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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028667 ID=TCONS_00028667|Name=TCONS_00028667|organism=Clytia hemisphaerica|type=transcript|length=2778bp
GGCTAATTGATTGACAGGTTGGATGACATGTATCAGAGATGTTGAATCAT
GATTTTATTAACTCAGATTTGTATATGATGATGATTATCATTGTTTTAGC
ATTGAAAATGTGTCAAAGAGACATAAATGGTGAAAATCAAATAAGTAAAC
TACGTTGTGAAATAGTACTTGAGCAGGTTTTGAACCTTAGACCCCCATAT
TCCGATGTGTGAAAGTTACCCATCCACTGTACCATCAGGCCTTAGATAcc
aggaaggaaatattttattatATCTAAAAATGGCGAACGCCCCCTGAATG
TattattatcaaaaaaaaagaagtttatgAATGGTGGAATAATAGTAAAG
TATAGTAGAGAGAAATACTCTTACGTTGACTTGGCGATTGTCAAATGAAT
AAATAACAGCCAACGAGCGACAGCAACAGCAGCCAAAAAACGGTGACGAC
AATAGAATAGTAGAAAACAAGTagaaaatgactttaaaaaaacGATTTGA
TGGCTATTTGTAGCTGAATCAAATTTTCGCTGGCGTGGATGCTCTTTGCA
GGTTTTATGCGAGTGAGTgatagaaattgaaaaagaaacaaatttaTGTA
TATTGGATGTACCATTTTTATAAACAGAAACCAAGGACACGAATatactg
caatgtcttcttcgGCTTTACTATTGTTGGATTTTCCCGTAGCGAATTCC
AGGAAGCTGTGGGTCATGTGGGGAAACTGGACGGAAGTAGAAGTGAAAGT
GATGGTAAGGTATTGTTAGTATTCTTTTTTTGGAGTAAGTTGGGATTGGG
AGTATTCTAAATCGAGCTCTAGTGCCGTTTGTACTTGGAACCTTGGTGTT
GTGctgaaagaaatcaagaaaggGAAAGTGAAAATGGGAGAAGACGAAAG
TGGAAGGAGGGGGTGGCAGAAAAAATGTTATACTAGAGGTCAGGATGATT
TAGGATTAACAGAGTATGGAGTGTGTGAAAGACCAGAATATAGTGTTGAA
GTATTACTATTTAGAGTAAATTGAAATCAGAAGTATCATAGTGGGGTTCG
AACTTGTTGTGCCAGAAGAAatcgagaaatcgaaagtgaaagaaagaaat
cgaaagtgaaaaagagaaatcgaaagtgaaaggaCTGCAATCCAAGATGG
CGAGGGGACAGCAGAACATGGAGTGTGTGGAAGACCAGAATTGTGTATTA
GAGTGCTGCTATTACGAGTAGGTGAGTTGAAATCGGAAGTGTTCCAGTGG
GGTTCGAACTTGGGATAGTAGTGTTGTGATAGTAAAAATCGAGAAAGTGA
AAGTGAGGAATCGAAATTGGAAAGGAGCAATAGTGAAAAATCAGGACGAT
GTAGAGGACAAGAGAGCATGGCATGAGCTCTAGAGTAGAAGACCCAAATG
GTGTATTGCTGTTCAGAGTGAAAAGTTAGGATCGGAAGTGCTTTAGTAAG
GCTCAACCTTGGGATCTCAATGTTGTTCTGGAGGAGATTgaaaaatcgaa
agtgaaaggaGGAAATCGAGCGTGACTGAGAAAGTATGGAGCTAGACCAC
ATCAAGATGGTGGAGAGTCAGCAGAGAAGATTTGGCTGATTAGTCAGAGC
GCGACGAGCattttttttccccgataatttttcctatccgtcattccGTG
ATTGAAGGGGTAAAAggaggtagggtcagggttgctagtaacggcttgtc
actgtgccgggtgcatactcggcgccttgggccccgcagggttgctagta
acggctcgaatttcagtcaggttttaAAGAGgagtacttttacccatatt
ataataacacgCTCTGAGCATTTAGCGAAATGTAGCAGAGACCAAGTTAA
GCAGAGTTCGGGGTGTGTGGACGATGTAATAGTGCAGTGAAATGTTGCAT
TTTGAGATCAGTTGAAGTTGAAAGTAACTATAGTAGGGTTGTTTAAACAT
GGGACCTTAGAGCTGACTGAAAGAAGTCCAAAAACTGAAAGTGACAGAGA
AATGAATAGAACCTAGGAAAGGAAGGAATCAAGTCCAGCATGATGGAATA
GTAAAAAGGTTCCTAAGGTATGAATTGGGACAAAAAGTTAGGATCGGAAG
TGCTTTAGTAAGGCTCAACCTTGGGATCTCAATGTTGTTCTGGAGGAGAT
TgaaaaatcgaaagtgaaaggaGGAAATCGAGCGTGACTGAGAAAGTATA
GAGTTAGACCACATCAAGATGGTGGAGAGTCAGCAGAGAAGATTTGGCTG
ATTAGTCAGAGCGCGACGAGCATTTTTTTCCCGATAATTTTTCCTATTCG
TCATTCCGTGATTCAGGGGGTGAAAggaggtagggtcagggttgctagta
acggcttGtcactgtgccgggtgcatactcggcgccttgggccccgcagg
gttgctagtaacggctcgaatttcagtcaggttttaAAGAGgagtacttt
tacccatattataataacacgCTCTGAGCATTTAGCGAAATGTAGCAGAG
ACCAAGTTAAGCAGAGTTCGGGATGTGTGGACGATATGATAGTGCAGTGA
AATGTAGCTGTTTGAGATCAGTTGAAGTTGAAAGTAACTATAGTAGGGTT
GTTTAAACATGGGACCTTAGAGCTGACTGAAAGAAGTCCAAAAACTGAAA
GTAACAGAGAAATGAATAGAACCTAGGAAAGGAAGGAATCAAGTCCAGCA
TGATGGAATAGTAAAAAGGTTCCTAAGGTACGAATTGGGACAAAAAGTTA
GGATCGGAAGTGCTTTAGTAAGGCTCAA Run BLAST on NCBI transcript from alignment at sc0000695:168989..171836- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028667 ID=TCONS_00028667|Name=TCONS_00028667|organism=Clytia hemisphaerica|type=transcript|length=2848bp|location=Sequence derived from alignment at sc0000695:168989..171836- (Clytia hemisphaerica)
GGCTAATTGATTGACAGGTTGGATGACATGCTCTAAAGATGTTATCGAGA
AATGATTTTTTTAAATTCAGATTTGCNTGATTGACAGGTTGGATGACATG
TATCAGAGATGTTGAATCATGATTTTATTAACTCAGATTTGTATATGATG
ATGATTATCATTGTTTTAGCATTGAAAATGTGTCAAAGAGACATAAATGG
TGAAAATCAAATAAGTAAACTACGTTGTGAAATAGTACTTGAGCAGGTTT
TGAACCTTAGACCCCCATATTCCGATGTGTGAAAGTTACCCATCCACTGT
ACCATCAGGCCTTAGATACCAGGAAGGAAATATTTTATTATATCTAAAAA
TGGCGAACGCCCCCTGAATGTATTATTATCAAAAAAAAAGAAGTTTATGA
ATGGTGGAATAATAGTAAAGTATAGTAGAGAGAAATACTCTTACGTTGAC
TTGGCGATTGTCAAATGAATAAATAACAGCCAACGAGCGACAGCAACAGC
AGCCAAAAAACGGTGACGACAATAGAATAGTAGAAAACAAGTAGAAAATG
ACTTTAAAAAAACGATTTGATGGCTATTTGTAGCTGAATCAAATTTTCGC
TGGCGTGGATGCTCTTTGCAGGTTTTATGCGAGTGAGTGATAGAAATTGA
AAAAGAAACAAATTTATGTATATTGGATGTACCATTTTTATAAACAGAAA
CCAAGGACACGAATATACTGCAATGTCTTCTTCGGCTTTACTATTGTTGG
ATTTTCCCGTAGCGAATTCCAGGAAGCTGTGGGTCATGTGGGGAAACTGG
ACGGAAGTAGAAGTGAAAGTGATGGTAAGGTATTGTTAGTATTCTTTTTT
TGGAGTAAGTTGGGATTGGGAGTATTCTAAATCGAGCTCTAGTGCCGTTT
GTACTTGGAACCTTGGTGTTGTGCTGAAAGAAATCAAGAAAGGGAAAGTG
AAAATGGGAGAAGACGAAAGTGGAAGGAGGGGGTGGCAGAAAAAATGTTA
TACTAGAGGTCAGGATGATTTAGGATTAACAGAGTATGGAGTGTGTGAAA
GACCAGAATATAGTGTTGAAGTATTACTATTTAGAGTAAATTGAAATCAG
AAGTATCATAGTGGGGTTCGAACTTGTTGTGCCAGAAGAAATCGAGAAAT
CGAAAGTGAAAGAAAGAAATCGAAAGTGAAAAAGAGAAATCGAAAGTGAA
AGGACTGCAATCCAAGATGGCGAGGGGACAGCAGAACATGGAGTGTGTGG
AAGACCAGAATTGTGTATTAGAGTGCTGCTATTACGAGTAGGTGAGTTGA
AATCGGAAGTGTTCCAGTGGGGTTCGAACTTGGGATAGTAGTGTTGTGAT
AGTAAAAATCGAGAAAGTGAAAGTGAGGAATCGAAATTGGAAAGGAGCAA
TAGTGAAAAATCAGGACGATGTAGAGGACAAGAGAGCATGGCATGAGCTC
TAGAGTAGAAGACCCAAATGGTGTATTGCTGTTCAGAGTGAAAAGTTAGG
ATCGGAAGTGCTTTAGTAAGGCTCAACCTTGGGATCTCAATGTTGTTCTG
GAGGAGATTGAAAAATCGAAAGTGAAAGGAGGAAATCGAGCGTGACTGAG
AAAGTATGGAGCTAGACCACATCAAGATGGTGGAGAGTCAGCAGAGAAGA
TTTGGCTGATTAGTCAGAGCGCGACGAGCATTTTTTTTCCCCGATAATTT
TTCCTATCCGTCATTCCGTGATTGAAGGGGTAAAAGGAGGTAGGGTCAGG
GTTGCTAGTAACGGCTTGTCACTGTGCCGGGTGCATACTCGGCGCCTTGG
GCCCCGCAGGGTTGCTAGTAACGGCTCGAATTTCAGTCAGGTTTTAAAGA
GGAGTACTTTTACCCATATTATAATAACACGCTCTGAGCATTTAGCGAAA
TGTAGCAGAGACCAAGTTAAGCAGAGTTCGGGGTGTGTGGACGATGTAAT
AGTGCAGTGAAATGTTGCATTTTGAGATCAGTTGAAGTTGAAAGTAACTA
TAGTAGGGTTGTTTAAACATGGGACCTTAGAGCTGACTGAAAGAAGTCCA
AAAACTGAAAGTGACAGAGAAATGAATAGAACCTAGGAAAGGAAGGAATC
AAGTCCAGCATGATGGAATAGTAAAAAGGTTCCTAAGGTATGAATTGGGA
CAAAAAGTTAGGATCGGAAGTGCTTTAGTAAGGCTCAACCTTGGGATCTC
AATGTTGTTCTGGAGGAGATTGAAAAATCGAAAGTGAAAGGAGGAAATCG
AGCGTGACTGAGAAAGTATAGAGTTAGACCACATCAAGATGGTGGAGAGT
CAGCAGAGAAGATTTGGCTGATTAGTCAGAGCGCGACGAGCATTTTTTTC
CCGATAATTTTTCCTATTCGTCATTCCGTGATTCAGGGGGTGAAAGGAGG
TAGGGTCAGGGTTGCTAGTAACGGCTTGTCACTGTGCCGGGTGCATACTC
GGCGCCTTGGGCCCCGCAGGGTTGCTAGTAACGGCTCGAATTTCAGTCAG
GTTTTAAAGAGGAGTACTTTTACCCATATTATAATAACACGCTCTGAGCA
TTTAGCGAAATGTAGCAGAGACCAAGTTAAGCAGAGTTCGGGATGTGTGG
ACGATATGATAGTGCAGTGAAATGTAGCTGTTTGAGATCAGTTGAAGTTG
AAAGTAACTATAGTAGGGTTGTTTAAACATGGGACCTTAGAGCTGACTGA
AAGAAGTCCAAAAACTGAAAGTAACAGAGAAATGAATAGAACCTAGGAAA
GGAAGGAATCAAGTCCAGCATGATGGAATAGTAAAAAGGTTCCTAAGGTA
CGAATTGGGACAAAAAGTTAGGATCGGAAGTGCTTTAGTAAGGCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028667-exon-sc0000695-1575043694:171810..171836 | TCONS_00028667-exon-sc0000695-1575043694:171810..171836 | Clytia hemisphaerica | exon |
| TCONS_00028667-exon-sc0000695-1575043694:168989..171739 | TCONS_00028667-exon-sc0000695-1575043694:168989..171739 | Clytia hemisphaerica | exon |
| TCONS_00028667-exon-sc0000695-1510915933:171810..171836 | TCONS_00028667-exon-sc0000695-1510915933:171810..171836 | Clytia hemisphaerica | exon |
| TCONS_00028667-exon-sc0000695-1510915933:168989..171739 | TCONS_00028667-exon-sc0000695-1510915933:168989..171739 | Clytia hemisphaerica | exon |
| TCONS_00028667-exon-sc0000695-1491911889:171810..171836 | TCONS_00028667-exon-sc0000695-1491911889:171810..171836 | Clytia hemisphaerica | exon |
| TCONS_00028667-exon-sc0000695-1491911889:168989..171739 | TCONS_00028667-exon-sc0000695-1491911889:168989..171739 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000695 | supercontig | sc0000695:168989..171836 - |
Blast
The following BLAST results are available for this feature:
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