TCONS_00028608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028608
Unique NameTCONS_00028608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028608 ID=TCONS_00028608|Name=TCONS_00028608|organism=Clytia hemisphaerica|type=transcript|length=2847bp
GGAATAAAAGAGAGctctaaatgaagacattctattgcaaaataactctt
tttgcacaaatcgaatgttttttgtttacattttggatcTTGAGTTCACG
AACATGAGAGAGAAGTTGTTTGATTGGaatcttgtttttaaagtggtttt
gACTTCAGTTCTTTGCAAAAGAATATACTCAGAGTATCTCTGCatgtttt
tatgttcaaattcagtattactTTTACGGCATTCGATCTATGTAGAGCGG
ctattagtttgttttgttggcataactttttgtaattaaaatgtttgtat
ttttctttggcGGACTAGTACATGGAAAAAAAGGGTAATTGGAAAatcat
tttctgttagacaatttTGAATATGTCTTCGTTACTATTCAGCCTTTAGT
TTTgctcaaaaacatttaaaaaaacagccaaaacaTGCTTAGAAAGTGAC
CCTCAATGGACCCCATCCCTTTATTTACAATTGTCGTACTTTGGCGGCca
tttaatttcaaaactatacttcatcgcagaggtctccgtacggaaaaact
tttatcaaacagacaatgcgcacagagtgaactacgctacgataatcgtg
agatacactctggtacagagtaccttaccacccgcccctgagctcagtta
ctggcgtgatagaccttttttcaaagagggcaccctgttgaataattatg
tagtccagcagaaaaacaatgataaaaccatggataattattacaatatg
catgatacagtaattatgccacggctctatcattgtttttatggctggac
tacataattattcaacaggcaGTTTGTTTACAGGTCTCTTCCCACCACCA
CACAGTTCtaactttgattttttggaTTGCGAGGATGAGATGACATGACA
TATTGTCTAAATCACAAAAAACCATGGCTATTGCTGTCAAAgatgtttta
aaaaatgttcttccAGAATGGTTACAAGATGAGATTATCAAAATCACAGG
AAACTTACAAAAAGATTGGAACAAAGGAATTCTTGTGGCAAGAAAAGAAT
TTGAGCTTGCAAAAGATGTTGCTTTGATCAACTACAATATGCTAAGAgaa
tGCATTGGAAAGTTAAATGTTATTCTTCGTTCATGTactaacaacaacaa
caatgaaaaagttatgtTTGGATTAAGAATCAAGGATTCAAAATCAATAT
TATGGAAAACAACAACCAGAGTTCTATGCTTGAAGGTAAATCTTCTTCAG
AAAACTGTCAAGTTGGTTCGAACACTGACAATATCTGGCTTTTGGAGATT
GAGAGCAGAAATTTTGGAGGAGGTGCGCTATAAGAATCTTCTAGAGAGTA
GTTTAATGGAAGATTTCCAATTGATTGATCATGATGGTGAAGTTgtgaaa
gatgaaaatgaagaagaagttATGACGAATACAGATTTGCCAGTTCCTTG
CTCGTTGACAACATCTGGaatatttaaaaaGGTTGAGATGGTGACATTGG
ATGATAACACCGAATGCTTGATTTGTATGGataacaaaattgaagtttca
TTACCTTGTGCTCATAGTTTTTGTACAGCTTGTATAAGCACGTGGCACGA
CACCAATAAAAGTTGTCCAGTATGTCGAGATCATTTGGACAAGACTGAAG
ATTGCTGGGAATTCACTGATTTGCCAGATTTAGAAGAAATCAACGAAAAA
GTAGTCGAACTGGCTACCGGAGATTGAGAAGGGATGAATACTAAACACTT
CTTTTAATATCGTCATTCGACAGGGAATcctcaattcaattcaaagatAA
GCCTTCTCCATCCATAACTATTGATACCATGTGGTCGAACATACTACTAA
TCAACCTGGtttccttttaaattttgatgcatcaaaaaagcaaaggagaa
tgcaaaaatttcattatttttgcgTTTAAGTTTGAAACTTAACTGTGAAG
GTGCAGAACTTTCAATACATTTCATCAATGAGGCCGCCAGTAGTTGTTTA
AGGACAAATTCTATCTATAAAACTTCAACGATGTATGGTGAAAAATCTAT
CGTCATATCagacaaaacatttgaaaaaatcgAATTCTGCGTCAAAGAAC
TTTAACTGCAAAAAATCGCCAAAGCTATTTCTTCCAAATTCTGGAAAGAA
ACGGGTGTCTTCAACCAAAGTTTCGTCATCACTATCAACAGTCTTTAAAT
CCGCAAAGGTTCGACCCCTCAGGAGAAACAACGCAGTGAGAAAGAACACT
TGCTTTATTATCATGGAAACCTCAAACTGCCATGCACGACCTCGATTCTT
GGTGCCAAAGGGATGCCAGAGCGAGTGTATGCATGTATGTGTGTTTTGCT
GCGACGGAGACTTTTAGCTTCTGATTGGTCTAGATCCTCAATGCGCTGAG
GTCGACATTAAAAAACAGTTTTACCGTTACCAAACAAGATCGTGTCGGTA
GAAGGCTCAATTTTGAGAACTTTCGAACTCGAAGAAGGCCATCATAACAT
TATGAACAATGTGTGAAATTATCTTTATATAATTTTGTTACTTCTTTtaa
ttaagaacttaaaaagaacttaaaatcaaaaacttttaatttctgAATAT
TTAAAGGCTCagattgttttcaatttttgccaaattttagtCTCGCGTTC
TCATAAAATAtgtgaagtaatttttcttatTGTATTTTGTAAATATACAT
CATGTaaatatgatcaattaaagtgATAAATTCACCATAATAAGTAAGTA
AGacacaatgggctcttccagaaaaaaattttacatggggggtggaggag
gatattttgtccaggcaaaaaatcatcaaaatttgccttgtctgggg
Run BLAST on NCBI

transcript from alignment at sc0000693:10262..24142-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028608 ID=TCONS_00028608|Name=TCONS_00028608|organism=Clytia hemisphaerica|type=transcript|length=13881bp|location=Sequence derived from alignment at sc0000693:10262..24142- (Clytia hemisphaerica)
GGAATAAAAGAGAGCTCTAAATGAAGACATTCTATTGCAAAATAACTCTT
TTTGCACAAATCGAATGTTTTTTGTTTACATTTTGGATCTTGAGTTCACG
AACATGAGAGAGAAGTTGTTTGATTGGAATCTTGTTTTTAAAGTGGTTTT
GACTTCAGTTCTTTGCAAAAGAATATACTCAGAGTATCTCTGCATGTTTT
TATGTTCAAATTCAGTATTACTTTTACGGCATTCGATCTATGTAGAGCGG
CTATTAGTTTGTTTTGTTGGCATAACTTTTTGTAATTAAAATGTTTGTAT
TTTTCTTTGGCGGACTAGTACATGGAAAAAAAGGGTAATTGGAAAATCAT
TTTCTGTTAGACAATTTTGAATATGTCTTCGTTACTATTCAGCCTTTAGT
TTTGCTCAAAAACATTTAAAAAAACAGCCAAAACATGCTTAGAAAGTGAC
CCTCAATGGACCCCATCCCTTTATTTACAATTGTCGTACTTTGGCGGCCA
TTTAATTTCAAAACTATACTTCATCGCAGAGGTCTCCGTACGGAAAAACT
TTTATCAAACAGACAATGCGCACAGAGTGAACTACGCTACGATAATCGTG
AGATACACTCTGGTACAGAGTACCTTACCACCCGCCCCTGAGCTCAGTTA
CTGGCGTGATAGACCTTTTTTCAAAGAGGGCACCCTGTTGAATAATTATG
TAGTCCAGCAGAAAAACAATGATAAAACCATGGATAATTATTACAATATG
CATGATACAGTAATTATGCCACGGCTCTATCATTGTTTTTATGGCTGGAC
TACATAATTATTCAACAGGCAGTTTGTTTACAGGTCTCTTCCCACCACCA
CACAGTTCTAACTTTGATTTTTTGGATTGCGAGGATGAGATGACATGACA
TATTGTCTAAATCACAAAAAACCATGGCTATTGCTGTCAAAGATGTTTTA
AAAAATGTTCTTCCAGAATGGTTACAAGATGAGATTATCAAAATCACAGG
AAACTTACAAAAAGATTGGAACAAAGGAATTCTTGTGGCAAGAAAAGAAT
TTGAGCTTGCAAAAGATGTTGCTTTGATCAACTACAATATGCTAAGAGGT
ATATATAATTTTTATGATCTTGCTTTCAGGTTGGCAGACGATATCATCCA
CCAGGATGCAAGTGAAATTTTTCAATCTGCAGATCTAGACGAGGTTTCGG
CTGGGTTTATCATAGACCTTTTTTTAAAGAGGCAGCCATGTTGAATAATT
ATCCAGACGTCCGCGCTCGATAGGATCGATCATCGGAACGGCTCGATGAT
GAATCGATATGTGATCGATGGATTACTTAACGATCCGGATAGGAGATCGA
TAGAGGATCGATACTCAAGATAGACCTTTTTTCAAAGAGGACGTCCTGTT
GAATAATTATATGTAGTCCAGCCATAAAAACAAGGATAGTATGTATGCAT
TTGTATTTTAATAATTATGCATGGTTTTATCATTGTTTTTCTGCTGGACT
ACATAATTATTTAACAGGGTGGCCTCTTTCAAAAAAGGTCTATTTTTTTA
ACTTTTAAGCTTGTGATTAGTTATCGATTATCTATCGATCTATCATCGAT
CTTTTATCGATCTTATCGACCCTATCGACTCATACTCGATTTACGATCGA
TAACAAACCGATTAACGATCGATGACAAATCGATTAACGATCGATGACGA
ATCGGTATACTCGATTAAAAATACTAGCTCGATAATGGATCAACGAAGGA
TCAATACTCAAGACTTTTTAATGGCTGAATCTTCCATCGATCTCCTATCC
GGATCGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCATGCATAA
TTACTATATCAAGCATATTTTAAAAGTTATGCATGGCTGTATCATTGTTT
TTATGCTGGAGTACATAATTATTCAACATGACTGCCTCTTTAAAAAAAGG
TCTATTATAGTTAGGCGGCAATCAGAAATATCTTCGTTTCGCGTCGCCTG
ACCGACTCTCGAAAATTGAGTAGAATTGAGTCCGTGAGTCGGTAAATTTG
TCGGACTTTTTCTGTCAATGACCTTTCCTTAGTTATAAAATTTTATTATT
GCTGATTTTTTGCGAGTGATTTTTAGCGCATTCGCAGCATTTTGACTTTG
TTTATCATTACATGCACCATTTTGGGGTCGAAGGTCACAGTGTTCAAAGC
AGTTGTGCNAAAAATTAAAAATTGAATATCTCGAGAAATACTCATCAAAA
TCACAGTTGTGTTGAAGTTTTTATAAGATGCTCACATAATTGGTTATTCA
AAACAATAGAGATGACGCGTTCTTTAGAAAAACATAATAAAAGTTTTTGT
TTGAATAGTTAACGACCAATCCAATGACAAAAATTCTTGTAAAATGTTCA
ACTTGACCCGTTCAAAGGTCATAATTTTAAACCACCCATTACATGCGGTT
GTTTTGGCTGCTGGCTGGCTGGCAGTTTCCTCCAAGAATGCACTTGAAAA
ATGGATGGAAAAATGGAAACCCGAAAATTTTTACGACCGACCGACTCACT
TTTTAGACCCAACGAGGACGCGAAATGAAGATATTTGTGATTGCCGCCTT
AGTTAGGGTTAGGGTTGGAGCTCGAGAGTCACAATATAAGGCTGAAGGCC
TTCTTAGGGACATTCGTACCCTGAGACTTAACTTTAGATCCCATAGGGAT
CCTTGTAGGTCACTGGTAGGGTTGGGATCCCGGGAGCTTTCTTTGGACTA
AGGTCTGTCAGTCTTAAACTTAAACTCCTACCGTGAGATTGGGTAACTTG
CATCAGTGGAGGCTAACATGCATAGCCCTCAAATGATAGACCTGGCTGGT
CATTAAAATACAAAAATAAATCAAAACAAAAATAGTAGAGTAGAGGCTGC
GAGCAGACAGAGCTGCGTAGTTGTATTTTAATGACCAGTCAGGTCATTCA
TTTGAGAGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCAATATCA
CGGTATATCAGGATTAGAAACTAGGCTAGTCTTACCTCTTTTATCTTTTC
CTTTACAACAATACAATGCTGATACAACACTTGTGTACATGTACATTGAC
AAGTAATCCCTGAGAGAAGTTTTTATAGAAATCTGCAACAAAAACGAAAG
TGTTCTCTTCTACTGATTGCTTCCCAGCGCTCCTTCACAGCTGTTTATCA
AGTTTCCACCAATGAGGTTGCCACATTTCCAGACGGTGTCAATCGAACAA
CTTCGAACAAAAATCGCAATCGAACCAATCGAACGTAATCGAACACGATC
GCATAATTGCGATTCGATTGTCGAACGTAGTAATCGAATCTCAATCGAAC
GGCCAATTCCTGGGTAATATTTGATTGTGTTCGGTTGCGTTCGAGTAAGG
TTAGATTGGTTCGATTAATAGTTGACTATGTTCCATTGGTTCGATTACAA
TTATGTTTGATGAGTTTGATTGCAATTAAATTAAATTGGATCACTCTGTT
AGAGCTTTTTAGGATGGGCGGCCGAGCACTTATTAAGTATTGTACGAAAG
CGAATAAAATCTAAATCAATCGAACGTACTTGAATACAATCGAACGTAAT
CAAAGCAATCACACGGCAAATCCTGGGTAATATTCAATTCGTTCAATTGA
CACCGTCTGGACATTTCAAACGACCCTTCTTTTTGGCACCCGTGGCCTTT
CAGTGCCTTGAACGACGGGCGGCTATAAAATCCCACCCTTCATATATTTG
TTTCAATCCGTGATTCGTGGCTTAGGTTTTTTCTCATCTTCAATTTACTG
AAGAAAGCGGGAATTTGATGCAAGAGTTAGATTGTCAACAAAGTGCCATA
AAAAATCATTCTGAATCATTGAATAAAAGGAGAACTGAAAATCTTAAATA
TTTTCATTTTGAAGAATATGTGCAAAAAGTGAAACATAGAAAAGTTTCAT
TTTTCATTGCATTAATCTAAATGGAGGATTTGGAAAATATTCTATGTTTA
GTTTTTGCACAAACCCCTGTAACTATGGGCGAGCACCCTGTTGCTAAGAT
GTTTGCTTGAAATCGAAAATGAAACCACTCAAAACAAAAGTAAAATCGGC
CCGTACTCATAATCCCATAATCTTGATATAAGAGTTTAAGTCTATACTGT
CTGTAAATTACACGCTATAAAGCGGCCAAAAATTGTTCTGTTCGCGTCGC
AACAGGTGTTAAAAATGCATGCGGGTGGACGGGCGGTCAGAATTTTTTTT
TTTTAAATCGCTTCTTTAAGTCAGGGGCAGGTGGTGATACGAACAGAACA
ATTTTCTGATGGCCGGCAGAGGCCGCCAGAGTGATCAAGTAAAAAGCTAT
ACGTCAAAAGAACAATTTGCTTTTTCCTGATTTCTTCCCGCATCTCCGCA
CCAGAAAATCAGGGGAAAATATGATGCGGGCAGGTAACGCAAATAGAACA
GTTTTTCGATGGCCGCCTAAGTATTTGTGAATGACAGCTAAACTGTCGTG
TCTCGTTGGTGCAAGTGGTTAGGCGTTGGATTTGAAAACCAAGGTTGCTT
GCATTTGGTGGTTAGAGCTGGGGTCAGAGACCTTTGGTCTTTGGGTTTGT
TTCTGATGTTTTTCCTTCAAAGAATATTGATCACTTTCCTTTTCCCCTTG
AGCGGGCAAGAAAAAAAATGATTAGCTCGGTTCTTGCGCAAGCAAATAAA
GATGAGGCAGCAATCTTGCACTGAGGGTGCTACTTAGTTTTGGCCTTATT
TTCGCCCACGATAGAATGGTCCGAATACGGGGATATTCCAAATGATAAAT
GTTGTTCTAAAGTATTATAAGTGTTTATTTTCTGAGAGATACAAATAGTA
TTGAATATTATTAAAACTTATTTATTTAAGTATTTTTAAGTGATTTGCGC
GAAATTGTTTCAAAATGAAAAATGGCACGGTTTTCCAGATTATATTGAAC
TGGCTGTGAGATAATTAAACTTTTTTTGGCCCAAAATTAGTGTATTGGTG
TTGTTGTGTTGGAACAAGCAAAAAAAAATTACAAGTGATTATGGAATGAA
TCACTTGAATGGGAATTTTTTTGGATTTTCCTCAAAATTTGTCCTGCACA
CGACGCGGTTTAGCAATATATGCAGTTTTGAAATGTCCAATGCGCCTTTC
TTGACAGATTTACATACCTTGTTATGCATTTTTGTTTTTGTAAGTATACT
ATTTAGAATTAAATTTAGAAACAAAATTTTCTCTTATAATATCAGTTAGT
GAAGGCCTATGCGCCTTTATTGCAGCAGACCAATTTTTTGTCCCGTACAC
AACAACTACAATTACACTGCTTCAAATATCAATGAGGAAAAAAGCTTTGC
CCAAAATTTGTTTTTTTTTCCTTTTAGGTTATTACCTATATATGTGTCAT
GTTTTTCAGACACTTTCATCTGAAAATAAATTTGCGCTGAGACGCTCATC
ATGCTGAAAAAATCACACTTGTCCCGTACGTCATAGAGTGAAATACTCAA
ATCAATAATATGTACAAGAAATGTTTTGTATTCCTGAAGTCACTCTTATT
TATGTATCAAAAGGCACTAAAAGTTTTACGTATCTTTCTTTTTCGGGATA
TTTCACACTTTGTATGTTGCATACGGGACAAAATTAGGATTCCAATTTGT
CCTGTACGTGACAAAATTTGAAAATCATTAAATTTAACAAGAAAATTCTA
TTTTGACCAAATCTTTTGCATTGATTGGTACATCTAGACCATATTGCTTG
TTTGGATATTCAAGATTTTTCAAGTTTGTTGTATAAATCAAAGTTATTGA
AGGTTAAAGAGTGATTTTCCCCTATTCTTGTAAAGTGTGATAAAACTATT
TTTTTCTTAAAACCTGACCCCTAGAGGATACCAAAGTATCAAATGAAGTT
AAATTTTTGAAGAAAAAAAATGTTGAGATTTTTTTCAGCCTTTTGGAACA
ATTTCATGCAAATCACCCTTTTAAGCGCAAATTTGAATATATGGTTGAAT
AAAAAACAAATGATAAAGCAGTTCTGTTTTTTCCTCAAACCCCCAGAAAT
TTTTTTTTGCCAACTTAGCTACTTTACAAATCTCAGAAAAGAACTCCCAT
GGGAATTCCGATACATAACCAGATTGGCTAATTTCGGAACGACTTCAAGA
AAGTCATAGTGGCAGATAATTTTAAAACTTTCTGAGAAAATGTGTGGAAT
TCATCAATGTTGATGGCTTGTTGATTCTTTAAAGAAAAAATACAACAGGT
ATAGATTCAGCCATTCTAATTAGCATCAGCGTTCGGCTATTGCCAACGTA
AAAATGCCAACACAAATATCAACGTAAATTTGGCTTTTGTCGACGTAAAA
GTGCTTACTGTACTATAGAACCCAGAATTTTTTGCCAAGGCACACTAATC
TGAATTAGAAAGGCTGAGCTTTTTCTAATCCTGGAATATCAAGGTTCCAG
CTGCACTGATACAGCACTGGAAAGATGAGAAAGGTTGTCCTTTTATTTGT
TCATAAAAATATGCCCTGTAAATATATGTTTAAATGATATCCTTAACTGT
CAGCTTGGGAAAAACTGTGTATTTCCATTTTAAGAAATGACGCACAAANT
GCCCTCGGTCAACGCAACAACCTCGCAAGCTCGGTCGTTACTTGACCTCG
GGCAATATTTCTCAGTACAGCCCTCACTAACCGGTCATTATTGTATTATT
GTTGAAGGTTACTTCAGATTGATTTTCCTCAATATTGAGACCACCAATCA
CTTTGAGACCAGTGTTGCTGCAAGGGTTCTATAACTGCCACTGCGTTCGA
TTCAGCTCACCTCAGGCCAGTGTAACCTGAAAGGAGAGGTTCATCAGGGA
CATTACACATGAAATTATCAAGTTTACGTTTAAAGGCATCCTTAGTGCAG
TTAGTAAGGTTTCTTATTGCTTTCGGCATGCAATTAAGCAGCTTGGGACC
CTGCATGCGAATGGAATCATACATTTGACTTTGGTAGCTACTTTGCTTAA
TCAATGGGATATTGCAGTTTCTCCTCTGTCTAGGATTTATGTACCACGAA
ATTTCTCTGTCTCCACCTCCAACTCCGCCAATATTTTGTGTTACTCCTTC
AAGGATGCCCCATGTATAGATGATGATGTACCTTTCTCTGCGCCTTTGTA
GTGAGTACAACTTTAGGGGTCCCCAGTCTTTCCCAGTAGTCTATAATTAT
TCTTGAGACCATTGATGCTATTGATTTGTCTTGTGAAAGACTTTTGAATT
TGTTCGATTGATTGGATACTTTAATCCCTTTTTCGAGTGGATTCCATAGT
TGGGAGCAATAATCGAGATGGTGGATGACAAGTGATTTCGACAGTGTAAG
CATTATACATCTTGATCCCTGGATTTGCAGATTCGTATGATCAATCCCAC
AAGCTGAGTTGCTCTTTTGATCACTCCATTGATATGAACTTTCTAGCTCC
AATGGAGGGACTTACGGAAAACAACTGAGAAGACTACTTTCGTTTTTATT
GCAGATTCTGATATGAACATTGCACGGGGAATACTTATGTCAATGTGTAA
TTGTCAATATGTAAGCATTGTATTATTGGAATAGGAAAGAGAAAAGAGGT
AAATCAAGCCTAGTCTAGTTGTCAGCTGTTACGTGGCTGTAAAAGAATAT
GGAGAGCTTATTTATATAAATCACAAAACACAAAGTCTTTCCCAAGCTGA
CTGTGTGTTCCATTGGATTGTAGTATTCATGTTGAGAGAAAGTCAGCCAG
TCCAATATCAGACAGGGAAGCCAAAGGTTTTACTATTTATCTAGTGCCAA
ATACAAACATTTCTTTTTCTTTTGTTGTATAAAAGTTTTTTTCAAACGTA
AAAAATTCAGTCAGGACTTAATGATGTCAATACGCCAAGAAATCTTTTAG
GTGAAGAAATCCAAGCACATTTGTTGCAGTGGTATGTAAAAAACAAGTCA
TTTGCTTCGATCGATACAATTGATAATGATGTAATGTAATAACATTCAAT
TTGCTTCTATTGATAAATATTTAATTGTTTTATTACCTATGGTATATTCA
AACAAAAACTTGTAAAAAGCCTTTGTCTGGAAATTTCAACTGTTGTAGAC
TAATGCTCAAAAAGTCAATAAACATAAACATTCTTTTTTTACTTTTTAGA
ATGCATTGGAAAGTTAAATGTTATGTAAGTGCAATTATTATATAGGTAAA
TATAATATATAATAAGCTAAATAGATTCAGCTCCATGAAACCCAGCTTAT
CAAAAAGGATGCAGTTAAAAATTAAACATGAAATGTGACAAAAACAAAAA
TTTAATACATTTTGGTCGTAGCTTTTGTTCTGTGTTGATATGTAGAATTG
TTTTATTTAGGCAGTGAGACAATTGTTTTGTCCATTATTCATTTCAGTCT
TCGTTCATGTACTAACAACAACAACAATGAAAAAGTTATGTTTGGATTAA
GAATCAAGGATTCAAAATCAATATTATGGAAAACAACAACCAGAGTTCTA
TGCTTGAAGGTAAATATTTCAATAAGAGAATGTGTTTTTGTATTTTAAGT
ATTTTTGTAATTTGTTATTTTGGTAAGAGTTAAACTAGAATTAGAAATGG
CCAGCTTTGTCCGCCAAGAAAATTCATTAATTAAACTACATATATTGTCA
TGATACCTTAAGGGAATAAATTTCGCGGGGACAAATCCGCGAAATTAAAT
TCTGCGAAACAAGAATATTCCCATGATTTAAAAAATCACCTATAGAATTG
GTGTTTTGGGGGCAAAATAAGCCATAATTTAAACAAAAATTTCTCTCAAC
CGCGAAATTAAATTCCGCGAAACTTCTGCGAAATTTCTTTCCTTAAGGTA
ACTTTTAGTGACTTGTTCTTGTCATGGTTCACATTGAGTTATTTTACTCA
TCATACTACTCATCATTATTGTTTTATAAAATTTAGCAAAAATCAATGTT
TTGGAAGGCCCCCCCCAGCGGTTTGCGTGAATGGGCATTTTCGGTTGCGT
GAATGCGTGAAAATTGGGGAAAAAATGCGTGTATGCGTGAATTGAAAAAA
CTTGCGTGAACGTGAAAATTCACTTTTTGATTGCGTGAATGCGTGAATCT
GGGCTATTTTATGTGCGTGAATACGTGAATTTTCCCTTTTTTCCACCGAT
CATGTGCAGTTTTCCCGATTTTCCAATGTTTCCTGGAATTTTACCGAAAA
TTTTCCGATTTCCTGAAAAATCGGGTTATTGCGTGAAACTCGAGGAAAAT
TTGCGTGAATGCGTGAATTTCGAAAAAAAATTGCCTGATTGCGTGAATTG
AGAGTCCGCTGGGGGGGCCTCTTGGAGGCCTGTAGAAAATGAATAACAGT
AGTTTTAGTAAAGTTTTTCAGATCTAAACGGAAAATAGACTTTACACTAG
AAATTAGCCGAGGTTTTTCAATATTGTCAAATTTCGAGGTGGAAATGTTG
ATTTCGAATCCGGCTAAAAGTGTAGAATTTTGAACATAAAATTGAAATTT
AATTTCCAAATTCGTTCATCTGGTTGGAGGGGAGGAGAATAGATTGAGAC
ATTTTTCAATTAAGTTTGGCGTTACATATTTGGCTAACCCATAATCAGTT
TTGGGGAAATTTTAGTTCCCTGCTAGTGATAAACTAACATAAACTACACG
CTTTTTTTATGAGAATGGACTTTATAAGAATGTCCATGATGAAAATGACC
AAAAAACTAAGAATATGCTAAAGAATATCACCATCATGGAATTTTACTAT
CAAAGCTAAGAATGTTATTTTAAAAGCATTTTCATTTATAACTTATCAAT
TTCCCCAAAGTTAGGCCCAAGTTAGGCTCACTGCTTTTACAAAAGTGCCA
TTTAATGCTTGAGACGTATGTACTATATGTATATGTTAAATTTATTATGA
ATTAGGATCCTAATCTAAGAATATGTTGTAAGAATATTTTAGTATAGTAT
GATTTTCCCAAAAACGTTAAGACTATTCATGATGAAATGGATTTACACCA
TTCTTATAAAAAAAGCGTGTAGAAATAGGGTTGCCGGCAACCAATATCTG
TAGGAGGGAGGGAGGTAAAAAGTTTCTGAGACTTGAACACCGCCATCTTA
AACCTTTTTTGTGCTTTCAGAGTATAGCCAATATCACGCGGAACCAAATG
AGAAATAAGGCTTCTTGCAGGCGGGACGCCCCGGTAGTACCACAGGCGGA
ATAAGTGATTTAGACGATTTAAAATTAAACTACGATTTAACTATTGTTAA
ATAAACATTTAATTTCCAAATTAGTTCATCTGGTTGGAGGGGAGTAGAAT
AGATTGAGAAATTTTTCAATTAAGTTTGGCGTCCACATATTTGGCTAACT
CATAATCTACCGTGAGTATCACAGCGCGAATAAATTAATATTTTCTCTTT
GAAAACTTGCCCTCTGATACTCAGGGTACTCATAATCAGTTTTGGGGAAA
ATTTAGTCCAAACCGAAGGTACCCCCAAAACAAGGCAATGGTTGCAGACT
GACCAGACAACATAACAATAAAATAGAGGAAATAACCAATNGCGGGGGGA
GGGACTATATTTTATGTTTAAGTAATGTTTTGTAATATATGTTCGTAGTG
TACACGTGTTTTTGTTTCAATAAAGAAAAAAAAAAAAAAAATTTACTTTG
ATGACTTTTATAAAATGATCTTCCTTTACTGTTAGGTAAATCTTCTTCAG
AAAACTGTCAAGTTGGTTCGAACACTGACAATATCTGGCTTTTGGAGATT
GAGAGCAGAAATTTTGGAGGAGGTGCGCTATAAGAATCTTCTAGAGAGTA
GTTTAATGGAAGATTTCCAATTGATTGATCATGATGGTGAAGTTGTGAAA
GATGAAAATGAAGAAGAAGTTATGACGAATACAGATTTGGTAAAATTCAT
TTAAACATATTTTTGAAAACTTATATTTATGATATAAACAAATTGTGATA
TAATTAAATAAAGTTAATGCCTGCGTCCATTCATATACTTTAGTTTGACC
AGTTTGACCTTCAGCTCATTTATAATAATCAAGGTTATAAGTTTTAAGTT
TTCAATTCCGTTTTTCCTCAACAAGAGCTATTATAAAAACTTTGGTATAA
CCTAAACTTCTTATATTGATAAGGACTTCATTAAAATATGTCAGAACATA
TGTATTCCATAAATTTCCTTTTATTGTCTTTTTAGCCAGTTCCTTGCTCG
TTGACAACATCTGGAATATTTAAAAAGTAAGTATTTGGCAAAAGATTATT
GACGTATACACATAAAATGATAACATAACATTTAAAAAATTTCATCACAG
TTTTCTGAACACAGATGAACCAGCAAAGAGATTGTACAGAAACATGACAG
AGCTTTTGTGTTTTTAGTACAGTAAGCAAGTGTTTTATTGTAACCATGAT
TATCTCTGAATTTCTGATATCATGCTTTCAGAATTTCATTGTATGCATTT
TGCTTTCCACTCCAGGGTTGAGATGGTGACATTGGATGATAACACCGAAT
GCTTGATTTGTATGGATAACAAAATTGAAGTTTCATTACCTTGTGCTCAT
AGTTTTTGTACAGCTTGTATAAGCACGTGGTGAGTTCTTCTCTTTAATTA
TTACCATTATGAAATCATAAATTGTGTCTTACTTATTTATTATGGTGAAT
TTCTCACTTTTCATTTAATTTTCCATAATCAGTTCTCACCAAAATTAAAA
GTTTTGTTTCTCGCTAAAACGTCATCAAAAAATTAATTTCTTCACCTTAA
TTTCCAAATCCATTTTATTTCCTTCCAGGCACGACACCAATAAAAGTTGT
CCAGTATGTCGAGATCATTTGGACAAGACTGAAGATTGCTGGGAATTCAC
TGATTTGCCAGATTTAGAAGAAATCAACGAAAAAGTAGTCGAACTGGCTA
CCGGAGATTGAGAAGGGATGAATACTAAACACTTCTTTTAATATCGTCAT
TCGACAGGGAATCCTCAATTCAATTCAAAGATAAGCCTTCTCCATCCATA
ACTATTGATACCATGTGGTCGAACATACTACTAATCAACCTGGTTTCCTT
TTAAATTTTGATGCATCAAAAAAGCAAAGGAGAATGCAAAAATTTCATTA
TTTTTGCGTTTAAGTTTGAAACTTAACTGTGAAGGTGCAGAACTTTCAAT
ACATTTCATCAATGAGGCCGCCAGTAGTTGTTTAAGGACAAATTCTATCT
ATAAAACTTCAACGATGTATGGTGAAAAATCTATCGTCATATCAGACAAA
ACATTTGAAAAAATCGAATTCTGCGTCAAAGAACTTTAACTGCAAAAAAT
CGCCAAAGCTATTTCTTCCAAATTCTGGAAAGAAACGGGTGTCTTCAACC
AAAGTTTCGTCATCACTATCAACAGTCTTTAAATCCGCAAAGGTTCGACC
CCTCAGGAGAAACAACGCAGTGAGAAAGAACACTTGCTTTATTATCATGG
AAACCTCAAACTGCCATGCACGACCTCGATTCTTGGTGCCAAAGGGATGC
CAGAGCGAGTGTATGCATGTATGTGTGTTTTGCTGCGACGGAGACTTTTA
GCTTCTGATTGGTCTAGATCCTCAATGCGCTGAGGTCGACATTAAAAAAC
AGTTTTACCGTTACCAAACAAGATCGTGTCGGTAGAAGGCTCAATTTTGA
GAACTTTCGAACTCGAAGAAGGCCATCATAACATTATGAACAATGTGTGA
AATTATCTTTATATAATTTTGTTACTTCTTTTAATTAAGAACTTAAAAAG
AACTTAAAATCAAAAACTTTTAATTTCTGAATATTTAAAGGCTCAGATTG
TTTTCAATTTTTGCCAAATTTTAGTCTCGCGTTCTCATAAAATATGTGAA
GTAATTTTTCTTATTGTATTTTGTAAATATACATCATGTAAATATGATCA
ATTAAAGTGATAAATTCACCATAATAAGTAAGTAAGACACAATGGGCTCT
TCCAGAAAAAAATTTTACATGGGGGGTGGAGGAGGATATTTTGTCCAGGC
AAAAAATCATCAAAATTTGCCTTGTCTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016225XLOC_016225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028608-exon-sc0000693-1575043694:23045..24142TCONS_00028608-exon-sc0000693-1575043694:23045..24142Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1575043694:15119..15143TCONS_00028608-exon-sc0000693-1575043694:15119..15143Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1575043694:14784..14895TCONS_00028608-exon-sc0000693-1575043694:14784..14895Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1575043694:12404..12607TCONS_00028608-exon-sc0000693-1575043694:12404..12607Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1575043694:12067..12107TCONS_00028608-exon-sc0000693-1575043694:12067..12107Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1575043694:11714..11827TCONS_00028608-exon-sc0000693-1575043694:11714..11827Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1575043694:10262..11514TCONS_00028608-exon-sc0000693-1575043694:10262..11514Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1510915933:23045..24142TCONS_00028608-exon-sc0000693-1510915933:23045..24142Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1510915933:15119..15143TCONS_00028608-exon-sc0000693-1510915933:15119..15143Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1510915933:14784..14895TCONS_00028608-exon-sc0000693-1510915933:14784..14895Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1510915933:12404..12607TCONS_00028608-exon-sc0000693-1510915933:12404..12607Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1510915933:12067..12107TCONS_00028608-exon-sc0000693-1510915933:12067..12107Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1510915933:11714..11827TCONS_00028608-exon-sc0000693-1510915933:11714..11827Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1510915933:10262..11514TCONS_00028608-exon-sc0000693-1510915933:10262..11514Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1491911889:23045..24142TCONS_00028608-exon-sc0000693-1491911889:23045..24142Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1491911889:15119..15143TCONS_00028608-exon-sc0000693-1491911889:15119..15143Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1491911889:14784..14895TCONS_00028608-exon-sc0000693-1491911889:14784..14895Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1491911889:12404..12607TCONS_00028608-exon-sc0000693-1491911889:12404..12607Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1491911889:12067..12107TCONS_00028608-exon-sc0000693-1491911889:12067..12107Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1491911889:11714..11827TCONS_00028608-exon-sc0000693-1491911889:11714..11827Clytia hemisphaericaexon
TCONS_00028608-exon-sc0000693-1491911889:10262..11514TCONS_00028608-exon-sc0000693-1491911889:10262..11514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000693supercontigsc0000693:10262..24142 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69844	2.11944	2.02001	2.52319	3.92917	2.26033	3.61658	3.18152	2.55785	2.14216	2.27189	2.73945	2.84236	3.62425	1.44677	1.49509	1.50255	1.60059	2.28875	2.96779	3.01553	3.962	1.15444	1.53298	2.95862	3.89449	2.71921	3.09435	2.53274	2.16731
Blast
[Close]
BLAST of TCONS_00028608 vs. Swiss-Prot (Human)
Match: RN141 (RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.285e-19
Identity = 58/224 (25.89%), Postives = 99/224 (44.20%), Query Frame = 3 
Query: 1044 KEFELAKDVALINYNMLRECIGKLNVILRSCTNNNNNEKVMFGLRIKDSKSILWKTTTRVLCLKVNLLQKTVKLVRTLTISGFWRLRAEILEEVRYKNLLESSLMEDFQLIDHDGEVVKDENEEEVMTNTDLPVPCSLTTSGIFKKVEMVTLDDNTECLICMDNKIEVSLPCAHSFCTACISTWHDTNKSCPVCRDHLDKTEDCWEFTDLPDLEEINEKVVELA 1715
            K   L ++   + Y      + +LN +     +    + ++F ++     S  WK   RV+C K+N     V+  R + +  F +L  +I  +     L +SS  E+            DEN   V          S   S    +V+ +T  D  EC ICMD + ++ LPCAHSFC  CI  W D +++CP+CR  +    + W  +D P  +++   ++ +A
Sbjct:   22 KHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQE-KHLLFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQA-AGVLAQSSTSEE-----------PDENSSSVT---------SCQASLWMGRVKQLT--DEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMA 221
The following BLAST results are available for this feature:
BLAST of TCONS_00028608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1411.285e-1925.89RING finger protein 141 OS=Homo sapiens GN=RNF141 ... [more]
back to top