|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028674 ID=TCONS_00028674|Name=TCONS_00028674|organism=Clytia hemisphaerica|type=transcript|length=1974bp
GGAAGATGAAATCAGCATTACTTGGACATAACAATGATGTTTTACCAAGA
GAGTGTTTCATACCTGGAGAAGACAAGCAATCATATGGAACACCTTTATG
GTTAGAATTCCACAAAGACAAAGTCTTCAGAAAGAATAAAATCCGATTTA
GCAAGTAATGGCAAAGCTATTGTTATTGAGAAACCATCAAAAAAAGTCGA
GGCAGATTACACTACTGAAGGCAATATCAAATTAAGTGGACGCAAAGTTG
ATGATGAAAATGTTCAAATACGAAATTGGATAGATGACATTGAGTTATAC
ACCATTGAATTACAACTCGAAGAAGTCTATGACATAAatgtatttttgaa
ttttacattGGATGATGAAACTGTAAGTGTTGTTATTGAAGTTGACAATA
TTAAAGTGGTGCACTTTTTCAAGTGTGTTTGGTCAGATGGTCAGATTTTA
TCCTTGGAGAAAATTCATTTTGTAGATCTTTACAGTCTTGGTATGAAATT
TATCAttgattcaaaattcaatgaTGCTGGAGATAAGATTGCTATTTCAT
CGCAGACTGGCAGTTTTCTTGTTTACTCTTTAAGAACTCAAGCTGTGTTA
CTTCTGGAAGAGGTGGCAGATTTTAAGGACTTTTTTTGGTCAACTGAtgt
aaaaaataatgaaatcttGGTTAATTTCTATAGGCAGGCTGGTTTAATTT
GCGTTTTCAGCTTGAACTACAAGGAAGGCAACTTAAACATTTTACAAGAG
ATAAATGTTTCGGACTTTCTTCAAGATGTAGATCAGTGGGACAAATGTTT
GTTGACAGTTTCTAGCGGTATCTCTTTGGCTTTGCTAGGGTATAACCACA
TTGTATATTTCATTGATCTTACCACTGGATTGCTTGTCCATCAATTGAAT
TCGCAAGTTGTCACAAGCTGTGATGTCCAGAATATCATGTTGAACTGGTG
TTCGAATGAAATTGTTACACTGTACAGGGATAAAGTTGCTGACGAATATT
TTATCCAAGTTAATCCTTTGTTGTATGGTAATAGAGTGGTGGAATCACTT
TTCAATACTGCATTGAAAACTGTCTTGCTTAAATATTCCATCAGTGATTT
GTTGCAAATGAATTTACCAGAAAGtatcaaaacatattttaaGTGACAAT
GGATTACAATTCAAAgcgtaataaaaattgggtttgAAAATTAAATCAAG
AAATTAGATCATAAAGataattttaaggattttgatTTATAAGTTTTTCA
CAAATTTGTCGGATTGTTAGTCTGTTAATCACATTGCCTGGGTCAACGAT
TTCTTCATATGATAGTAATGAGCNTCGGATTGTTAGTCTGTTCATCACAT
TGCCTGGGTCAACGATTTCTTCATATGATAGTAATGAACATATAGTGAga
gcggaaaggggtctgatacCCCCTCTTAAACGACCCCCCTTCTTGGCACC
CCCCccctaacctttaaaaatgcctatccctaaggattttggacaaaaat
agctaacaaatatatgtgaaatatctttagagagagaaagcgaaataata
agcctctttcttctttttgactcagacttactctaacagaaaacttcctt
tcatgaagaccaaatttcataacagtgcttgaaaataatctacaatatat
atgtaagcccccccctttttaaactATTCCCCTTCCTTGCTACCCCTTCC
TTGCTACCCCctgtttcatgaaaatttccgATCCttctcttctttatttt
ttcgaaaGGTGTCATCCCTCCTTTAGAAAGAGGGGGGATCCGAACTATGA
ATTAGTGTgacttcaatattttgaaaaggaaaaaccAATCAAACGGAGGA
GGAAACAAATATCAAACAGGGGTTATTCAATCTCCGTGAAAtcttaaagt
tttatttttttctcttacattttattttttttcttacaacTTAAAAAAGC
ACTTTTGAAAATGTCGAAAATGCC Run BLAST on NCBI transcript from alignment at sc0000697:21458..23572+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028674 ID=TCONS_00028674|Name=TCONS_00028674|organism=Clytia hemisphaerica|type=transcript|length=2115bp|location=Sequence derived from alignment at sc0000697:21458..23572+ (Clytia hemisphaerica)
GGAAGATGAAATCAGCATTACTTGGACATAACAATGATGTTTTACCAAGA
GAGTGTTTCATACCTGGAGAAGACAAGCAATCATATGGAACACCTTTATG
GTTAGAATTCCACAAAGACAAAGTCTTCAGAAAGAATAAAATCCGATTTA
GCAAGTAATGGCAAAGCTATTGTTATTGAGAAACCATCAAAAAAAGTCGA
GGGTGAGGTTTTCTTTGAATGTCCACTTTTATTCTACACACTTCAACACT
CGGAATTGTCACTGATGTCCAGCCAGAAATTCTGGTTTagttatttttca
ttctctTATACTCTGAGTAATAGTTTTCAATATGGTTTAGTAGCAGATTA
CACTACTGAAGGCAATATCAAATTAAGTGGACGCAAAGTTGATGATGAAA
ATGTTCAAATACGAAATTGGATAGATGACATTGAGTTATACACCATTGAA
TTACAACTCGAAGAAGTCTATGACATAAatgtatttttgaattttacatt
GGATGATGAAACTGTAAGTGTTGTTATTGAAGTTGACAATATTAAAGTGG
TGCACTTTTTCAAGTGTGTTTGGTCAGATGGTCAGATTTTATCCTTGGAG
AAAATTCATTTTGTAGATCTTTACAGTCTTGGTATGAAATTTATCAttga
ttcaaaattcaatgaTGCTGGAGATAAGATTGCTATTTCATCGCAGACTG
GCAGTTTTCTTGTTTACTCTTTAAGAACTCAAGCTGTGTTACTTCTGGAA
GAGGTGGCAGATTTTAAGGACTTTTTTTGGTCAACTGAtgtaaaaaataa
tgaaatcttGGTTAATTTCTATAGGCAGGCTGGTTTAATTTGCGTTTTCA
GCTTGAACTACAAGGAAGGCAACTTAAACATTTTACAAGAGATAAATGTT
TCGGACTTTCTTCAAGATGTAGATCAGTGGGACAAATGTTTGTTGACAGT
TTCTAGCGGTATCTCTTTGGCTTTGCTAGGGTATAACCACATTGTATATT
TCATTGATCTTACCACTGGATTGCTTGTCCATCAATTGAATTCGCAAGTT
GTCACAAGCTGTGATGTCCAGAATATCATGTTGAACTGGTGTTCGAATGA
AATTGTTACACTGTACAGGGATAAAGTTGCTGACGAATATTTTATCCAAG
TTAATCCTTTGTTGTATGGTAATAGAGTGGTGGAATCACTTTTCAATACT
GCATTGAAAACTGTCTTGCTTAAATATTCCATCAGTGATTTGTTGCAAAT
GAATTTACCAGAAAGtatcaaaacatattttaaGTGACAATGGATTACAA
TTCAAAgcgtaataaaaattgggtttgAAAATTAAATCAAGAAATTAGAT
CATAAAGataattttaaggattttgatTTATAAGTTTTTCACAAATTTGT
CGGATTGTTAGTCTGTTAATCACATTGCCTGGGTCAACGATTTCTTCATA
TGATAGTAATGAGCNTCGGATTGTTAGTCTGTTCATCACATTGCCTGGGT
CAACGATTTCTTCATATGATAGTAATGAACATATAGTGAgagcggaaagg
ggtctgatacCCCCTCTTAAACGACCCCCCTTCTTGGCACCCCCCcccta
acctttaaaaatgcctatccctaaggattttggacaaaaatagctaacaa
atatatgtgaaatatctttagagagagaaagcgaaataataagcctcttt
cttctttttgactcagacttactctaacagaaaacttcctttcatgaaga
ccaaatttcataacagtgcttgaaaataatctacaatatatatgtaagcc
cccccctttttaaactATTCCCCTTCCTTGCTACCCCTTCCTTGCTACCC
CctgtttcatgaaaatttccgATCCttctcttctttattttttcgaaaGG
TGTCATCCCTCCTTTAGAAAGAGGGGGGATCCGAACTATGAATTAGTGTg
acttcaatattttgaaaaggaaaaaccAATCAAACGGAGGAGGAAACAAA
TATCAAACAGGGGTTATTCAATCTCCGTGAAAtcttaaagttttattttt
ttctcttacattttattttttttcttacaacTTAAAAAAGCACTTTTGAA
AATGTCGAAAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028674-exon-sc0000697-1491911889:21458..21659 | TCONS_00028674-exon-sc0000697-1491911889:21458..21659 | Clytia hemisphaerica | exon |
| TCONS_00028674-exon-sc0000697-1510915933:21458..21659 | TCONS_00028674-exon-sc0000697-1510915933:21458..21659 | Clytia hemisphaerica | exon |
| TCONS_00028674-exon-sc0000697-1575043694:21458..21659 | TCONS_00028674-exon-sc0000697-1575043694:21458..21659 | Clytia hemisphaerica | exon |
| TCONS_00028674-exon-sc0000697-1491911889:21801..23572 | TCONS_00028674-exon-sc0000697-1491911889:21801..23572 | Clytia hemisphaerica | exon |
| TCONS_00028674-exon-sc0000697-1510915933:21801..23572 | TCONS_00028674-exon-sc0000697-1510915933:21801..23572 | Clytia hemisphaerica | exon |
| TCONS_00028674-exon-sc0000697-1575043694:21801..23572 | TCONS_00028674-exon-sc0000697-1575043694:21801..23572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000697 | supercontig | sc0000697:21458..23572 + |
Blast
The following BLAST results are available for this feature:
|
