|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028636 ID=TCONS_00028636|Name=TCONS_00028636|organism=Clytia hemisphaerica|type=transcript|length=1001bp
cgtgaattgtaCTTTTTcagcgcgtgaatacgtgaaatGAGATAtctgcg
tgaacgtgaaaataagattttttctgcgtgaatacgtgaattcgACCTTT
TATACGTGACGCGTGAAACTGAAAAACTCTTTTGAATGCTTTCAAAGCCC
CTATTCCCGCCCGTAttcattttgtaataaaaggTCTCCCTCTTACTTGT
TTTATAATAATCGATTACTATATGCCCTACATAATGTGTAAAATTATTGT
TTAAAGCGACATTGAGGAGAGCACGATTCGGAGAAATGAGACAGAGATGT
TTTGTTTTATAAAGACACAATAAAGAAATTGTGTGCGTTGCCATGGTTTC
TtccattttttctcatttttgtttgaaaaaaaatttttttgaagtgaaAG
AGAGAGAGGTGATGtgtgtatattttgtgtttGTCTGAAATCCTGAAATA
TATTTGGTTTGTGTGTTGTGGAACGGGAACAGTTCTGAAAATTGAACCTG
ACACAACAAAAGACATGGCAGGATCAGAAACTGGTGGAGAGCAGGAAGAA
GTTCAAGTGGAAGTTGTGGTGTTCTTTTATCAACTTGGAAAGACAAAAGC
TGATTATGCACATAAAGAAACAGCTCATATCATGATTCCAAAGAATATAA
AATCATTGGCGGCATTGAAAAGAACCCTCACGGAACAAGCTGGTGTGAGA
GATATAGCAAAGACATTACAATGGTCAGATTGCGAAGTGCTTCTTTCAAG
AGGAGTAAAAGGCCCATCTGGAACCGTTACCTTTGCCATTCGCACGGATA
GTCAACTAAAGATTGAGCTACCAAGTGTCATGTTTGGGAACGACAGGTTA
CATGCAACGGTGTATCCTATCGAAGCTAGATTCCGATCGAAGGCTCCAGT
CATTTCAATCGAAGTTTTGCCATCATCTTCAAATGCGGTTGAAACCTCTG
AAATCCGAATTAATGCAGGCGAACTCGAAGATAAAGAATATTTGATAACA
G Run BLAST on NCBI protein sequence of TCONS_00028636-protein >TCONS_00028636-protein ID=TCONS_00028636-protein|Name=TCONS_00028636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MAGSETGGEQEEVQVEVVVFFYQLGKTKADYAHKETAHIMIPKNIKSLAA
LKRTLTEQAGVRDIAKTLQWSDCEVLLSRGVKGPSGTVTFAIRTDSQLKI
ELPSVMFGNDRLHATVYPIEARFRSKAPVISIEVLPSSSNAVETSEIRIN
AGELEDKEYLIT Run BLAST on NCBI transcript from alignment at sc0000694:192..2227- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028636 ID=TCONS_00028636|Name=TCONS_00028636|organism=Clytia hemisphaerica|type=transcript|length=2036bp|location=Sequence derived from alignment at sc0000694:192..2227- (Clytia hemisphaerica)
CGTGAATTGTACTTTTTCAGCGCGTGAATACGTGAAATGAGATATCTGCG
TGAACGTGAAAATAAGATTTTTTCTGCGTGAATACGTGAATTCGACCTTT
TATACGTGACGCGTGAAACTGAAAAACTCTTTTGAATGCTTTCAAAGCCC
CTATTCCCGCCCGTATTCATTTTGTAATAAAAGGTCTCCCTCTTACTTGT
TTTATAATAATCGATTACTATATGCCCTACATAATGTGTAAAATTATTGT
TTAAAGCGACATTGAGGAGAGCACGATTCGGAGAAATGAGACAGAGATGT
TTTGTTTTATAAAGACACAATAAAGAAATTGTGTGCGTTGCCATGGTTTC
TTCCATTTTTTCTCATTTTTGTTTGAAAAAAAATTTTTTTGAAGTGAAAG
AGAGAGAGGTGATGTGTGTATATTTTGTGTTTGTCTGAAATCCTGAAATA
TATTTGGTTTGTGTGTTGTGGAACGGGAACAGTTCTGAAAATTGAACCTG
ACACAACAAAAGACATGGCAGGATCAGAAACTGGTGGAGAGCAGGAAGAA
GTTCAAGTGGAAGTTGTGGTGTTCTTTTATCAACTTGGAAAGACAAAAGC
TGATTATGCACATAAAGAAACAGCTCATATCATGATTCCAAAGAATATAA
AATCATTGGCGGCATTGAAAAGAACCCTCACGTAAGCAACAATATTTTTA
ATTTCTAACGCATAGGGTTCGATAAATAGACTAAGCTGCCCTGGGCAAAA
TTGGGTACGGGAAATAAGAAAATTTTTTAATTTTTGTCTTCTTCTATTCA
TTTTTGCCACTTTTCAGGACGAACTTTCTGAAAGCTTTCCAACGGCGGTT
ACAGAAGGTACTGAAAATTAATGACGGAGAGTGTTTCTTTTGTTATTATT
CCTGTTATGGGAGTAATTGCTCTCCACTAAAAACACTGAGTTCCTTCTGT
AACCGCCGTTGCCTTCAGCAGCATGTTTTCTAAAGTTTTTCTCGGTAATA
TCTTGTCCAAGGTCGGCGGAACAACCGTATTTTTGTGAGTTTTTTTCGAT
TTCAAAGTTTTACTTTTTAAAGAATTTGTCGCCGCGAATTACCCTGTTAA
AAAATTTTAAAGAACCTTTTTAGCGTAAGCCGAAATTAGGCAGTGGCGAC
ATTCAAAAATCTTCAGAAAAAGATAATGTTATGTTTCATTATATTCAAGG
GAACAAGCTGGTGTGAGAGATATAGCAAAGACATTACAATGGTCAGATTG
CGAAGTGCTTCTTTCAAGAGGAGTAAAAGGCCCATCTGGAACCGTTACCT
TTGCCATTCGCACGGATAGTCAACTAAAGATTGAGCTACCAAGTGTCATG
TTTGGGAACGACAGGTTACATGGTATGTCTAATTTAAACTTAACCTTTTT
TAAATCCAAAAACCTTCGCTGCACTAGCTCACCACGCGAGTTTTTGATCA
GTTTGTTGAGAACGGTGCAAGCAATACTGCACTTTTACCGGATTGGGATA
CATAAAATTCGATTTCTATTTTTACTATCCCGTATAAAAAAACTGCGTAA
GTATTTTTAACCTACTGGCTGTGCAAAAATTTAAGGAAAAATTCTTGCCT
AAAGTTTCTCTCGGCAAATTTTGAAATCCTTTGGTCAAAAGTTTCTAAAT
TTGTTATTCTTTTTAAGGTTTCTTTTTCCCTTTTCCCACAATTTCCCCCT
TTTTTCATTTGAAAAACGTGGATACGCTTTTTGATATGAAACGATCAATT
TTTCCCCAATCAGGATAGGTATCCCGATCTTGCCACATTGGCAGAAGAGG
CCAATGGGAGAAGTTTTATACACGCTGAATAGAATCGCTTTTTGTCCTCA
CAGGTTTTTTAACTTAAAGTTAAAATTATTTCATTCTAGCAACGGTGTAT
CCTATCGAAGCTAGATTCCGATCGAAGGCTCCAGTCATTTCAATCGAAGT
TTTGCCATCATCTTCAAATGCGGTTGAAACCTCTGAAATCCGAATTAATG
CAGGCGAACTCGAAGATAAAGAATATTTGATAACAG Coding sequence (CDS) from alignment at sc0000694:192..2227- >TCONS_00028636 ID=TCONS_00028636|Name=TCONS_00028636|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000694:192..2227- (Clytia hemisphaerica)
CAACGGTGTATCCTATCGAAGCTAGATTCCGATCGAAGGCTCCAGTCATT
TCAATCGAAGTTTTGCCATCATCTTCAAATGCGGTTGAAACCTCTGAAAT
CCGAATTAATGCAGGCGAACTCGAAGATAAAGAATATTTGATAACAGGAA
CAAGCTGGTGTGAGAGATATAGCAAAGACATTACAATGGTCAGATTGCGA
AGTGCTTCTTTCAAGAGGAGTAAAAGGCCCATCTGGAACCGTTACCTTTG
CCATTCGCACGGATAGTCAACTAAAGATTGAGCTACCAAGTGTCATGTTT
GGGAACGACAGGTTACATGATGGCAGGATCAGAAACTGGTGGAGAGCAGG
AAGAAGTTCAAGTGGAAGTTGTGGTGTTCTTTTATCAACTTGGAAAGACA
AAAGCTGATTATGCACATAAAGAAACAGCTCATATCATGATTCCAAAGAA
TATAAAATCATTGGCGGCATTGAAAAGAACCCTCACCAACGGTGTATCCT
ATCGAAGCTAGATTCCGATCGAAGGCTCCAGTCATTTCAATCGAAGTTTT
GCCATCATCTTCAAATGCGGTTGAAACCTCTGAAATCCGAATTAATGCAG
GCGAACTCGAAGATAAAGAATATTTGATAACAGGAACAAGCTGGTGTGAG
AGATATAGCAAAGACATTACAATGGTCAGATTGCGAAGTGCTTCTTTCAA
GAGGAGTAAAAGGCCCATCTGGAACCGTTACCTTTGCCATTCGCACGGAT
AGTCAACTAAAGATTGAGCTACCAAGTGTCATGTTTGGGAACGACAGGTT
ACATGATGGCAGGATCAGAAACTGGTGGAGAGCAGGAAGAAGTTCAAGTG
GAAGTTGTGGTGTTCTTTTATCAACTTGGAAAGACAAAAGCTGATTATGC
ACATAAAGAAACAGCTCATATCATGATTCCAAAGAATATAAAATCATTGG
CGGCATTGAAAAGAACCCTCACCAACGGTGTATCCTATCGAAGCTAGATT
CCGATCGAAGGCTCCAGTCATTTCAATCGAAGTTTTGCCATCATCTTCAA
ATGCGGTTGAAACCTCTGAAATCCGAATTAATGCAGGCGAACTCGAAGAT
AAAGAATATTTGATAACAGGAACAAGCTGGTGTGAGAGATATAGCAAAGA
CATTACAATGGTCAGATTGCGAAGTGCTTCTTTCAAGAGGAGTAAAAGGC
CCATCTGGAACCGTTACCTTTGCCATTCGCACGGATAGTCAACTAAAGAT
TGAGCTACCAAGTGTCATGTTTGGGAACGACAGGTTACATGATGGCAGGA
TCAGAAACTGGTGGAGAGCAGGAAGAAGTTCAAGTGGAAGTTGTGGTGTT
CTTTTATCAACTTGGAAAGACAAAAGCTGATTATGCACATAAAGAAACAG
CTCATATCATGATTCCAAAGAATATAAAATCATTGGCGGCATTGAAAAGA
ACCCTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028636-exon-sc0000694-1575043694:1547..2227 | TCONS_00028636-exon-sc0000694-1575043694:1547..2227 | Clytia hemisphaerica | exon |
| TCONS_00028636-exon-sc0000694-1575043694:856..1028 | TCONS_00028636-exon-sc0000694-1575043694:856..1028 | Clytia hemisphaerica | exon |
| TCONS_00028636-exon-sc0000694-1575043694:192..338 | TCONS_00028636-exon-sc0000694-1575043694:192..338 | Clytia hemisphaerica | exon |
| TCONS_00028636-exon-sc0000694-1510915933:1547..2227 | TCONS_00028636-exon-sc0000694-1510915933:1547..2227 | Clytia hemisphaerica | exon |
| TCONS_00028636-exon-sc0000694-1510915933:856..1028 | TCONS_00028636-exon-sc0000694-1510915933:856..1028 | Clytia hemisphaerica | exon |
| TCONS_00028636-exon-sc0000694-1510915933:192..338 | TCONS_00028636-exon-sc0000694-1510915933:192..338 | Clytia hemisphaerica | exon |
| TCONS_00028636-exon-sc0000694-1491911889:1547..2227 | TCONS_00028636-exon-sc0000694-1491911889:1547..2227 | Clytia hemisphaerica | exon |
| TCONS_00028636-exon-sc0000694-1491911889:856..1028 | TCONS_00028636-exon-sc0000694-1491911889:856..1028 | Clytia hemisphaerica | exon |
| TCONS_00028636-exon-sc0000694-1491911889:192..338 | TCONS_00028636-exon-sc0000694-1491911889:192..338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000694 | supercontig | sc0000694:192..2227 - |
Blast
The following BLAST results are available for this feature:
|
