TCONS_00028670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028670
Unique NameTCONS_00028670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028670 ID=TCONS_00028670|Name=TCONS_00028670|organism=Clytia hemisphaerica|type=transcript|length=363bp
GTAAGTGTGCTTTTGGAAGGAATCGAGATACGGTTGCTTATGGACTATGT
CATAGAACTTTGATACGAATTCGATCCATTTGTCAGCTTCTCCTGCAAAT
ACTATCAACTCCTGTCTGGGTAACCTTTGTTGAATGAGTAACTCCATTTG
GATATTCCTTGAATGATTGGTATCTGGGATGGTCAAATTATTTGGATCTA
ATTCATCTATCCATTGGTCTAGAGATCTGCGTTCCACGATGGGATGAGTG
CCTTGAATCGGGCGATTTGAATTAACAAACTGCACTGATTTGAGAGATCT
CTTTGAAGCTTCTGTTGGTAAAGATGAAGTGACAACATTTTTCATCTGAG
GAGGCAATGTTGT
Run BLAST on NCBI

protein sequence of TCONS_00028670-protein

>TCONS_00028670-protein ID=TCONS_00028670-protein|Name=TCONS_00028670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
TTLPPQMKNVVTSSLPTEASKRSLKSVQFVNSNRPIQGTHPIVERRSLDQ
WIDELDPNNLTIPDTNHSRNIQMELLIQQRLPRQELIVFAGEADKWIEFV
SKFYDIVHKQPYLDSFQKHTY
Run BLAST on NCBI

transcript from alignment at sc0000695:86476..86838

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028670 ID=TCONS_00028670|Name=TCONS_00028670|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0000695:86476..86838 (Clytia hemisphaerica)
ACAACATTGCCTCCTCAGATGAAAAATGTTGTCACTTCATCTTTACCAAC
AGAAGCTTCAAAGAGATCTCTCAAATCAGTGCAGTTTGTTAATTCAAATC
GCCCGATTCAAGGCACTCATCCCATCGTGGAACGCAGATCTCTAGACCAA
TGGATAGATGAATTAGATCCAAATAATTTGACCATCCCAGATACCAATCA
TTCAAGGAATATCCAAATGGAGTTACTCATTCAACAAAGGTTACCCAGAC
AGGAGTTGATAGTATTTGCAGGAGAAGCTGACAAATGGATCGAATTCGTA
TCAAAGTTCTATGACATAGTCCATAAGCAACCGTATCTCGATTCCTTCCA
AAAGCACACTTAC

Coding sequence (CDS) from alignment at sc0000695:86476..86838

>TCONS_00028670 ID=TCONS_00028670|Name=TCONS_00028670|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000695:86476..86838 (Clytia hemisphaerica)
ACAACATTGCCTCCTCAGATGAAAAATGTTGTCACTTCATCTTTACCAAC
AGAAGCTTCAAAGAGATCTCTCAAATCAGTGCAGTTTGTTAATTCAAATC
GCCCGATTCAAGGCACTCATCCCATCGTGGAACGCAGATCTCTAGACCAA
TGGATAGATGAATTAGATCCAAATAATTTGACCATCCCAGATACCAATCA
TTCAAGGAATATCCAAATGGAGTTACTCATTCAACAAAGGTTACCCAGAC
AGGAGTTGATAGTATTTGCAGGAGAAGCTGACAAATGGATCGAATTCGTA
TCAAAGTTCTATGACATAGTCCATAAGCAACCGTATCTCGATTCCTTCCA
AAAGCACACTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016261XLOC_016261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028670-exon-sc0000695-1491911889:86476..86838TCONS_00028670-exon-sc0000695-1491911889:86476..86838Clytia hemisphaericaexon
TCONS_00028670-exon-sc0000695-1510915933:86476..86838TCONS_00028670-exon-sc0000695-1510915933:86476..86838Clytia hemisphaericaexon
TCONS_00028670-exon-sc0000695-1575043694:86476..86838TCONS_00028670-exon-sc0000695-1575043694:86476..86838Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028670-proteinTCONS_00028670-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000695supercontigsc0000695:86476..86838 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303408	1.51525	0	0.510387	0	0	0.296183	0.277283	0	0.240464	0	0.153428	0	0	0	0	0	0	0	0	0	0	0.109474	0	0.494687	0	0	0	0.255698	0.260516
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top