TCONS_00028734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028734
Unique NameTCONS_00028734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028734 ID=TCONS_00028734|Name=TCONS_00028734|organism=Clytia hemisphaerica|type=transcript|length=801bp
ACAATAGAGTACTAAACGATGATGTAATATTCCATTTTCTTACAACTTTT
TTATTGACAAGTTGGAGTAGTATAGTTCTGATAAACACAATACTGTCATT
AACGGCTGTTCTTTTCCAAGAGGGAAAGAAATTCTGATTGTCGGAAAAGT
TTGACATGTCAGATAATAAAACGAAGGTTTAGCCTCATTTTGATGTCATT
TACTTTTTTGATTGAGATTCAAAACATTAAAACTGTGTCTAGACTATATT
AAAACCAGCTctctaaaatcacttaaaatacTGGACTAAAGAaacattat
tttgtttttccgTTGTCAGAAataagaataaagaaaaaagatttcacaAT
TTGATCCACTCCCTGACTCTAGTGGATTCAACGCTATCAAAAAGTAAACT
AAAAAGGGAGAAGAAAAGTTTGGTTTTAAGAAATTAAGGAAAACAGTGAG
TGAACTTAATGAGATAAAAAAaccagctcaaaaattccatttcaaaataa
aaaaactagtaACAGGATCTGATAGGatatcaaaaattataaattacaTT
GAAATTCTTAATGATTACTAATTACTAtatagaaataaaaaagaagaaca
aaatattgtgcataaaataaaacaataaaaaaatattatgaaaaaagggg
aaaataaATCTTGAATCCtcataaaatgaagaaaaaagaaaaaagatata
aaaatataGACGAAAACATAAGAAAGATGAAATATGTTCCTTTTCTTAAA
AACAATGTTAGAAATCTACCAGTTTACACatacaaggaaaaaaaatcaga
g
Run BLAST on NCBI

transcript from alignment at sc0000700:60439..61239

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028734 ID=TCONS_00028734|Name=TCONS_00028734|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0000700:60439..61239 (Clytia hemisphaerica)
ctctgattttttttccttgtatGTGTAAACTGGTAGATTTCTAACATTGT
TTTTAAGAAAAGGAACATATTTCATCTTTCTTATGTTTTCGTCtatattt
ttatatcttttttcttttttcttcattttatgaGGATTCAAGATttattt
tccccttttttcataatatttttttattgttttattttatgcacaatatt
ttgttcttcttttttatttctataTAGTAATTAGTAATCATTAAGAATTT
CAAtgtaatttataatttttgatatCCTATCAGATCCTGTtactagtttt
tttattttgaaatggaatttttgagctggtTTTTTTATCTCATTAAGTTC
ACTCACTGTTTTCCTTAATTTCTTAAAACCAAACTTTTCTTCTCCCTTTT
TAGTTTACTTTTTGATAGCGTTGAATCCACTAGAGTCAGGGAGTGGATCA
AATtgtgaaatcttttttctttattcttatTTCTGACAAcggaaaaacaa
aataatgttTCTTTAGTCCAgtattttaagtgattttagagAGCTGGTTT
TAATATAGTCTAGACACAGTTTTAATGTTTTGAATCTCAATCAAAAAAGT
AAATGACATCAAAATGAGGCTAAACCTTCGTTTTATTATCTGACATGTCA
AACTTTTCCGACAATCAGAATTTCTTTCCCTCTTGGAAAAGAACAGCCGT
TAATGACAGTATTGTGTTTATCAGAACTATACTACTCCAACTTGTCAATA
AAAAAGTTGTAAGAAAATGGAATATTACATCATCGTTTAGTACTCTATTG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016297XLOC_016297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028734-exon-sc0000700-1491911889:60439..61239TCONS_00028734-exon-sc0000700-1491911889:60439..61239Clytia hemisphaericaexon
TCONS_00028734-exon-sc0000700-1510915933:60439..61239TCONS_00028734-exon-sc0000700-1510915933:60439..61239Clytia hemisphaericaexon
TCONS_00028734-exon-sc0000700-1575043694:60439..61239TCONS_00028734-exon-sc0000700-1575043694:60439..61239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000700supercontigsc0000700:60439..61239 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0599286	0.0584398	0	0.0663848	0.0808171	0	0.154095	0.0721311	0.0505007	0.0625533	0.242863	0.917979	0.23914	0.455307	0.306265	0.255632	0.0899764	0	0.127411	0.599968	0.115885	0	0.068713	0	0	0	0.164348	0.263095	0.0665161	0.135539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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