TCONS_00028646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028646
Unique NameTCONS_00028646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028646 ID=TCONS_00028646|Name=TCONS_00028646|organism=Clytia hemisphaerica|type=transcript|length=576bp
AAAATTTAGTATGTGTATTAAATAGTTTGCAAAATAAGTATAATAAATTT
TGCAGGTTGTGTCTTTAACATGTGATGGGCCATCTTGCCATCTTGCAATG
ATTAACGAACTTGGTGGAAGCATGAATGTCAACAAttttaaaccatattt
ttgCCATCCTTCTGATAGTTCCAAGTTAATTTATGTTCTTCTTGATGTTT
GCCACATGCTAAAATTGTTGCGGAACACCCTTGGTGATTATGGCATTCTA
AAAGACGCAGATGGTAATGAGATAAAATGGCAGTACATTGAAAGGTTACA
AAAACTACAAGGAAGTGAAGGGATAAGACTTGCAACTAAACTACGACTGG
CACACATAAACTGGGTCtcacaaaaaatgaaagtcAACCTTGCTGCTCAA
ACATTTAGAAGAGGTCAGTGGAATGTTTACGAATGAAAAGGGAAATATCG
AAATGATCGCTCGTTTAGATGATAATGAAAAGACTGAAGTTGCATCTCCT
GTAAATCTACCACTGTCATCAGCAGCATCAATTGAAGCATCAGAACCTCC
CAATAAAAAGACTAAAGATTGGCAAC
Run BLAST on NCBI

protein sequence of TCONS_00028646-protein

>TCONS_00028646-protein ID=TCONS_00028646-protein|Name=TCONS_00028646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MINELGGSMNVNNFKPYFCHPSDSSKLIYVLLDVCHMLKLLRNTLGDYGI
LKDADGNEIKWQYIERLQKLQGSEGIRLATKLRLAHINWVSQKMKVNLAA
QTFRRGQWNVYE
Run BLAST on NCBI

transcript from alignment at sc0000695:112558..113484+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028646 ID=TCONS_00028646|Name=TCONS_00028646|organism=Clytia hemisphaerica|type=transcript|length=927bp|location=Sequence derived from alignment at sc0000695:112558..113484+ (Clytia hemisphaerica)
AAAATTTAGTATGTGTATTAAATAGTTTGCAAAATAAGTATAATAAATTT
TGCAGGTTGTGTCTTTAACATGTGATGGGCCATCTTGCCATCTTGCAATG
ATTAACGAACTTGGTGGAAGCATGAATGTCAACAAttttaaaccatattt
ttgCCATCCTTCTGATAGTTCCAAGTTAATTTATGTTCTTCTTGATGTTT
GCCACATGCTAAAATTGTTGCGGAACACCCTTGGTGATTATGGCATTCTA
AAAGACGCAGATGGTAATGAGATAAAATGGCAGTACATTGAAAGGTTACA
AAAACTACAAGGAAGTGAAGGGATAAGGTAATCTTTATATACTACTTGCT
AAAATGGTAGGTCAGCACTGCAGGAACCATCTTTTCGAAACAATACGTTT
AATATATACATGTCTCAGGTGTCTGATTTATGTTACCGGCCACCGAGATC
ACTACCTGTGAGTGATCCAGCTCTGAGACGGAAAGGATAGTGAGGTAAAT
ATACCCGGCTAATTCCACGAAAGGTAACAATCCATAAAGTGAAACCTTAT
TtgctgaaatttcaaaataaggtCTCTTTATGGtggacaaaaataaattc
atgGTGACTATGAAGGAATGAGCTttacaatagctttaaaaaccTCATAC
TCATCATACATTATTCATTCTAATCTAGACTTGCAACTAAACTACGACTG
GCACACATAAACTGGGTCtcacaaaaaatgaaagtcAACCTTGCTGCTCA
AACATTTAGAAGAGGTCAGTGGAATGTTTACGAATGAAAAGGGAAATATC
GAAATGATCGCTCGTTTAGATGATAATGAAAAGACTGAAGTTGCATCTCC
TGTAAATCTACCACTGTCATCAGCAGCATCAATTGAAGCATCAGAACCTC
CCAATAAAAAGACTAAAGATTGGCAAC

Coding sequence (CDS) from alignment at sc0000695:112558..113484+

>TCONS_00028646 ID=TCONS_00028646|Name=TCONS_00028646|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000695:112558..113484+ (Clytia hemisphaerica)
ATGATTAACGAACTTGGTGGAAGCATGAATGTCAACAAttttaaaccata
tttttgCCATCCTTCTGATAGTTCCAAGTTAATTTATGTTCTTCTTGATG
TTTGCCACATGCTAAAATTGTTGCGGAACACCCTTGGTGATTATGGCATT
CTAAAAGACGCAGATGGTAATGAGATAAAATGGCAGTACATTGAAAGGTT
ACAAAAACTACAAGGAAGTGAAGGGATAAGACTTGCAACTAAACTACGAC
TGGCACACATAAACTGGGTCtcacaaaaaatgaaagtcAACCTTGCTGCT
CAAACATTTAGAAGAGGTCAGTGGAATGTTTACGAATGAATGATTAACGA
ACTTGGTGGAAGCATGAATGTCAACAAttttaaaccatatttttgCCATC
CTTCTGATAGTTCCAAGTTAATTTATGTTCTTCTTGATGTTTGCCACATG
CTAAAATTGTTGCGGAACACCCTTGGTGATTATGGCATTCTAAAAGACGC
AGATGGTAATGAGATAAAATGGCAGTACATTGAAAGGTTACAAAAACTAC
AAGGAAGTGAAGGGATAAGACTTGCAACTAAACTACGACTGGCACACATA
AACTGGGTCtcacaaaaaatgaaagtcAACCTTGCTGCTCAAACATTTAG
AAGAGGTCAGTGGAATGTTTACGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016255XLOC_016255Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028646-proteinTCONS_00028646-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028646-exon-sc0000695-1491911889:112558..112884TCONS_00028646-exon-sc0000695-1491911889:112558..112884Clytia hemisphaericaexon
TCONS_00028646-exon-sc0000695-1510915933:112558..112884TCONS_00028646-exon-sc0000695-1510915933:112558..112884Clytia hemisphaericaexon
TCONS_00028646-exon-sc0000695-1575043694:112558..112884TCONS_00028646-exon-sc0000695-1575043694:112558..112884Clytia hemisphaericaexon
TCONS_00028646-exon-sc0000695-1491911889:113236..113484TCONS_00028646-exon-sc0000695-1491911889:113236..113484Clytia hemisphaericaexon
TCONS_00028646-exon-sc0000695-1510915933:113236..113484TCONS_00028646-exon-sc0000695-1510915933:113236..113484Clytia hemisphaericaexon
TCONS_00028646-exon-sc0000695-1575043694:113236..113484TCONS_00028646-exon-sc0000695-1575043694:113236..113484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000695supercontigsc0000695:112558..113484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0942681	0	0	0.130364	0.309047	0.124284	0.814472	0.325846	0.403613	0.587636	0.836958	0.642919	0.467374	0.384245	0.294539	0	0.297526	1.02762	0.967797	0.560794	0.410303	0.332518	0.201538	1.86822	1.01893	0.265106	0.424393	0	0.218635
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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