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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028770 ID=TCONS_00028770|Name=TCONS_00028770|organism=Clytia hemisphaerica|type=transcript|length=2252bpRun BLAST on NCBI protein sequence of TCONS_00028770-protein >TCONS_00028770-protein ID=TCONS_00028770-protein|Name=TCONS_00028770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp MSLLSRTNNVIDIFEQFRHSLKAQGDYGHEKELADMIQMLDSPLFKQIVTRun BLAST on NCBI transcript from alignment at sc0000703:30444..50799- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028770 ID=TCONS_00028770|Name=TCONS_00028770|organism=Clytia hemisphaerica|type=transcript|length=20356bp|location=Sequence derived from alignment at sc0000703:30444..50799- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000703:30444..50799- >TCONS_00028770 ID=TCONS_00028770|Name=TCONS_00028770|organism=Clytia hemisphaerica|type=CDS|length=29700bp|location=Sequence derived from alignment at sc0000703:30444..50799- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028770 vs. Swiss-Prot (Human)
Match: MPDZ (Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2) HSP 1 Score: 371.703 bits (953), Expect = 2.399e-110 Identity = 241/648 (37.19%), Postives = 353/648 (54.48%), Query Frame = 2
Query: 239 NNVIDIFEQFRHSLKAQGDYGHEKELADMIQMLDSPLFKQIVTVQDSVQELGEKIH----NTDQVEIDDFDITATGDLSWFREGPEYGDDNDGGWAPDNSDKLIIDDGLRDSIYAADQEFLNGMMSASQGREIITIQLRKPPVGGLGFSVIGLQSETRGELGIFVQALQPGGIAEIDGRLSESDQILAINGQRVDAVMSHQEAITLLQQTTGIVELIIARGGIPNAKSQVSHQNSGNSSTLSDTSLNQDDELSHWRQEETIILVNDGSGLGFGIAGGKTAGVIVRSIVPNGVADRDGRLKHGDHILQINEENLFGMSNDLVAGIIRRAGNEVKIVISRDMVGPEPNEER--PEQLSV------------------------DTFEVQLQKNARGLGITIYGYVGDGRSRNEKGIFIQRIAEGSAAAQDGRLRPDDQIIEVDGHSLNGMNNNEAINMLRNTGNIVTLVVAR--------VFERS-----------NLSMPRQKGLSQEDLIKAVANDELYD-----YPLRPDEEEII----KQE------YVKLLGGQALVQVAQFSKFFDGGSLGISVEGSTERQDGVYVSHRIHSVSTDGPVGQTGKVVPGDFLIEVNGINVLEMTHPEVVKLIQTLPRNIRLIVAR 1990
N + E+ + L+ +GD +E +L+ + +L SPLF QI+++Q SVQ+L ++++ T +E + + + N+G + +G A EF + + +QGR + +L KPP GGLGFSV+GL+SE RGELGIFVQ +Q G +A DGRL E+DQILAINGQ +D ++HQ+AI++LQ+ V+L+IARG +P S + ++ +ST+S S HW+ ETI LVNDGSGLGFGI GGK GVIV++I+P GVAD+ GRL GDHIL+I + +L GMS++ VA ++R+ GN VK++I+R + EER P L + +TF+V+L KN +GLGITI GY+GD + GIF++ I + SA DGR++ DQII VDG +L G N +A+ +LR+TG V L + R + R N S+ ++ ED + + N + YPL E E I KQE + +++G + VA SKF + LGIS+E + H I SV +GPVG +GK+ GD L+EVNGI +L H +VV +++ LP + ++ R
Sbjct: 8 NRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLFSQILSLQTSVQQLKDQVNIATSATSNIEYAHVPHLSPAVIPTLQNESFLLSPNNGNLEALTGPGIPHING-----KPACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQLVSPIVSRSPSAASTISAHS-----NPVHWQHMETIELVNDGSGLGFGIIGGKATGVIVKTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAI-----EERTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGD-KKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGMKQEAELMSREDVTKDADLSPVNASIIKENYEKDEDFLSSTRNTNILPTEEEGYPLLSAEIEEIEDAQKQEAALLTKWQRIMGINYEIVVAHVSKFSENSGLGISLEATVGH-------HFIRSVLPEGPVGHSGKLFSGDELLEVNGITLLGENHQDVVNILKELPIEVTMVCCR 632 HSP 2 Score: 115.161 bits (287), Expect = 5.610e-26 Identity = 128/509 (25.15%), Postives = 213/509 (41.85%), Query Frame = 2
Query: 659 GLGFSVIGLQSETRGELGIFVQALQPGGIAEIDGRLSESDQILAINGQRVDAVMSHQEAITLLQQTTGIVELIIARGG----------------IPNAKSQVSHQNSGNSSTLSDTSLNQDDELSHWRQEETIILVNDGSGLGFGIAGGKT-AGVIVRSIVPNGVADRDGRLKHGDHILQINEENLFGMSNDLVAGIIRRAGNEVKIVI------------------------SRDMVGPEPNEERPEQLSVDT----------------------FEVQLQKNARGLGITIYGYVGDGRSRNEKGIFIQRIAEGSAAAQDGRLRPDDQIIEVDGHSLNGMNNNEAINMLRNTGNIVTLVVARVFERSNLSMPRQKGLSQEDLIKAVANDELYDYPLRPDEEEIIKQEYVKLLGGQALVQVAQFSKFFDGGSLGISVEGSTERQD-GVYVSHRIHSVSTDGPVGQTGKVVPGDFLIEVNGINVLEMTHPEVVKLIQTLPRNIRLIVARF 1993
GLG S+ G ++ R + +F+ + P G A DGRL +D++L INGQ + SHQ A ++++ V++I R +P+ + ++ + + T SD +++ LS ++ + + L D GLG I+ T +GVI++S+ +GVA DGRLK GD IL +++E + G + +++ A VK+ I S+ ++ P+ PE + + +++ K GLG++I G G I I + E AA +DGRL DQI+EV+G L ++EAIN+LR T +R L++ R + +E+ + EL P G LG+S+ G +R D GV+VS + D G+++ GD ++ VNG +V T V L++ + L V R
Sbjct: 1359 GLGLSLAG--NKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEINGQILYG-RSHQNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKETEPTVTTSDAAVD----LSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATDGRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTGLGLSIVG----GSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP-----------QRVRLTLYRDEAPYKEEEVCDTLTIELQKKP---------------------------------GKGLGLSIVG--KRNDTGVFVSDIVKGGIADA----DGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRI 1806 HSP 3 Score: 113.62 bits (283), Expect = 1.560e-25 Identity = 104/356 (29.21%), Postives = 173/356 (48.60%), Query Frame = 2
Query: 620 EIITIQLRKPPVGGLGFSVIGLQSETRGELGIFVQALQPGGIAEIDGRLSESDQILAINGQRVDAVMSHQEAIT-LLQQTTGIVELIIARGGI--------PNAKSQVSHQNSGNSSTLSDTSLN---------QDDELSHWRQEETIILVNDGS--GLGFGIAGGKTAG-----VIVRSIVPNGVADRDGRLKHGDHILQINEENLFGMSNDLVAGIIRRAGN--EVKIVISRDMVGPEPNEERPEQLSVD------------------TFEVQLQKNARGLGITIYGYVGDGRSRNEKGIFIQRIAEGSAAAQDGRLRPDDQIIEVDGHSLNGMNNNEAINMLRNTGNIVTLVV 1552
+ +TI+L+K P GLG S++G R + G+FV + GGIA+ DGRL + DQIL +NG+ D + QEA+ LL+ + G V L + R P+ SQVS + S +S T + + + + L+ Q + + G LG IAGG + + + + P GVA + +L+ GD I+ I + GM++ +++ A E+++V D+ +++ P S+ + L++ GLG +I G G G + I+++ + AA++DGRL+ DQII V+G SL G+ + EA+ +L+ T VTL+V
Sbjct: 1722 DTLTIELQKKPGKGLGLSIVG----KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGE--DVRNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSERRPSQSSQVS-EGSLSSFTFPLSGSSTSESLESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQQEPASSSLSFTGLTSSSIFQDDLGPPQCKSITLERGPDGLGFSIVG--GYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 2068 HSP 4 Score: 112.079 bits (279), Expect = 4.016e-25 Identity = 129/478 (26.99%), Postives = 208/478 (43.51%), Query Frame = 2
Query: 656 GGLGFSVIGLQSETRGELGIFVQALQPGGIAEIDGRLSESDQILAINGQRVDAVMSHQEAITLLQQTTGIVELIIA-----RGGIPNAKSQVS--HQNSGNSSTLSDTSLNQDDELSHWRQE-------------------ETIILVNDG-SGLGFGIAGGK---TAGVIVRSIVPNGVADRDGRLKHGDHILQINEENLFGMSNDLVAGIIRRAGNEVKIVISRDMVGPEPNEERPEQLSVDTFEVQLQKNA-RGLGITIYGYVGDGRSRNEKGIFIQRIAEGSAAAQDGRLRPDDQIIEVDGHSLNGMNNNEAINMLRNTGNIVTLVVARVFERSNLSMPRQKGLSQEDLIKAVANDEL--YDYPLRPDEEEIIKQEYVKLLGGQALVQVAQFSKFFDGG--SLGISVEGSTERQDGVYVSHRIHSVSTDGPVGQTGKVVPGDFLIEVNGINVLEMTHPEVVKLIQTLPRNIRLIV 1984
GGLG ++ SE G+ +++L G+A DGRL DQILA++ + V ++ I+LL+ V+L I +P+A S +NS S + + + + + + + ET I ++ G +GLG I GG +I+ + G A +DGRL GD IL++N +L ++D ++R+ V++ + RD P EE DT ++LQK +GLG++I G RN+ G+F+ I +G A DGRL DQI+ V+G + +L+ + VTL V R+ S R SQ V+ L + +PL + K + +Q + + G SLGIS+ G G V I + G QT K+ GD ++ + G + MTH + V L++ +I + V
Sbjct: 1491 GGLGIAI----SEEDTLSGVIIKSLTEHGVAATDGRLKVGDQILAVDDEIVVG-YPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDE-APYKEEE-----VCDTLTIELQKKPGKGLGLSIVG------KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSERRPSQSSQ------VSEGSLSSFTFPLSGSSTSESLESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGGVGSPLG-DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQV 1944 HSP 5 Score: 100.138 bits (248), Expect = 2.288e-21 Identity = 104/381 (27.30%), Postives = 166/381 (43.57%), Query Frame = 2
Query: 1028 SGLGFGIAGGK---TAGVIVRSIVPNGVADRDGRLKHGDHILQINEENLFGMSNDLVAGIIRRAGNEVKIVISR-------------DMVGPEPN--------EERPEQLSVD------TFE----VQLQKNARGLGITIYGYVGDGRSRNEKGIFIQRIAEGSAAAQDGRLRPDDQIIEVDGHSLNGMNNNEAINMLRNTGNIVTLVV---------------ARVFERSNLS---MPRQKGLSQEDLIK--------AVANDELYDYPLRPDEEEIIKQEYVKLLGGQALVQVAQFSKFFDGGSLGISVEGSTERQDGVYVSHRIHSVSTDGPVGQTGKVVPGDFLIEVNGINVLEMTHPEVVKLIQTLPRNIRLIVAR 1990
SGLG +AG K V + I PNG A +DGRL+ D +L+IN + L+G S+ + II+ A ++VKI+ R + V P P+ E P + D +F+ ++L K+ GLGI I G+ I+ + E AA DGRL+ DQI+ VD + G + I++L+ V L + A E+ N S M Q G + + I+ A+ + P+ P E I + SK G LG+S+ G ++ G + IH V +G + G++ GD ++EVNGI++ + TH E + +++ P+ +RL + R
Sbjct: 1358 SGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEINGQILYGRSHQNASSIIKCAPSKVKIIFIRNKDAVNQMAVCPGNAVEPLPSNSENLQNKETEPTVTTSDAAVDLSSFKNVQHLELPKDQGGLGIAI------SEEDTLSGVIIKSLTEHGVAATDGRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPATCPIIPGCETTI-----------------EISKGRTG--LGLSIVGGSDTLLGAII---IHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYR 1710 HSP 6 Score: 98.9821 bits (245), Expect = 5.341e-21 Identity = 68/224 (30.36%), Postives = 115/224 (51.34%), Query Frame = 2
Query: 590 NGMMSASQGREIITIQLRKPPVGGLGFSVIGLQSETRGELGIFVQALQPGGIAEIDGRLSESDQILAINGQRVDAVMSHQEAITLLQQTTGIVELIIARGGIPNAKSQVSHQNSGNSSTLSDTSLNQD----DELSHWRQEETIILVNDGSGLGFGIAGGKTA-----GVIVRSIVPNGVADRDGRLKHGDHILQINEENLFGMSNDLVAGIIRRAGNEVKIVI 1234
N + S QG + T++++K P LG S+ G G++ IF+ + P G+A +L D+I+ I G + M+H +A+ LL+ +G +E+ + GG + HQ SS+LS T L D+L Q ++I L GLGF I GG + + V+++ G A DGRLK GD I+ +N ++L G++++ I++R V +++
Sbjct: 1851 NALASEIQG--LRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEG-MTHTQAVNLLKNASGSIEMQVVAGG--DVSVVTGHQQEPASSSLSFTGLTSSSIFQDDLGP-PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 2068 The following BLAST results are available for this feature:
BLAST of TCONS_00028770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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