TCONS_00028672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028672
Unique NameTCONS_00028672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028672 ID=TCONS_00028672|Name=TCONS_00028672|organism=Clytia hemisphaerica|type=transcript|length=586bp
TTCCAGTGTAAGCTCATTTTATTCAATAGGTTGGTTTAAACCGCCGGGGT
GACTCGTATTGTTTGACTAAATTTAACCAATTTGCGGAATGATAATTATG
TTGTTGTAGAGACCGAGTGCAACATTGTAAAtcgaaaaataaaggaaaaa
ggATGCCCTACAGAAGGAAGAGAATCTCTTGGAAAAACAAGTCGAGGTTA
TGGGGATGGCTGTGAATGTTTTGAAGGAGAGTTGTAATGGTCGAACAAAC
GATCAAGATGATGAGAATGAGGTGTTTGGAAGACTCATCACCACTACCAT
AAGAAAGATCCCAAGTGGAGAAAAGAAGGAAAATCTAAAATTAAAGTTGC
AAtcatatatatttatttttaaaagagaCAAGTTCTAGGAACTCATTTTG
TTTCTTACACTCTCAGGTAAAGGGAGGGGATGTAAGAATAGATTTCGGAC
TTTCCTTATTATAGAGGTATTCTCAAAAAAGAGTAAGTATctgtcatcaa
tttttttcccaTAATATTATTagttattttacttttttcaactGTTCTTG
TGATTTTTGTAAAGAAAGGAAACATTAGTATCGAGA
Run BLAST on NCBI

transcript from alignment at sc0000695:178849..179434

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028672 ID=TCONS_00028672|Name=TCONS_00028672|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0000695:178849..179434 (Clytia hemisphaerica)
TCTCGATACTAATGTTTCCTTTCTTTACAAAAATCACAAGAACagttgaa
aaaagtaaaataactAATAATATTAtgggaaaaaaattgatgacagATAC
TTACTCTTTTTTGAGAATACCTCTATAATAAGGAAAGTCCGAAATCTATT
CTTACATCCCCTCCCTTTACCTGAGAGTGTAAGAAACAAAATGAGTTCCT
AGAACTTGtctcttttaaaaataaatatatatgaTTGCAACTTTAATTTT
AGATTTTCCTTCTTTTCTCCACTTGGGATCTTTCTTATGGTAGTGGTGAT
GAGTCTTCCAAACACCTCATTCTCATCATCTTGATCGTTTGTTCGACCAT
TACAACTCTCCTTCAAAACATTCACAGCCATCCCCATAACCTCGACTTGT
TTTTCCAAGAGATTCTCTTCCTTCTGTAGGGCATcctttttcctttattt
ttcgaTTTACAATGTTGCACTCGGTCTCTACAACAACATAATTATCATTC
CGCAAATTGGTTAAATTTAGTCAAACAATACGAGTCACCCCGGCGGTTTA
AACCAACCTATTGAATAAAATGAGCTTACACTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016263XLOC_016263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028672-exon-sc0000695-1491911889:178849..179434TCONS_00028672-exon-sc0000695-1491911889:178849..179434Clytia hemisphaericaexon
TCONS_00028672-exon-sc0000695-1510915933:178849..179434TCONS_00028672-exon-sc0000695-1510915933:178849..179434Clytia hemisphaericaexon
TCONS_00028672-exon-sc0000695-1575043694:178849..179434TCONS_00028672-exon-sc0000695-1575043694:178849..179434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000695supercontigsc0000695:178849..179434 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.19499	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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