TCONS_00028751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028751
Unique NameTCONS_00028751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028751 ID=TCONS_00028751|Name=TCONS_00028751|organism=Clytia hemisphaerica|type=transcript|length=1270bp
ctttactttcagtgacattttaaaaaagaaaagaaaaaattcaaaattac
agAATTATGAAAGAATTAATATTTCAAGTCCCCATATCTGAAAAGGCCGT
CAACGTTCGAACGCTTTCATTAGACAACGCTGTCATGATTTGGGTAGGTG
AGACTAACGAATTCGATAAATTAAACATTGCCTCGATAAGTCAAGACAtg
aagatgacgtcatcggttgatttgattggtcaaaGTTCATTGACAATGAG
TCAAAAATTGTGCAAAAGATTGAAAAAGCAAGTGCTTCTAAGCTATAATG
TGGCGGAGGAGAATCTGTCGGAAGCTAGTCTAACTGAAGACTTGATTATG
AAAGGTATTATCAATCGATTGGCTGCGGATCAAGGCTAGATGGTGGAATC
AAAATGTTTGGAGTAGAGTCTAGCGgtgaaaaaattcttccaaTATGCTG
CTGTTGTTGAAATGAAGTCCATATTGTATGAGAATACCCCTTTCTACATT
ATCCCTTAGGACCAAGATATATTTTACATGAAACAAGCTCTCAAGCTCTC
CAAAGAAACTCTTGAAAGACGTGAAGTCCCTATCGCCTGTCTTATTGTTT
ACAAGAATAACGTCATTGCTCGTGGCTCTAACGACGTCAACCGTACGAAA
AACGCTACACGGCACGCTGAGCTTTTGGCGATCGAAGAGGTACGTGAATA
TGCAAAAACGGAATCACTAGACGTGACGCAAGTTTTTAAAGACTCTACTT
TATACGTGACAACGGAGCCTTGTGTTATGTGCGCGGCCGCTTTAAGGCTA
GTCGGTTTAACAAACGTTGTATACGGATGTGGGAATCAACGTTTTGGAGG
TTGCGGATCAAGGCTAGATGCTCATTCGAGGATGCCTAGGAACAATACTA
CAGAAGAAGTACCACCTGTTGCGAAACGATTAAAAATGGACGCTCTATCT
GGTAGTTGCTTGATTGCTATGGGTGATCCTTTAGTTTGTCGGACAGGCAT
AATGGCGGATGAAGCTGTGAATATGTTGAAATTATTTTACGCCGGTGAGA
ATCCAAACGCGCCGAACCCGAAAGATAAGAGTGGGCGAATGGAAGCATTA
AGGAAAGAAAAAGAGAGTTGAGGATGTAAGCTACGTGAGTGAAAAGGTCA
TGGGCTGAAGACTGGTagatcattgagtttcaagccgaaggctagaggtc
aatctccttggtaggatttgaagccaacaaatcctaccaaagttgcgcgg
ccttgagcgacccgcctggt
Run BLAST on NCBI

transcript from alignment at sc0000703:136296..138532+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028751 ID=TCONS_00028751|Name=TCONS_00028751|organism=Clytia hemisphaerica|type=transcript|length=2237bp|location=Sequence derived from alignment at sc0000703:136296..138532+ (Clytia hemisphaerica)
ctttactttcagtgacattttaaaaaagaaaagaaaaaattcaaaattac
agAATTATGAAAGAATTAATATTTCAAGTCCCCATATCTGAAAAGGCCGT
CAACGTTCGAACGCTTTCATTAGACAACGCTGTCATGATTTGGGTAGGTG
AGACTAACGAATTCGATAAATTAAACATTGCCTCGATAAGTCAAGACAtg
aagatgacgtcatcggttgatttgattggtcaaaGTTCATTGACAATGAG
TCAAAAATTGTGCAAAAGATTGAAAAAGCAAGTGCTTCTAAGCTATAATG
TGGCGGAGGAGAATCTGTCGGAAGCTAGTCTAACTGAAGACTTGATTATG
AAAGGTATTATCAATCGATTGGCTGCGGATCAAGGCTAGATGGTGGAATC
AAAATGTTTGGAGTAGAGTCTAGCGgtgaaaaaattcttccaaTATGCTG
CTGTTGTTGAAATGAAGTCCATATTGTATGAGAATACCCCTTTCTACATT
ATCCCTTGTAAATATTATCTCACTTTAGTTTTGGTGAGCTCGGGAAGAGT
AACAACACGTGTATAAATGGCGCAATTCAAGCTtaaatatttcagaattt
tcGTTTTTAGTATTCTTAAGATATGTGCAAATTTTCTGAAGTGAAAATTC
TCTAAAATTCTGAAAAGGGTTTCGTCATTCATTATGCAGCCACTTTAGTT
TTAAACTTTTCTTGCTAAGGTGATACTTGTTGCGACTAGCTCATCAATAT
TAGTTTGGTCACCGGTCGGTCAATTGTGGCTGTTTCAAGTTCCCGggggg
tatgtccgagccaaagttcgaaGATTTGACTGAATTAGACGTTTTGCGAC
CCTTTGGAAACCATTTTTCCAATTGTTATTGTTAATTTAtcgtttttgta
cccctttgaaaGACTTTCCAGGATTTACCCTTTATAGCTTTCACATACCC
GACAACCATCTTGCccaagtaccccctccccccccaaGACTAATGCATTC
CTTACTTCTGTTAGCAGTCATTTCTGACCGTCCCTTTTAATCCATATTTC
ACTCATTATTAGCTGCCTTTAATTCATATTTCGTGTACGTTATTGGATTT
AATTTTCGTGGatattaattttagcgtttttcgcgtgTTTTTTTGGCCAa
accgcgaaatacaattttttccaattttatcaataagtttgaaaaatccc
taggaagatgaaagaaatttgtctaaaaagggcaaaaaccgtgaaaatta
aaacccgcgaaatgcaatttttccgatttttttttcgaccggGAATATTA
gtttccgcaaaaattagttccaataagatAGGTTTTATAATTCATAGAAG
TGTATCTCTCAGGTCTATCTTACATCGTTTTATATTCTGTTGTAGATTTT
TTGAATAAAGATAAGGCGAAATAACAATATGAAAACTAACGAGAAAGGAA
CGTTACCAGTAAATTCCCTTATAGAGGACCAAGATATATTTTACATGAAA
CAAGCTCTCAAGCTCTCCAAAGAAACTCTTGAAAGACGTGAAGTCCCTAT
CGCCTGTCTTATTGTTTACAAGAATAACGTCATTGCTCGTGGCTCTAACG
ACGTCAACCGTACGAAAAACGCTACACGGCACGCTGAGCTTTTGGCGATC
GAAGAGGTACGTGAATATGCAAAAACGGAATCACTAGACGTGACGCAAGT
TTTTAAAGACTCTACTTTATACGTGACAACGGAGCCTTGTGTTATGTGCG
CGGCCGCTTTAAGGCTAGTCGGTTTAACAAACGTTGTATACGGATGTGGG
AATCAACGTTTTGGAGGTTGCGGATCAAGGCTAGATGCTCATTCGAGGAT
GCCTAGGAACAATACTACAGAAGAAGTACCACCTGTTGCGAAACGATTAA
AAATGGACGCTCTATCTGGTAGTTGCTTGATTGCTATGGGTGATCCTTTA
GTTTGTCGGACAGGCATAATGGCGGATGAAGCTGTGAATATGTTGAAATT
ATTTTACGCCGGTGAGAATCCAAACGCGCCGAACCCGAAAGATAAGAGTG
GGCGAATGGAAGCATTAAGGAAAGAAAAAGAGAGTTGAGGATGTAAGCTA
CGTGAGTGAAAAGGTCATGGGCTGAAGACTGGTagatcattgagtttcaa
gccgaaggctagaggtcaatctccttggtaggatttgaagccaacaaatc
ctaccaaagttgcgcggccttgagcgacccgcctggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016310XLOC_016310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028751-exon-sc0000703-1491911889:136296..136802TCONS_00028751-exon-sc0000703-1491911889:136296..136802Clytia hemisphaericaexon
TCONS_00028751-exon-sc0000703-1510915933:136296..136802TCONS_00028751-exon-sc0000703-1510915933:136296..136802Clytia hemisphaericaexon
TCONS_00028751-exon-sc0000703-1575043694:136296..136802TCONS_00028751-exon-sc0000703-1575043694:136296..136802Clytia hemisphaericaexon
TCONS_00028751-exon-sc0000703-1491911889:137770..138532TCONS_00028751-exon-sc0000703-1491911889:137770..138532Clytia hemisphaericaexon
TCONS_00028751-exon-sc0000703-1510915933:137770..138532TCONS_00028751-exon-sc0000703-1510915933:137770..138532Clytia hemisphaericaexon
TCONS_00028751-exon-sc0000703-1575043694:137770..138532TCONS_00028751-exon-sc0000703-1575043694:137770..138532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000703supercontigsc0000703:136296..138532 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.6233	45.7276	36.8705	35.7985	7.94452	4.83937	10.6247	12.4716	4.3059	6.91705	7.79568	6.69967	10.4621	6.10619	8.47972	9.4746	16.575	13.6159	8.9226	6.60235	10.0741	10.5679	18.839	17.7095	11.066	10.3256	6.17917	5.21518	8.60447	8.38062
Blast
[Close]
BLAST of TCONS_00028751 vs. Swiss-Prot (Human)
Match: ADAT2 (tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.440e-50
Identity = 86/184 (46.74%), Postives = 117/184 (63.59%), Query Frame = 3 
Query:  525 YMKQALKLSKETLERREVPIACLIVYKNNVIARGSNDVNRTKNATRHAELLAIEEVREYAKTESLDVTQVFKDSTLYVTTEPCVMCAAALRLVGLTNVVYGCGNQRFGGCGSRLD-AHSRMPRNNTTEEVPPVAKRLKMDALSGSCLIAMGDPLVCRTGIMADEAVNMLKLFYAGENPNAPNPK 1073
            +M++A+ ++KE LE  EVP+ CL+VY N V+ +G N+VN+TKNATRHAE++AI++V ++ +      ++VF+ + LYVT EPC+MCAAALRL+ +  VVYGC N+RFGGCGS L+ A + +P  NT                        G P  C  G  A+EAV MLK FY  ENPNAP  K
Sbjct:   25 WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLP--NT------------------------GRPFQCIPGYRAEEAVEMLKTFYKQENPNAPKSK 182
The following BLAST results are available for this feature:
BLAST of TCONS_00028751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADAT25.440e-5046.74tRNA-specific adenosine deaminase 2 OS=Homo sapien... [more]
back to top