCGTGAATGGGCATT
TTCGGTTGCGTGAATGCGTGAAAATTGGGGAAAAAATGCGTGTATGCGTG
AATTGAAAAAACTTGCGTGAACGTGAAAATTCACTTTTTGATTGCGTGAA
TGCGTGAATCTGGGCTATTTTATGTGCGTGAATACGTGAATTTTCCCTTT
TTTCCACCGATCATGTGCAGTTTTCCCGATTTTCCAATGTTTCCTGGAAT
TTTACCGAAAATTTTCCGATTTCCTGAAAAATCGGGTTATTGCGTGAAAC
TCGAGGAAAATTTGCGTGAATGCGTGAATTTCGAAAAAAAATTGCCTGAT
TGCGTGAATTGAGAGTCCGCTGGGGGGGCCTCTTGGAGGCCTGTAGAAAA
TGAATAACAGTAGTTTTAGTAAAGTTTTTCAGATCTAAACGGAAAATAGA
CTTTACACTAGAAATTAGCCGAGGTTTTTCAATATTGTCAAATTTCGAGG
TGGAAATGTTGATTTCGAATCCGGCTAAAAGTGTAGAATTTTGAACATAA
AATTGAAATTTAATTTCCAAATTCGTTCATCTGGTTGGAGGGGAGGAGAA
TAGATTGAGACATTTTTCAATTAAGTTTGGCGTTACATATTTGGCTAACC
CATAATCAGTTTTGGGGAAATTTTAGTTCCCTGCTAGTGATAAACTAACA
TAAACTACACGCTTTTTTTATGAGAATGGACTTTATAAGAATGTCCATGA
TGAAAATGACCAAAAAACTAAGAATATGCTAAAGAATATCACCATCATGG
AATTTTACTATCAAAGCTAAGAATGTTATTTTAAAAGCATTTTCATTTAT
AACTTATCAATTTCCCCAAAGTTAGGCCCAAGTTAGGCTCACTGCTTTTA
CAAAAGTGCCATTTAATGCTTGAGACGTATGTACTATATGTATATGTTAA
ATTTATTATGAATTAGGATCCTAATCTAAGAATATGTTGTAAGAATATTT
TAGTATAGTATGATTTTCCCAAAAACGTTAAGACTATTCATGATGAAATG
GATTTACACCATTCTTATAAAAAAAGCGTGTAGAAATAGGGTTGCCGGCA
ACCAATATCTGTAGGAGGGAGGGAGGTAAAAAGTTTCTGAGACTTGAACA
CCGCCATCTTAAACCTTTTTTGTGCTTTCAGAGTATAGCCAATATCACGC
GGAACCAAATGAGAAATAAGGCTTCTTGCAGGCGGGACGCCCCGGTAGTA
CCACAGGCGGAATAAGTGATTTAGACGATTTAAAATTAAACTACGATTTA
ACTATTGTTAAATAAACATTTAATTTCCAAATTAGTTCATCTGGTTGGAG
GGGAGTAGAATAGATTGAGAAATTTTTCAATTAAGTTTGGCGTCCACATA
TTTGGCTAACTCATAATCTACCGTGAGTATCACAGCGCGAATAAATTAAT
ATTTTCTCTTTGAAAACTTGCCCTCTGATACTCAGGGTACTCATAATCAG
TTTTGGGGAAAATTTAGTCCAAACCGAAGGTACCCCCAAAACAAGGCAAT
GGTTGCAGACTGACCAGACAACATAACAATAAAATAGAGGAAATAACCAA
TNGCGGGGGGAGGGACTATATTTTATGTTTAAGTAATGTTTTGTAATATA
TGTTCGTAGTGTACACGTGTTTTTGTTTCAATAAAGAAAAAAAAAAAAAA
AATTTACTTTGATGACTTTTATAAAATGATCTTCCTTTACTGTTAGGTAA
ATCTTCTTCAGAAAACTGTCAAGTTGGTTCGAACACTGACAATATCTGGC
TTTTGGAGATTGAGAGCAGAAATTTTGGAGGAGGTGCGCTATAAGAATCT
TCTAGAGAGTAGTTTAATGGAAGATTTCCAATTGATTGATCATGATGGTG
AAGTTGTGAAAGATGAAAATGAAGAAGAAGTTATGACGAATACAGATTTG
GTAAAATTCATTTAAACATATTTTTGAAAACTTATATTTATGATATAAAC
AAATTGTGATATAATTAAATAAAGTTAATGCCTGCGTCCATTCATATACT
TTAGTTTGACCAGTTTGACCTTCAGCTCATTTATAATAATCAAGGTTATA
AGTTTTAAGTTTTCAATTCCGTTTTTCCTCAACAAGAGCTATTATAAAAA
CTTTGGTATAACCTAAACTTCTTATATTGATAAGGACTTCATTAAAATAT
GTCAGAACATATGTATTCCATAAATTTCCTTTTATTGTCTTTTTAGCCAG
TTCCTTGCTCGTTGACAACATCTGGAATATTTAAAAAGTAAGTATTTGGC
AAAAGATTATTGACGTATACACATAAAATGATAACATAACATTTAAAAAA
TTTCATCACAGTTTTCTGAACACAGATGAACCAGCAAAGAGATTGTACAG
AAACATGACAGAGCTTTTGTGTTTTTAGTACAGTAAGCAAGTGTTTTATT
GTAACCATGATTATCTCTGAATTTCTGATATCATGCTTTCAGAATTTCAT
TGTATGCATTTTGCTTTCCACTCCAGGGTTGAGATGGTGACATTGGATGA
TAACACCGAATGCTTGATTTGTATGGATAACAAAATTGAAGTTTCATTAC
CTTGTGCTCATAGTTTTTGTACAGCTTGTATAAGCACGTGGTGAGTTCTT
CTCTTTAATTATTACCATTATGAAATCATAAATTGTGTCTTACTTATTTA
TTATGGTGAATTTCTCACTTTTCATTTAATTTTCCATAATCAGTTCTCAC
CAAAATTAAAAGTTTTGTTTCTCGCTAAAACGTCATCAAAAAATTAATTT
CTTCACCTTAATTTCCAAATCCATTTTATTTCCTTCCAGGCACGACACCA
ATAAAAGTTGTCCAGTATGTCGAGATCATTTGGACAAGACTGAAGATTGC
TGGGAATTCACTGATTTGCCAGATTTAGAAGAAATCAACGAAAAAGTAGT
CGAACTGGCTACCGGAGATTGAGAAGGGATGAATACTAAACACTTCTTTT
AATATCGTCATTCGACAGGGAATCCTCAATTCAATTCAAAGATAAGCCTT
CTCCATCCATAACTATTGATACCATGTGGTCGAACATACTACTAATCAAC
CTGGTTTCCTTTTAAATTTTGATGCATCAAAAAAGCAAAGGAGAATGCAA
AAATTTCATTATTTTTGCGTTTAAGTTTGAAACTTAACTGTGAAGGTGCA
GAACTTTCAATACATTTCATCAATGAGGCCGCCAGTAGTTGTTTAAGGAC
AAATTCTATCTATAAAACTTCAACGATGTATGGTGAAAAATCTATCGTCA
TATCAGACAAAACATTTGAAAAAATCGAATTCTGCGTCAAAGAACTTTAA
CTGCAAAAAATCGCCAAAGCTATTTCTTCCAAATTCTGGAAAGAAACGGG
TGTCTTCAACCAAAGTTTCGTCATCACTATCAACAGTCTTTAAATCCGCA
AAGGTTCGACCCCTCAGGAGAAACAACGCAGTGAGAAAGAACACTTGCTT
TATTATCATGGAAACCTCAAACTGCCATGCACGACCTCGATTCTTGGTGC
CAAAGGGATGCCAGAGCGAGTGTATGCATGTATGTGTGTTTTGCTGCGAC
GGAGACTTTTAGCTTCTGATTGGTCTAGATCCTCAATGCGCTGAGGTCGA
CATTAAAAAACAGTTTTACCGTTACCAAACAAGATCGTGTCGGTAGAAGG
CTCAATTTTGAGAACTTTCGAACTCGAAGAAGGCCATCATAACATTATGA
ACAATGTGTGAAATTATCTTTATATAATTTTGTTACTTCTTTTAATTAAG
AACTTAAAAAGAACTTAAAATCAAAAACTTTTAATTTCTGAATATTTAAA
GGCTCAGATTGTTTTCAATTTTTGCCAAATTTTAGTCTCGCGTTCTCATA
AAATATGTGAAGTAATTTTTCTTATTGTATTTTGTAAATATACATCATGT
AAATATGATCAATTAAAGTGATAAATTCACCATAATAAGTAAGTAAGACA
CAATGGGCTCTTCCAGAAAAAAATTTTACATGGGGGGTGGAGGAGGATAT
TTTGTCCAGGCAAAAAATCATCAAAATTTGCCTTGTCTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016225XLOC_016225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028606-exon-sc0000693-1575043694:23809..23853TCONS_00028606-exon-sc0000693-1575043694:23809..23853Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1575043694:23045..23176TCONS_00028606-exon-sc0000693-1575043694:23045..23176Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1575043694:15119..15143TCONS_00028606-exon-sc0000693-1575043694:15119..15143Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1575043694:14784..14895TCONS_00028606-exon-sc0000693-1575043694:14784..14895Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1575043694:12404..12607TCONS_00028606-exon-sc0000693-1575043694:12404..12607Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1575043694:12067..12107TCONS_00028606-exon-sc0000693-1575043694:12067..12107Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1575043694:11714..11827TCONS_00028606-exon-sc0000693-1575043694:11714..11827Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1575043694:10262..11514TCONS_00028606-exon-sc0000693-1575043694:10262..11514Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1510915933:23809..23853TCONS_00028606-exon-sc0000693-1510915933:23809..23853Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1510915933:23045..23176TCONS_00028606-exon-sc0000693-1510915933:23045..23176Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1510915933:15119..15143TCONS_00028606-exon-sc0000693-1510915933:15119..15143Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1510915933:14784..14895TCONS_00028606-exon-sc0000693-1510915933:14784..14895Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1510915933:12404..12607TCONS_00028606-exon-sc0000693-1510915933:12404..12607Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1510915933:12067..12107TCONS_00028606-exon-sc0000693-1510915933:12067..12107Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1510915933:11714..11827TCONS_00028606-exon-sc0000693-1510915933:11714..11827Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1510915933:10262..11514TCONS_00028606-exon-sc0000693-1510915933:10262..11514Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1491911889:23809..23853TCONS_00028606-exon-sc0000693-1491911889:23809..23853Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1491911889:23045..23176TCONS_00028606-exon-sc0000693-1491911889:23045..23176Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1491911889:15119..15143TCONS_00028606-exon-sc0000693-1491911889:15119..15143Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1491911889:14784..14895TCONS_00028606-exon-sc0000693-1491911889:14784..14895Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1491911889:12404..12607TCONS_00028606-exon-sc0000693-1491911889:12404..12607Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1491911889:12067..12107TCONS_00028606-exon-sc0000693-1491911889:12067..12107Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1491911889:11714..11827TCONS_00028606-exon-sc0000693-1491911889:11714..11827Clytia hemisphaericaexon
TCONS_00028606-exon-sc0000693-1491911889:10262..11514TCONS_00028606-exon-sc0000693-1491911889:10262..11514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000693supercontigsc0000693:10262..23853 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.960925	1.18119	0	0	7.81038	4.13668	4.13263	4.50299	13.7436	9.37501	9.35794	12.3377	7.95386	6.13538	5.71922	5.97618	1.601	8.27408	7.10946	5.45556	6.68286	8.99744	1.92596	4.38475	2.97654	3.89946	6.66494	4.25732	3.34929	3.30428
Blast
[Close]
BLAST of TCONS_00028606 vs. Swiss-Prot (Human)
Match: RN141 (RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.717e-20
Identity = 58/224 (25.89%), Postives = 99/224 (44.20%), Query Frame = 3 
Query:  123 KEFELAKDVALINYNMLRECIGKLNVILRSCTNNNNNEKVMFGLRIKDSKSILWKTTTRVLCLKVNLLQKTVKLVRTLTISGFWRLRAEILEEVRYKNLLESSLMEDFQLIDHDGEVVKDENEEEVMTNTDLPVPCSLTTSGIFKKVEMVTLDDNTECLICMDNKIEVSLPCAHSFCTACISTWHDTNKSCPVCRDHLDKTEDCWEFTDLPDLEEINEKVVELA 794
            K   L ++   + Y      + +LN +     +    + ++F ++     S  WK   RV+C K+N     V+  R + +  F +L  +I  +     L +SS  E+            DEN   V          S   S    +V+ +T  D  EC ICMD + ++ LPCAHSFC  CI  W D +++CP+CR  +    + W  +D P  +++   ++ +A
Sbjct:   22 KHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQE-KHLLFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQA-AGVLAQSSTSEE-----------PDENSSSVT---------SCQASLWMGRVKQLT--DEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMA 221
The following BLAST results are available for this feature:
BLAST of TCONS_00028606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1415.717e-2025.89RING finger protein 141 OS=Homo sapiens GN=RNF141 ... [more]
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