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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028692 ID=TCONS_00028692|Name=TCONS_00028692|organism=Clytia hemisphaerica|type=transcript|length=947bp
CACAAAGTCTTCCTTCTCGATTTAGATTGCAAGTTGTTGGAGATTTGCAA
TGTTTTGTAGTTGATGAACAACAGTATATTTCGGGACATAAAAGGAATTG
GTAATCCGCTGTTTTATTTTCATAGAAGCCATGGAAATTGTCACGTGCTA
TTAAATCGTTATCTGGACAGCGAGAACCTGTTGGGCAGATTTTACATGTT
GCTTTTTTAATTTGTGCAATTTTGCTGAGTTTAATGGCATTTGTTTTACT
TGCCAATTTGCTCatactttccaaaaaagttatacattgaGTATTGAGCT
GATGGACATCTGTTGCAAACAATTTCTGTCGATGATTTAAGTCTTTTAAT
TTGAGGGGTGAAATGATTTCCGCATACAGTTGAAAAGCTTTTGATTTGCC
CATgatgttttccaaacattttccaaaCTTTGAGTTCCACGGACAATGAT
TTCGGTAGCACAATGTCaacttttgtaaaataaatGGTGCTACGCTTTGA
ATTTATTATTTGGCTACCTTTATCAAAGGAATTCAATGTATACATACTGT
TCGTCAAATataattctgaaaattcaacGTCGAAGACAGCTATTTTGCCT
TCAGTATTATCATGAACTGATTTGAAATTCGTGATTTTGAAATATGATGA
TTGAATTCTCATCAAAGTTAAAAAGGTATTTCCATGTGTGGTGAAATTTT
CGCATGTAGCACTTTCGACTCTATTCATTTGAATTGCATAATCTGGAGTG
GTATTGTTTATTAAACTAAATCCTCGAAGTTTAACAGTAGATTTTTCAAC
ATCCAATATGCTTTTATCTATATaactgtttttaatttcaattccTTCCA
AAGAAATATCTGCATTTTTTAGATTGAAGACATTTTTCGTCAGACGGCTA
TCATAAAGCCTGAAATCCGAAACAGTGAGGTTACTTTTGAGAAACTC Run BLAST on NCBI protein sequence of TCONS_00028692-protein >TCONS_00028692-protein ID=TCONS_00028692-protein|Name=TCONS_00028692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
EFLKSNLTVSDFRLYDSRLTKNVFNLKNADISLEGIEIKNSYIDKSILDV
EKSTVKLRGFSLINNTTPDYAIQMNRVESATCENFTTHGNTFLTLMRIQS
SYFKITNFKSVHDNTEGKIAVFDVEFSELYLTNSMYTLNSFDKGSQIINS
KRSTIYFTKVDIVLPKSLSVELKVWKMFGKHHGQIKSFSTVCGNHFTPQI
KRLKSSTEIVCNRCPSAQYSMYNFFGKYEQIGK Run BLAST on NCBI transcript from alignment at sc0000697:123824..124770 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028692 ID=TCONS_00028692|Name=TCONS_00028692|organism=Clytia hemisphaerica|type=transcript|length=947bp|location=Sequence derived from alignment at sc0000697:123824..124770 (Clytia hemisphaerica)
GAGTTTCTCAAAAGTAACCTCACTGTTTCGGATTTCAGGCTTTATGATAG
CCGTCTGACGAAAAATGTCTTCAATCTAAAAAATGCAGATATTTCTTTGG
AAggaattgaaattaaaaacagttATATAGATAAAAGCATATTGGATGTT
GAAAAATCTACTGTTAAACTTCGAGGATTTAGTTTAATAAACAATACCAC
TCCAGATTATGCAATTCAAATGAATAGAGTCGAAAGTGCTACATGCGAAA
ATTTCACCACACATGGAAATACCTTTTTAACTTTGATGAGAATTCAATCA
TCATATTTCAAAATCACGAATTTCAAATCAGTTCATGATAATACTGAAGG
CAAAATAGCTGTCTTCGACgttgaattttcagaattatATTTGACGAACA
GTATGTATACATTGAATTCCTTTGATAAAGGTAGCCAAATAATAAATTCA
AAGCGTAGCACCatttattttacaaaagttGACATTGTGCTACCGAAATC
ATTGTCCGTGGAACTCAAAGtttggaaaatgtttggaaaacatcATGGGC
AAATCAAAAGCTTTTCAACTGTATGCGGAAATCATTTCACCCCTCAAATT
AAAAGACTTAAATCATCGACAGAAATTGTTTGCAACAGATGTCCATCAGC
TCAATACtcaatgtataacttttttggaaagtatGAGCAAATTGGCAAGT
AAAACAAATGCCATTAAACTCAGCAAAATTGCACAAATTAAAAAAGCAAC
ATGTAAAATCTGCCCAACAGGTTCTCGCTGTCCAGATAACGATTTAATAG
CACGTGACAATTTCCATGGCTTCTATGAAAATAAAACAGCGGATTACCAA
TTCCTTTTATGTCCCGAAATATACTGTTGTTCATCAACTACAAAACATTG
CAAATCTCCAACAACTTGCAATCTAAATCGAGAAGGAAGACTTTGTG Coding sequence (CDS) from alignment at sc0000697:123824..124770 >TCONS_00028692 ID=TCONS_00028692|Name=TCONS_00028692|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000697:123824..124770 (Clytia hemisphaerica)
GAGTTTCTCAAAAGTAACCTCACTGTTTCGGATTTCAGGCTTTATGATAG
CCGTCTGACGAAAAATGTCTTCAATCTAAAAAATGCAGATATTTCTTTGG
AAggaattgaaattaaaaacagttATATAGATAAAAGCATATTGGATGTT
GAAAAATCTACTGTTAAACTTCGAGGATTTAGTTTAATAAACAATACCAC
TCCAGATTATGCAATTCAAATGAATAGAGTCGAAAGTGCTACATGCGAAA
ATTTCACCACACATGGAAATACCTTTTTAACTTTGATGAGAATTCAATCA
TCATATTTCAAAATCACGAATTTCAAATCAGTTCATGATAATACTGAAGG
CAAAATAGCTGTCTTCGACgttgaattttcagaattatATTTGACGAACA
GTATGTATACATTGAATTCCTTTGATAAAGGTAGCCAAATAATAAATTCA
AAGCGTAGCACCatttattttacaaaagttGACATTGTGCTACCGAAATC
ATTGTCCGTGGAACTCAAAGtttggaaaatgtttggaaaacatcATGGGC
AAATCAAAAGCTTTTCAACTGTATGCGGAAATCATTTCACCCCTCAAATT
AAAAGACTTAAATCATCGACAGAAATTGTTTGCAACAGATGTCCATCAGC
TCAATACtcaatgtataacttttttggaaagtatGAGCAAATTGGCAAGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028692-exon-sc0000697-1491911889:123824..124770 | TCONS_00028692-exon-sc0000697-1491911889:123824..124770 | Clytia hemisphaerica | exon |
| TCONS_00028692-exon-sc0000697-1510915933:123824..124770 | TCONS_00028692-exon-sc0000697-1510915933:123824..124770 | Clytia hemisphaerica | exon |
| TCONS_00028692-exon-sc0000697-1575043694:123824..124770 | TCONS_00028692-exon-sc0000697-1575043694:123824..124770 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000697 | supercontig | sc0000697:123824..124770 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012332 | P22_tailspike_C-like |
| IPR011050 | Pectin_lyase_fold/virulence |
Blast
The following BLAST results are available for this feature:
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