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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028675 ID=TCONS_00028675|Name=TCONS_00028675|organism=Clytia hemisphaerica|type=transcript|length=1900bp
CAATCATATGGAACACCTTTATGGTTAGAATTCCACAAAGACAAAGTCTT
CAGAAAGAATAAAATCCGATTTAGCAAGTAATGGCAAAGCTATTGTTATT
GAGAAACCATCAAAAAAAGTCGAGGTAGCAGATTACACTACTGAAGGCAA
TATCAAATTAAGTGGACGCAAAGTTGATGATGAAAATGTTCAAATACGAA
ATTGGATAGATGACATTGAGTTATACACCATTGAATTACAACTCGAAGAA
GTCTATGACATAAatgtatttttgaattttacattGGATGATGAAACTGT
AAGTGTTGTTATTGAAGTTGACAATATTAAAGTGGTGCACTTTTTCAAGT
GTGTTTGGTCAGATGGTCAGATTTTATCCTTGGAGAAAATTCATTTTGTA
GATCTTTACAGTCTTGGTATGAAATTTATCAttgattcaaaattcaatga
TGCTGGAGATAAGATTGCTATTTCATCGCAGACTGGCAGTTTTCTTGTTT
ACTCTTTAAGAACTCAAGCTGTGTTACTTCTGGAAGAGGTGGCAGATTTT
AAGGACTTTTTTTGGTCAACTGAtgtaaaaaataatgaaatcttGGTTAA
TTTCTATAGGCAGGCTGGTTTAATTTGCGTTTTCAGCTTGAACTACAAGG
AAGGCAACTTAAACATTTTACAAGAGATAAATGTTTCGGACTTTCTTCAA
GATGTAGATCAGTGGGACAAATGTTTGTTGACAGTTTCTAGCGGTATCTC
TTTGGCTTTGCTAGGGTATAACCACATTGTATATTTCATTGATCTTACCA
CTGGATTGCTTGTCCATCAATTGAATTCGCAAGTTGTCACAAGCTGTGAT
GTCCAGAATATCATGTTGAACTGGTGTTCGAATGAAATTGTTACACTGTA
CAGGGATAAAGTTGCTGACGAATATTTTATCCAAGTTAATCCTTTGTTGT
ATGGTAATAGAGTGGTGGAATCACTTTTCAATACTGCATTGAAAACTGTC
TTGCTTAAATATTCCATCAGTGATTTGTTGCAAATGAATTTACCAGAAAG
tatcaaaacatattttaaGTGACAATGGATTACAATTCAAAgcgtaataa
aaattgggtttgAAAATTAAATCAAGAAATTAGATCATAAAGataatttt
aaggattttgatTTATAAGTTTTTCACAAATTTGTCGGATTGTTAGTCTG
TTAATCACATTGCCTGGGTCAACGATTTCTTCATATGATAGTAATGAGCN
TCGGATTGTTAGTCTGTTCATCACATTGCCTGGGTCAACGATTTCTTCAT
ATGATAGTAATGAACATATAGTGAgagcggaaaggggtctgatacCCCCT
CTTAAACGACCCCCCTTCTTGGCACCCCCCccctaacctttaaaaatgcc
tatccctaaggattttggacaaaaatagctaacaaatatatgtgaaatat
ctttagagagagaaagcgaaataataagcctctttcttctttttgactca
gacttactctaacagaaaacttcctttcatgaagaccaaatttcataaca
gtgcttgaaaataatctacaatatatatgtaagcccccccctttttaaac
tATTCCCCTTCCTTGCTACCCCTTCCTTGCTACCCCctgtttcatgaaaa
tttccgATCCttctcttctttattttttcgaaaGGTGTCATCCCTCCTTT
AGAAAGAGGGGGGATCCGAACTATGAATTAGTGTgacttcaatattttga
aaaggaaaaaccAATCAAACGGAGGAGGAAACAAATATCAAACAGGGGTT
ATTCAATCTCCGTGAAAtcttaaagttttatttttttctcttacatttta
ttttttttcttacaacTTAAAAAAGCACTTTTGAAAATGTCGAAAATGCC Run BLAST on NCBI protein sequence of TCONS_00028675-protein >TCONS_00028675-protein ID=TCONS_00028675-protein|Name=TCONS_00028675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MKFIIDSKFNDAGDKIAISSQTGSFLVYSLRTQAVLLLEEVADFKDFFWS
TDVKNNEILVNFYRQAGLICVFSLNYKEGNLNILQEINVSDFLQDVDQWD
KCLLTVSSGISLALLGYNHIVYFIDLTTGLLVHQLNSQVVTSCDVQNIML
NWCSNEIVTLYRDKVADEYFIQVNPLLYGNRVVESLFNTALKTVLLKYSI
SDLLQMNLPESIKTYFK Run BLAST on NCBI transcript from alignment at sc0000697:21535..23572+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028675 ID=TCONS_00028675|Name=TCONS_00028675|organism=Clytia hemisphaerica|type=transcript|length=2038bp|location=Sequence derived from alignment at sc0000697:21535..23572+ (Clytia hemisphaerica)
CAATCATATGGAACACCTTTATGGTTAGAATTCCACAAAGACAAAGTCTT
CAGAAAGAATAAAATCCGATTTAGCAAGTAATGGCAAAGCTATTGTTATT
GAGAAACCATCAAAAAAAGTCGAGGGTGAGGTTTTCTTTGAATGTCCACT
TTTATTCTACACACTTCAACACTCGGAATTGTCACTGATGTCCAGCCAGA
AATTCTGGTTTagttatttttcattctctTATACTCTGAGTAATAGTTTT
CAATATGGTTTAGTAGCAGATTACACTACTGAAGGCAATATCAAATTAAG
TGGACGCAAAGTTGATGATGAAAATGTTCAAATACGAAATTGGATAGATG
ACATTGAGTTATACACCATTGAATTACAACTCGAAGAAGTCTATGACATA
AatgtatttttgaattttacattGGATGATGAAACTGTAAGTGTTGTTAT
TGAAGTTGACAATATTAAAGTGGTGCACTTTTTCAAGTGTGTTTGGTCAG
ATGGTCAGATTTTATCCTTGGAGAAAATTCATTTTGTAGATCTTTACAGT
CTTGGTATGAAATTTATCAttgattcaaaattcaatgaTGCTGGAGATAA
GATTGCTATTTCATCGCAGACTGGCAGTTTTCTTGTTTACTCTTTAAGAA
CTCAAGCTGTGTTACTTCTGGAAGAGGTGGCAGATTTTAAGGACTTTTTT
TGGTCAACTGAtgtaaaaaataatgaaatcttGGTTAATTTCTATAGGCA
GGCTGGTTTAATTTGCGTTTTCAGCTTGAACTACAAGGAAGGCAACTTAA
ACATTTTACAAGAGATAAATGTTTCGGACTTTCTTCAAGATGTAGATCAG
TGGGACAAATGTTTGTTGACAGTTTCTAGCGGTATCTCTTTGGCTTTGCT
AGGGTATAACCACATTGTATATTTCATTGATCTTACCACTGGATTGCTTG
TCCATCAATTGAATTCGCAAGTTGTCACAAGCTGTGATGTCCAGAATATC
ATGTTGAACTGGTGTTCGAATGAAATTGTTACACTGTACAGGGATAAAGT
TGCTGACGAATATTTTATCCAAGTTAATCCTTTGTTGTATGGTAATAGAG
TGGTGGAATCACTTTTCAATACTGCATTGAAAACTGTCTTGCTTAAATAT
TCCATCAGTGATTTGTTGCAAATGAATTTACCAGAAAGtatcaaaacata
ttttaaGTGACAATGGATTACAATTCAAAgcgtaataaaaattgggtttg
AAAATTAAATCAAGAAATTAGATCATAAAGataattttaaggattttgat
TTATAAGTTTTTCACAAATTTGTCGGATTGTTAGTCTGTTAATCACATTG
CCTGGGTCAACGATTTCTTCATATGATAGTAATGAGCNTCGGATTGTTAG
TCTGTTCATCACATTGCCTGGGTCAACGATTTCTTCATATGATAGTAATG
AACATATAGTGAgagcggaaaggggtctgatacCCCCTCTTAAACGACCC
CCCTTCTTGGCACCCCCCccctaacctttaaaaatgcctatccctaagga
ttttggacaaaaatagctaacaaatatatgtgaaatatctttagagagag
aaagcgaaataataagcctctttcttctttttgactcagacttactctaa
cagaaaacttcctttcatgaagaccaaatttcataacagtgcttgaaaat
aatctacaatatatatgtaagcccccccctttttaaactATTCCCCTTCC
TTGCTACCCCTTCCTTGCTACCCCctgtttcatgaaaatttccgATCCtt
ctcttctttattttttcgaaaGGTGTCATCCCTCCTTTAGAAAGAGGGGG
GATCCGAACTATGAATTAGTGTgacttcaatattttgaaaaggaaaaacc
AATCAAACGGAGGAGGAAACAAATATCAAACAGGGGTTATTCAATCTCCG
TGAAAtcttaaagttttatttttttctcttacattttattttttttctta
caacTTAAAAAAGCACTTTTGAAAATGTCGAAAATGCC Coding sequence (CDS) from alignment at sc0000697:21535..23572+ >TCONS_00028675 ID=TCONS_00028675|Name=TCONS_00028675|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0000697:21535..23572+ (Clytia hemisphaerica)
ATGAAATTTATCAttgattcaaaattcaatgaTGCTGGAGATAAGATTGC
TATTTCATCGCAGACTGGCAGTTTTCTTGTTTACTCTTTAAGAACTCAAG
CTGTGTTACTTCTGGAAGAGGTGGCAGATTTTAAGGACTTTTTTTGGTCA
ACTGAtgtaaaaaataatgaaatcttGGTTAATTTCTATAGGCAGGCTGG
TTTAATTTGCGTTTTCAGCTTGAACTACAAGGAAGGCAACTTAAACATTT
TACAAGAGATAAATGTTTCGGACTTTCTTCAAGATGTAGATCAGTGGGAC
AAATGTTTGTTGACAGTTTCTAGCGGTATCTCTTTGGCTTTGCTAGGGTA
TAACCACATTGTATATTTCATTGATCTTACCACTGGATTGCTTGTCCATC
AATTGAATTCGCAAGTTGTCACAAGCTGTGATGTCCAGAATATCATGTTG
AACTGGTGTTCGAATGAAATTGTTACACTGTACAGGGATAAAGTTGCTGA
CGAATATTTTATCCAAGTTAATCCTTTGTTGTATGGTAATAGAGTGGTGG
AATCACTTTTCAATACTGCATTGAAAACTGTCTTGCTTAAATATTCCATC
AGTGATTTGTTGCAAATGAATTTACCAGAAAGtatcaaaacatattttaa
GTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028675-exon-sc0000697-1491911889:21535..21659 | TCONS_00028675-exon-sc0000697-1491911889:21535..21659 | Clytia hemisphaerica | exon |
| TCONS_00028675-exon-sc0000697-1510915933:21535..21659 | TCONS_00028675-exon-sc0000697-1510915933:21535..21659 | Clytia hemisphaerica | exon |
| TCONS_00028675-exon-sc0000697-1575043694:21535..21659 | TCONS_00028675-exon-sc0000697-1575043694:21535..21659 | Clytia hemisphaerica | exon |
| TCONS_00028675-exon-sc0000697-1491911889:21798..23572 | TCONS_00028675-exon-sc0000697-1491911889:21798..23572 | Clytia hemisphaerica | exon |
| TCONS_00028675-exon-sc0000697-1510915933:21798..23572 | TCONS_00028675-exon-sc0000697-1510915933:21798..23572 | Clytia hemisphaerica | exon |
| TCONS_00028675-exon-sc0000697-1575043694:21798..23572 | TCONS_00028675-exon-sc0000697-1575043694:21798..23572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000697 | supercontig | sc0000697:21535..23572 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
| IPR017986 | WD40_repeat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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