TCONS_00028641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028641
Unique NameTCONS_00028641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028641 ID=TCONS_00028641|Name=TCONS_00028641|organism=Clytia hemisphaerica|type=transcript|length=388bp
AAATTACAATCAACAGAACAGACACTGACAGTAAGACGCTCATTGACTTC
CCCTCACCAACACTGGACATTACCAGGAGCGGGAAACCCTGTGATTTTAA
GTGGAGCTTCGTCAAGACCTCGAGAGTCAAACTTTGAGACCAAATTGGAC
GAACTAAAagactggatgaaaattgagtTCAATAGAATCCATACCAGAAT
TGACAAAATAAATGACATTAAATTGAATGACATTGGGCAAATTGACAATT
TTGTCAACAACAACAGCCTTAAAGATTGGATAACATCACCGCAAGAACGA
GAGAGAGAAGTTGAAGTCATTGAAGTCACGGCCACAGAAGTCCAACCAAA
CGCAACTGCCGAACAACCATTAACAAATTCAAACCAAC
Run BLAST on NCBI

protein sequence of TCONS_00028641-protein

>TCONS_00028641-protein ID=TCONS_00028641-protein|Name=TCONS_00028641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
KLQSTEQTLTVRRSLTSPHQHWTLPGAGNPVILSGASSRPRESNFETKLD
ELKDWMKIEFNRIHTRIDKINDIKLNDIGQIDNFVNNNSLKDWITSPQER
EREVEVIEVTATEVQPNATAEQPLTNSNQ
Run BLAST on NCBI

transcript from alignment at sc0000694:89333..89720

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028641 ID=TCONS_00028641|Name=TCONS_00028641|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at sc0000694:89333..89720 (Clytia hemisphaerica)
GTTGGTTTGAATTTGTTAATGGTTGTTCGGCAGTTGCGTTTGGTTGGACT
TCTGTGGCCGTGACTTCAATGACTTCAACTTCTCTCTCTCGTTCTTGCGG
TGATGTTATCCAATCTTTAAGGCTGTTGTTGTTGACAAAATTGTCAATTT
GCCCAATGTCATTCAATTTAATGTCATTTATTTTGTCAATTCTGGTATGG
ATTCTATTGAactcaattttcatccagtctTTTAGTTCGTCCAATTTGGT
CTCAAAGTTTGACTCTCGAGGTCTTGACGAAGCTCCACTTAAAATCACAG
GGTTTCCCGCTCCTGGTAATGTCCAGTGTTGGTGAGGGGAAGTCAATGAG
CGTCTTACTGTCAGTGTCTGTTCTGTTGATTGTAATTT

Coding sequence (CDS) from alignment at sc0000694:89333..89720

>TCONS_00028641 ID=TCONS_00028641|Name=TCONS_00028641|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000694:89333..89720 (Clytia hemisphaerica)
TTGGTTTGAATTTGTTAATGGTTGTTCGGCAGTTGCGTTTGGTTGGACTT
CTGTGGCCGTGACTTCAATGACTTCAACTTCTCTCTCTCGTTCTTGCGGT
GATGTTATCCAATCTTTAAGGCTGTTGTTGTTGACAAAATTGTCAATTTG
CCCAATGTCATTCAATTTAATGTCATTTATTTTGTCAATTCTGGTATGGA
TTCTATTGAactcaattttcatccagtctTTTAGTTCGTCCAATTTGGTC
TCAAAGTTTGACTCTCGAGGTCTTGACGAAGCTCCACTTAAAATCACAGG
GTTTCCCGCTCCTGGTAATGTCCAGTGTTGGTGAGGGGAAGTCAATGAGC
GTCTTACTGTCAGTGTCTGTTCTGTTGATTGTAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016251XLOC_016251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028641-exon-sc0000694-1491911889:89333..89720TCONS_00028641-exon-sc0000694-1491911889:89333..89720Clytia hemisphaericaexon
TCONS_00028641-exon-sc0000694-1510915933:89333..89720TCONS_00028641-exon-sc0000694-1510915933:89333..89720Clytia hemisphaericaexon
TCONS_00028641-exon-sc0000694-1575043694:89333..89720TCONS_00028641-exon-sc0000694-1575043694:89333..89720Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028641-proteinTCONS_00028641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000694supercontigsc0000694:89333..89720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1982	0	0	0	0.267283	0.422422	0	0.238557	0	0.20688	0	0.172059	0.263633	0	0.225089	0.447431	0	0	0	0.220473	0	0	0	0	0	0	0	0	0	0.224131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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