TCONS_00028697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028697
Unique NameTCONS_00028697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028697 ID=TCONS_00028697|Name=TCONS_00028697|organism=Clytia hemisphaerica|type=transcript|length=893bp
cttaaaatcttgaatttttatcATATTCAATTGTAACTAAAATTGAGGCG
CAAGTTCTTATGCCATCAGTACCTGTTATAAGAATACAAGGTCCAATCTT
TTCATTTATCTTCTCCTCCAATAGCCTCTTATAAATTGCTTCCTTTTCAA
TAATGAGTACAAATTTGGCATTTGATTCCAAAGTATTCAGTCCATCAACA
TAACATGGTACTTGCACTCCTTCATTGACATTACAATTAACTATATTTTC
TTCTGCAtctttaaatgataaatttccCCCAACAAAACCTTTTGAAGAGG
ATAAAACATTGAGAGAATGTCTCGGAATGCACAACATACATGAAATATCA
GAGATTGCTTCATCAACCACACGTtgggttttaaaaaaattgacattgga
ATAATAAATATCCCGTTTAGTAGCATGTTTTCCACTTTGAATCAAAGAGT
AAACCGTTTGTAAACAGCTCATCATCACAGCATACTTTTTAACTGAGCTC
TCATTCTCCAAGGATACTTCTTGTAGTGCAACATCATTTACCATTTGCAT
CCCTCTTTCATTGCTATAGGTTGTGTTACTAAAAGAGCCTCTTTTgttaa
ataaaaactttggtAATGTATCATTTGCAATGCATTCTAAGAATTGTATG
ATTATCTCTTCTATTTTTTGAAGAACTtcttctttgtttatttttgttgc
tGCAAATATTGCAGCTTCGTTTGAGGTCCcttgtttctcttttattcttt
gtaaaagaTTGTATGCGTTCTCATTTGACTTCAATTCATCTTCAAGCTCT
TGAAGTTTATACCAAAATTCCAACCCATACatttttcaattggaaatttt
gatttgattctcagCTTTTGCAACAAAGACAAAAGTCTTGCTC
Run BLAST on NCBI

transcript from alignment at sc0000698:38879..40051+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028697 ID=TCONS_00028697|Name=TCONS_00028697|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at sc0000698:38879..40051+ (Clytia hemisphaerica)
cttaaaatcttgaatttttatcATATTCAATTGTAACTAAAATTGAGGCG
CAAGTTCTTATGCCATCAGTACCTGTTATAAGAATACAAGGTCCAATCTT
TTCATTTATCTTCTCCTCCAATAGCCTCTTATAAATTGCTTCCTTTTCAA
TAATGAGTACAAATTTGGCATTTGATTCCAAAGTATTCAGTCCATCAACA
TAACATGGTACTTGCACTCCTTCATTGACATTACAATTAACTATATTTTC
TTCTGCAtctttaaatgataaatttccCCCAACAAAACCTTTTGAAGAGG
ATAAAACATTGAGAGAATGTCTCGGAATGCACAACATACATGAAATATCA
GAGATTGCTTCATCAACCACACGTtgggttttaaaaaaattgacattgGA
ATAATAAATATCCCGTTTAGTAGCATGTTTTCCACTTTGAATCAAAGAGT
AAATCGTNAAAATTATTCAGTCCATCAACATAACATGGTACTTGCACTCC
TTCATTGACATTACaattaacaatatttttttctgcatctttgaatgata
aatttccCCCAACAAAACCTTTGGAAGAAGATAAAACATTGAGAGAATGT
CTCGGAATGCACAACATGCATGAAATATCAGAGATTGCTTCATCAACCAC
ACGttgggttttgaaaaaattaacattggaATAATAAATATCCCGTTTAG
TAGCATGTTTTCCACTTTGAATCAAAGAGTAAACCGTTTGTAAACAGCTC
ATCATCACAGCATACTTTTTAACTGAGCTCTCATTCTCCAAGGATACTTC
TTGTAGTGCAACATCATTTACCATTTGCATCCCTCTTTCATTGCTATAGG
TTGTGTTACTAAAAGAGCCTCTTTTgttaaataaaaactttggtAATGTA
TCATTTGCAATGCATTCTAAGAATTGTATGATTATCTCTTCTATTTTTTG
AAGAACTtcttctttgtttatttttgttgctGCAAATATTGCAGCTTCGT
TTGAGGTCCcttgtttctcttttattctttgtaaaagaTTGTATGCGTTC
TCATTTGACTTCAATTCATCTTCAAGCTCTTGAAGTTTATACCAAAATTC
CAACCCATACatttttcaattggaaattttgatttgattctcagCTTTTG
CAACAAAGACAAAAGTCTTGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016280XLOC_016280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028697-exon-sc0000698-1491911889:38879..39272TCONS_00028697-exon-sc0000698-1491911889:38879..39272Clytia hemisphaericaexon
TCONS_00028697-exon-sc0000698-1510915933:38879..39272TCONS_00028697-exon-sc0000698-1510915933:38879..39272Clytia hemisphaericaexon
TCONS_00028697-exon-sc0000698-1575043694:38879..39272TCONS_00028697-exon-sc0000698-1575043694:38879..39272Clytia hemisphaericaexon
TCONS_00028697-exon-sc0000698-1491911889:39553..40051TCONS_00028697-exon-sc0000698-1491911889:39553..40051Clytia hemisphaericaexon
TCONS_00028697-exon-sc0000698-1510915933:39553..40051TCONS_00028697-exon-sc0000698-1510915933:39553..40051Clytia hemisphaericaexon
TCONS_00028697-exon-sc0000698-1575043694:39553..40051TCONS_00028697-exon-sc0000698-1575043694:39553..40051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000698supercontigsc0000698:38879..40051 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.176183	0.114912	0	0	0.133369	0	0	0	0	0	0	0	0	0	0	0	0	0	0.56451	0.331054	0.118942	0	3.28121	2.59907	0.0711214	0	0.115139	0.0586542
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013048Meiotic_Spo11
IPR002815Spo11/TopoVI_A
IPR011991WHTH_DNA-bd_dom
IPR013049Spo11/TopoVI_A_N
Vocabulary: Biological Process
TermDefinition
GO:0000737DNA catabolic process, endonucleolytic
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000737 DNA catabolic process, endonucleolytic
biological_process GO:0006259 DNA metabolic process
cellular_component GO:0005694 chromosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
Blast
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BLAST of TCONS_00028697 vs. Swiss-Prot (Human)
Match: SPO11 (Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.946e-49
Identity = 82/204 (40.20%), Postives = 128/204 (62.75%), Query Frame = -2 
Query:   71 EVLQKIEEIIIQFLECIANDTLPKFLFNKRGSFSNTTYSNERGMQMVNDVALQEVSLENESSVKKYAVMMSCLQTVYSLIQSGKHATKRDIYYSNVNFFKTQRVVDEAISDISCMLCIPRHSLNVLSSSKGFVGGNLSFKDAEENIVNCNVNE-GVQVPCYVDGLNTLESNAKFVLIIEKEAIYKRLLEEKINEKIGPCILITG 679
            EVL  IE II   +  +A +  P F  + R S+ N  + +  G+QMV+    +++  ++  S +K+++++  L  +Y L+QS  +ATKRDIYY++   F  Q VVD  I+DISCML + R SL++LS+SKG + GNL + + +   VNC      V VP  + G+  L ++AKFVLI+EK+A ++RLL++    K+ PCI+ITG
Sbjct:   46 EVLASIENIIQDIITSLARNEAPAFTIDNRSSWENIKFEDSVGLQMVSHCTTRKIKSDSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLKVSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCTCGATAVAVPSNIQGIRNLVTDAKFVLIVEKDATFQRLLDDNFCNKLSPCIMITG 249
The following BLAST results are available for this feature:
BLAST of TCONS_00028697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPO113.946e-4940.20Meiotic recombination protein SPO11 OS=Homo sapien... [more]
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