TCONS_00028738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028738
Unique NameTCONS_00028738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028738 ID=TCONS_00028738|Name=TCONS_00028738|organism=Clytia hemisphaerica|type=transcript|length=472bp
taacctttccagcgcgcaactttttaaattttcacgctgtcagcgcgcaa
cattttttcagaaaatagacatgttcagttatttgATCATNAAAAACCGT
AAGCCTTTTGAGGCAAACTCATTGCTATCAAATCTGGTCTCTTTTGCCCA
TAAGGAATGCTAAATGTCAtcataataattccatgtgGCTATTATGTGGT
TCCTGCCATCATTTTGATCCATATAAGCTGTAACCAGGACATTGTTATGA
GCCAAGAATTTCGGGGATCGATCGACCGCTGCTGGTGGAGCGGAAGAAGT
AGTGCAATTCAACATAAATCCaggcttttcaaattctttggtgCTCCTTT
GAAATAAATGAGGTGTAGGTGCTCCAACctgaataaaaagtaaaaagtac
tgTAAGTTTGGGTCGACTCCGATGGTTTGTCgagaaaagtggtcaaaatg
acaaataaatggaatttttatg
Run BLAST on NCBI

protein sequence of TCONS_00028738-protein

>TCONS_00028738-protein ID=TCONS_00028738-protein|Name=TCONS_00028738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
IKIPFICHFDHFSRQTIGVDPNLQYFLLFIQVGAPTPHLFQRSTKEFEKP
GFMLNCTTSSAPPAAVDRSPKFLAHNNVLVTAYMDQNDGRNHIIATWNYY
DDI
Run BLAST on NCBI

transcript from alignment at sc0000700:147116..147587

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028738 ID=TCONS_00028738|Name=TCONS_00028738|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0000700:147116..147587 (Clytia hemisphaerica)
cataaaaattccatttatttgtcattttgaccacttttctcGACAAACCA
TCGGAGTCGACCCAAACTTAcagtactttttactttttattcagGTTGGA
GCACCTACACCTCATTTATTTCAAAGGAGcaccaaagaatttgaaaagcc
tGGATTTATGTTGAATTGCACTACTTCTTCCGCTCCACCAGCAGCGGTCG
ATCGATCCCCGAAATTCTTGGCTCATAACAATGTCCTGGTTACAGCTTAT
ATGGATCAAAATGATGGCAGGAACCACATAATAGCcacatggaattatta
tgaTGACATTTAGCATTCCTTATGGGCAAAAGAGACCAGATTTGATAGCA
ATGAGTTTGCCTCAAAAGGCTTACGGTTTTTNATGATcaaataactgaac
atgtctattttctgaaaaaatgttgcgcgctgacagcgtgaaaatttaaa
aagttgcgcgctggaaaggtta

Coding sequence (CDS) from alignment at sc0000700:147116..147587

>TCONS_00028738 ID=TCONS_00028738|Name=TCONS_00028738|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000700:147116..147587 (Clytia hemisphaerica)
ataaaaattccatttatttgtcattttgaccacttttctcGACAAACCAT
CGGAGTCGACCCAAACTTAcagtactttttactttttattcagGTTGGAG
CACCTACACCTCATTTATTTCAAAGGAGcaccaaagaatttgaaaagcct
GGATTTATGTTGAATTGCACTACTTCTTCCGCTCCACCAGCAGCGGTCGA
TCGATCCCCGAAATTCTTGGCTCATAACAATGTCCTGGTTACAGCTTATA
TGGATCAAAATGATGGCAGGAACCACATAATAGCcacatggaattattat
gaTGACATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016301XLOC_016301Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028738-proteinTCONS_00028738-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028738-exon-sc0000700-1491911889:147116..147587TCONS_00028738-exon-sc0000700-1491911889:147116..147587Clytia hemisphaericaexon
TCONS_00028738-exon-sc0000700-1510915933:147116..147587TCONS_00028738-exon-sc0000700-1510915933:147116..147587Clytia hemisphaericaexon
TCONS_00028738-exon-sc0000700-1575043694:147116..147587TCONS_00028738-exon-sc0000700-1575043694:147116..147587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000700supercontigsc0000700:147116..147587 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.20133	0.608071	1.57251	2.40367	1.60422	1.25011	2.08531	2.73409	1.44469	3.66804	1.18518	1.48747	3.19764	3.41511	1.83308	2.47521	1.12707	1.62565	3.36136	4.24969	3.21513	2.19985	3.193	2.52967	1.39826	1.28683	13.6541	13.9483	9.60278	12.8929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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