TCONS_00028714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028714
Unique NameTCONS_00028714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028714 ID=TCONS_00028714|Name=TCONS_00028714|organism=Clytia hemisphaerica|type=transcript|length=236bp
AACTACAATAATAATGTCcacactttttcttttaaaaacatgaaaccATC
CAAGCCTCACAAAGGGGGAGAATAAAACAACgtgttgtttttgatttttt
gaagaaatatacatttttgatggaaacaTTTTAACATTCCCCAGGGTATT
AACTATTAGGTCGGGGGGCACTGACCAGGGTATCAAGCAAATGAATTCTT
GGCAGTGTCACATTGTTTTAACTCATAGCTAGGGAt
Run BLAST on NCBI

transcript from alignment at sc0000698:167626..167861

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028714 ID=TCONS_00028714|Name=TCONS_00028714|organism=Clytia hemisphaerica|type=transcript|length=236bp|location=Sequence derived from alignment at sc0000698:167626..167861 (Clytia hemisphaerica)
aTCCCTAGCTATGAGTTAAAACAATGTGACACTGCCAAGAATTCATTTGC
TTGATACCCTGGTCAGTGCCCCCCGACCTAATAGTTAATACCCTGGGGAA
TGTTAAAAtgtttccatcaaaaatgtatatttcttcaaaaaatcaaaaac
aacacGTTGTTTTATTCTCCCCCTTTGTGAGGCTTGGATggtttcatgtt
tttaaaagaaaaagtgtgGACATTATTATTGTAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016290XLOC_016290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028714-exon-sc0000698-1491911889:167626..167861TCONS_00028714-exon-sc0000698-1491911889:167626..167861Clytia hemisphaericaexon
TCONS_00028714-exon-sc0000698-1510915933:167626..167861TCONS_00028714-exon-sc0000698-1510915933:167626..167861Clytia hemisphaericaexon
TCONS_00028714-exon-sc0000698-1575043694:167626..167861TCONS_00028714-exon-sc0000698-1575043694:167626..167861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000698supercontigsc0000698:167626..167861 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.06261	6.4681	5.11118	3.69985	5.77293	0.808352	2.00255	4.85931	3.19432	10.4156	8.19898	7.4434	3.9457	11.9387	2.95238	19.3746	13.3058	15.767	5.42865	4.39949	9.99943	0	1.83835	2.63068	5.61506	2.66177	1.08477
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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