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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028671 ID=TCONS_00028671|Name=TCONS_00028671|organism=Clytia hemisphaerica|type=transcript|length=2172bp
TGACTATCACCACACATGAGTATGATTACtgtacgtgatttggaaatttc
ctCTAACAAATCGAGCTTCAGGCCCCAGTCATCCCTGAGTTGACGATAGG
TTTTTATCCAAATTTAAAATCACCGAGGAACCAAATCGTGGAAAATTCTG
TGGTTCACACATTCATCACATTTTTTCACGATCGGCTTACGACGATTCGT
CTGTTCACTTGTCAAGCGCCCTTTTAAAAATGAGTGATTTGCCGCCTGCT
GAAAACGCCTGCAGAAAAACAAGCCAAACCTAATCAGAACGAAGAGAAGC
GCGGTGAATGTTCCGAATGTTATATATTATTTTCCATTGCGTCTTCAATG
TTTTGTTCTCTTCGATCGAAGtctaaaaaaagagaaaatatgatAAAGAT
CAAACATTAATCAAAGCTATCAAACACTTATCGAAGCTTATCGAAGatta
tcgaacttaatcgaaacCTATCGAAAGTTAATCGAAGttatcgaacataa
tcgaatatatCGATAGCTAATCGAATTGATCGAATGGTAATCGAACTAAT
TGAGAAAAACCTTGGAAAATTCGATTACGGCTCGATAGTTTCGATTAATC
GAAGCCTAATCGAAGTATTAATTTCGATTAGTTTCGATaaattcgattaa
aaatcgaattcgattttgttcgatagATTACGCCTGGCTGAGAACGATCT
CGATTATCGGTTCACCCAGTGGTCCCTATAAAAGGCAACGaatgaatcaa
aaaaaattgtcatgaaACTAATTTTGCGGTAGGGCTTCATTAGATTATTG
AGCTTATCTTTAGATAGAAGTCAACGACCTTAAATAGGGGtgtatgacaa
aattattttactagAAGAAAAGATATATATTAAAATGGTATAAAGGATGA
CGATAAAACCAGGTGAAACATTCGAGAACGAAATACATTTTCCTAATTAA
TGTTGTATGTGCAATATGACCATGCGTTGACTTCTCGATCCGGGATACTT
GATAGCTGATAGCTCTAGAAAGAAAAGCAatatattaaaattattttaat
cttcaaCTGGCAAAACCACATCTTAATACCGATCAAATATGAAACAGTTG
ACACACAACGCGTTTCAAAACCtttctaacatttttaaatGTCCATCATG
TGGCGTTAGAAGATCTTTACAGTCCCCATACCGGTGAAATTCTGTACTCA
AATACCTTACGTATCTGCCGCTTTAGGTGGATTAAACATCGCGTGGagta
attgaaaatggcatCGACCTCTAACTTCGCGTGTAGTAACTGAAAATGGC
AGCGACCTCTAACGTTAGAGGTCgatgaaaatggtaaatttgtaatttta
atgagttttggcccttttcgcaaaACTTAGTTCTTGCTATAAATTGACAA
TCCGttaaaactaaagaaatttggtgaaatctagtgaagcgaattttttt
aaattctcaattcTCTAAAAAAAAGTACATGCAAAAATTAATCGACTTAG
GGTAATAATAGCGGTATTCTAAGTCCCGTCATTAAGACAAAAGTGACGAG
AAAGTAAAAAGTCCCACTCGCACAAGACAGagatgtaatgtgtattccGA
CAAGGACACGATATGTATttccttcgttgtgagacagggagATAGGAAAG
CAAAACATCACTCGCACACTcgcatgagacagggatgtaatatgGTCTAT
TTCCTTTGTTGTGACACAGGGAGGTGCGAGAGGCAGGAGAGCTAAAATAC
CACTCGCGTGAtacaggctgcatcatttgaaacattcaggcgtgtggtca
atcacactcctaaaatcttaattttagtaatttaggcgtgtgataaggag
tgctatgcaCAACTTTCAGTTATGAAACTTACTTTATGGGGTGTGATTGA
TCGCACTCaagcaaaaaatttcaaacatggAAACCGAACAATTGTGTTGG
AAAAcaattttaggtgtgtgtggaggtgtgcgcgtgctatcgcacgcctc
aaatgatgcagcctggtGATACAGGGATAATACGTAtctgataaaataat
atttcttccCACTATTTTACCGAGCTTTTTACGTTGCCTTAATATACATT
ATTGCTTGTgagaaagcataaaaaagcaagCTTTTATCCCCTATTGATCG
TGATATAAAGAGGGCCTTAGAT Run BLAST on NCBI transcript from alignment at sc0000695:153271..155442 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028671 ID=TCONS_00028671|Name=TCONS_00028671|organism=Clytia hemisphaerica|type=transcript|length=2172bp|location=Sequence derived from alignment at sc0000695:153271..155442 (Clytia hemisphaerica)
ATCTAAGGCCCTCTTTATATCACGATCAATAGGGGATAAAAGcttgcttt
tttatgctttctcACAAGCAATAATGTATATTAAGGCAACGTAAAAAGCT
CGGTAAAATAGTGggaagaaatattattttatcagaTACGTATTATCCCT
GTATCaccaggctgcatcatttgaggcgtgcgatagcacgcgcacacctc
cacacacacctaaaattgTTTTCCAACACAATTGTTCGGTTTccatgttt
gaaattttttgcttGAGTGCGATCAATCACACCCCATAAAGTAAGTTTCA
TAACTGAAAGTTGtgcatagcactccttatcacacgcctaaattactaaa
attaagattttaggagtgtgattgaccacacgcctgaatgtttcaaatga
tgcagcctgtaTCACGCGAGTGGTATTTTAGCTCTCCTGCCTCTCGCACC
TCCCTGTGTCACAACAAAGGAAATAGACcatattacatccctgtctcatg
cgAGTGTGCGAGTGATGTTTTGCTTTCCTATctccctgtctcacaacgaa
ggaaATACATATCGTGTCCTTGTCggaatacacattacatctCTGTCTTG
TGCGAGTGGGACTTTTTACTTTCTCGTCACTTTTGTCTTAATGACGGGAC
TTAGAATACCGCTATTATTACCCTAAGTCGATTAATTTTTGCATGTACTT
TTTTTTAGAgaattgagaatttaaaaaaattcgcttcactagatttcacc
aaatttctttagttttaaCGGATTGTCAATTTATAGCAAGAACTAAGTtt
tgcgaaaagggccaaaactcattaaaattacaaatttaccattttcatcG
ACCTCTAACGTTAGAGGTCGCTGCCATTTTCAGTTACTACACGCGAAGTT
AGAGGTCGatgccattttcaattactCCACGCGATGTTTAATCCACCTAA
AGCGGCAGATACGTAAGGTATTTGAGTACAGAATTTCACCGGTATGGGGA
CTGTAAAGATCTTCTAACGCCACATGATGGACatttaaaaatgttagaaa
GGTTTTGAAACGCGTTGTGTGTCAACTGTTTCATATTTGATCGGTATTAA
GATGTGGTTTTGCCAGttgaagattaaaataattttaatatatTGCTTTT
CTTTCTAGAGCTATCAGCTATCAAGTATCCCGGATCGAGAAGTCAACGCA
TGGTCATATTGCACATACAACATTAATTAGGAAAATGTATTTCGTTCTCG
AATGTTTCACCTGGTTTTATCGTCATCCTTTATACCATTTTAATATATAT
CTTTTCTTctagtaaaataattttgtcatacaCCCCTATTTAAGGTCGTT
GACTTCTATCTAAAGATAAGCTCAATAATCTAATGAAGCCCTACCGCAAA
ATTAGTttcatgacaattttttttgattcattCGTTGCCTTTTATAGGGA
CCACTGGGTGAACCGATAATCGAGATCGTTCTCAGCCAGGCGTAATctat
cgaacaaaatcgaattcgatttttaatcgaatttATCGAAACTAATCGAA
ATTAATACTTCGATTAGGCTTCGATTAATCGAAACTATCGAGCCGTAATC
GAATTTTCCAAGGTTTTTCTCAATTAGTTCGATTACCATTCGATCAATTC
GATTAGCTATCGatatattcgattatgttcgataaCTTCGATTAACTTTC
GATAGgtttcgattaagttcgataatCTTCGATAAGCTTCGATAAGTGTT
TGATAGCTTTGATTAATGTTTGATCTTTatcatattttctctttttttag
aCTTCGATCGAAGAGAACAAAACATTGAAGACGCAATGGAAAATAATATA
TAACATTCGGAACATTCACCGCGCTTCTCTTCGTTCTGATTAGGTTTGGC
TTGTTTTTCTGCAGGCGTTTTCAGCAGGCGGCAAATCACTCATTTTTAAA
AGGGCGCTTGACAAGTGAACAGACGAATCGTCGTAAGCCGATCGTGAAAA
AATGTGATGAATGTGTGAACCACAGAATTTTCCACGATTTGGTTCCTCGG
TGATTTTAAATTTGGATAAAAACCTATCGTCAACTCAGGGATGACTGGGG
CCTGAAGCTCGATTTGTTAGaggaaatttccaaatcacgtacaGTAATCA
TACTCATGTGTGGTGATAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028671-exon-sc0000695-1491911889:153271..155442 | TCONS_00028671-exon-sc0000695-1491911889:153271..155442 | Clytia hemisphaerica | exon |
| TCONS_00028671-exon-sc0000695-1510915933:153271..155442 | TCONS_00028671-exon-sc0000695-1510915933:153271..155442 | Clytia hemisphaerica | exon |
| TCONS_00028671-exon-sc0000695-1575043694:153271..155442 | TCONS_00028671-exon-sc0000695-1575043694:153271..155442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000695 | supercontig | sc0000695:153271..155442 . |
Blast
The following BLAST results are available for this feature:
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