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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028782 ID=TCONS_00028782|Name=TCONS_00028782|organism=Clytia hemisphaerica|type=transcript|length=1977bp
CTGAAAACCTAATATTTGAGATTTACAACAGAGTAATATACGCCCTCGCT
AGGCTATGAAGAAAATAGaaatacgtcaaaaaaaaaaaaaatgtacaacA
GATAAActaaaaaagtaatacatgaaagctaagaaaaatttcatattgat
tTTAAGGCCTAGAGAAAAAAAAGCCAAGTTAGAATTTACAAAGTTGAGTA
AGGTATGAGCTCACTAAAACCTGTTCATCAAAATTGAATCATAAAGATCT
TGGGCCCTACTGTAGATTATGTTACAATcgtattcattctttttttataa
gaaccagtaaacttTGGTTGAGActcagctgttcttatttttcaacactt
tgaacattttaagcctcaaattgttcttatcctgttcttaaattgtttta
tttttttaaacatttttttagtctcattgttcttataaatttgttcttat
aaaaaaaaaagaatatattgaacaaaaataaaaaggtatAAAACAGAATC
ATAAAACTTGTTCCAAACTGAAATCGAACAAAGAAAGAGGATTACGTCTG
TAATTATAGGTAGATTGGACAAAGGTATTTGATGGGAAAACTTCATTTCT
TAGGTTTGATTAATCCCTATTTGTGCAAAGTTTTAACGAATTTGACATGT
CTGAATGGGCTTAGAAAGCGATCATCTTAAGCTCCTTCATCATATATTTA
AACACATAGCTTCTTGAGTCAAATTGTCGCTTCACAATTATTAGAGTGCT
CGTTTCTACTGCAGAGCGAATTACTTCATAGCTTCATTCTAAACAAGTAG
TTTTTATAGTTGAACAGAGTTGAGTTAATAAGACTATAAGTACGATCTTG
ATATAATTGCAAGAGAGGGCTGAGTGGTGAAATATGTTGGGCGAAGACTA
AATTATCAAAGTTCTATGAAATGgtaagaaagttgtttttaataACCGTT
TAGGAGAACGCGacggtctattgaataacaaattactcaaGCATACATTA
CTTTTCCTCAGCCAGGACAAATGGGAAAATTACCTTGTCCCTAGGTAGCA
GCTGTGTTGATTAAATCAATTACATGACCTTatcattaaaataatttatg
CTGAATTAATTAGCTATTCAAAAGCCCATCGCGTTCTCCCAAAGTACTAT
ACGAAATTTCTTCAAGACATTTCCTGTGTCTTCTTGTATAAGCAGATGGG
TCaagttggagtttttacaagctcttatttgatttggttggtcgttaaca
tgCCCAAGCAGATAAGGACATTCCAAGACAATACAAAGTCAAACTACATT
CTACAGTGCATATATTTTTGTATCAGACTTTATCTgccaaattttgcaaa
tttgcgATCTTTTGAGGGACTCAGTTTTTCGTTCAATGATTTTGCTAGCC
TCATAGATACTACATCCGTGGTAGAACCGAACGTCTAAAGAAGAGTTTGC
ACTAATTTCGAATAGGTGCGTGGCTTTAATTGTTTTAATATACTTAACTA
CAGTATAAGGGTTACCTAGCTCTATAAAACTCTTTATATCTCGTATAGTA
TagtaaaaaattcataaataaaGTTAATAATAGTATATAGTtacaatttc
taaaaaataccTAAATGTAAAAATGCTTTGGAAATATGTTTGGAAAATac
ttagaaattgaatatttgatTGTTAATTTGCATCAATAAATAAAGTGTAA
ATGAAGCCATAAATTTAGTTCATTTACAGTGTGAATAGGTCCTTATTATT
TTACGAGATTAACAGAGCTACGAACCACTCTTCCCTTTAAATCCTGTACT
TCtcgaaaattatttgaaatcaCGGAGGGTGAATTTGTGGACGTTGCACA
TTGTTTACAAAACCGATCCCCACCATGAGGACCCTTTGAAGTCGNatgtc
gacatccctcttctaatttcgacacccttttttagagatgGGAATTaaag
gaaggtcggaatcacagATAGACAAAA Run BLAST on NCBI transcript from alignment at sc0000703:143251..145227 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028782 ID=TCONS_00028782|Name=TCONS_00028782|organism=Clytia hemisphaerica|type=transcript|length=1977bp|location=Sequence derived from alignment at sc0000703:143251..145227 (Clytia hemisphaerica)
TTTTGTCTATctgtgattccgaccttcctttAATTCCcatctctaaaaaa
gggtgtcgaaattagaagagggatgtcgacatNCGACTTCAAAGGGTCCT
CATGGTGGGGATCGGTTTTGTAAACAATGTGCAACGTCCACAAATTCACC
CTCCGtgatttcaaataattttcgaGAAGTACAGGATTTAAAGGGAAGAG
TGGTTCGTAGCTCTGTTAATCTCGTAAAATAATAAGGACCTATTCACACT
GTAAATGAACTAAATTTATGGCTTCATTTACACTTTATTTATTGATGCAA
ATTAACAatcaaatattcaatttctaagtATTTTCCAAACATATTTCCAA
AGCATTTTTACATTTAggtattttttagaaattgtaACTATATACTATTA
TTAACtttatttatgaattttttactATACTATACGAGATATAAAGAGTT
TTATAGAGCTAGGTAACCCTTATACTGTAGTTAAGTATATTAAAACAATT
AAAGCCACGCACCTATTCGAAATTAGTGCAAACTCTTCTTTAGACGTTCG
GTTCTACCACGGATGTAGTATCTATGAGGCTAGCAAAATCATTGAACGAA
AAACTGAGTCCCTCAAAAGATcgcaaatttgcaaaatttggcAGATAAAG
TCTGATACAAAAATATATGCACTGTAGAATGTAGTTTGACTTTGTATTGT
CTTGGAATGTCCTTATCTGCTTGGGcatgttaacgaccaaccaaatcaaa
taagagcttgtaaaaactccaacttGACCCATCTGCTTATACAAGAAGAC
ACAGGAAATGTCTTGAAGAAATTTCGTATAGTACTTTGGGAGAACGCGAT
GGGCTTTTGAATAGCTAATTAATTCAGcataaattattttaatgatAAGG
TCATGTAATTGATTTAATCAACACAGCTGCTACCTAGGGACAAGGTAATT
TTCCCATTTGTCCTGGCTGAGGAAAAGTAATGTATGCttgagtaatttgt
tattcaatagaccgtCGCGTTCTCCTAAACGGTtattaaaaacaactttc
ttacCATTTCATAGAACTTTGATAATTTAGTCTTCGCCCAACATATTTCA
CCACTCAGCCCTCTCTTGCAATTATATCAAGATCGTACTTATAGTCTTAT
TAACTCAACTCTGTTCAACTATAAAAACTACTTGTTTAGAATGAAGCTAT
GAAGTAATTCGCTCTGCAGTAGAAACGAGCACTCTAATAATTGTGAAGCG
ACAATTTGACTCAAGAAGCTATGTGTTTAAATATATGATGAAGGAGCTTA
AGATGATCGCTTTCTAAGCCCATTCAGACATGTCAAATTCGTTAAAACTT
TGCACAAATAGGGATTAATCAAACCTAAGAAATGAAGTTTTCCCATCAAA
TACCTTTGTCCAATCTACCTATAATTACAGACGTAATCCTCTTTCTTTGT
TCGATTTCAGTTTGGAACAAGTTTTATGATTCTGTTTTatacctttttat
ttttgttcaatatattcttttttttttataagaacaaatttataagaaca
atgagactaaaaaaatgtttaaaaaaataaaacaatttaagaacaggata
agaacaatttgaggcttaaaatgttcaaagtgttgaaaaataagaacagc
tgagTCTCAACCAaagtttactggttcttataaaaaaagaatgaatacgA
TTGTAACATAATCTACAGTAGGGCCCAAGATCTTTATGATTCAATTTTGA
TGAACAGGTTTTAGTGAGCTCATACCTTACTCAACTTTGTAAATTCTAAC
TTGGCTTTTTTTTCTCTAGGCCTTAAaatcaatatgaaatttttcttagc
tttcatgtattacttttttagTTTATCTgttgtacatttttttttttttt
gacgtatttCTATTTTCTTCATAGCCTAGCGAGGGCGTATATTACTCTGT
TGTAAATCTCAAATATTAGGTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028782-exon-sc0000703-1491911889:143251..145227 | TCONS_00028782-exon-sc0000703-1491911889:143251..145227 | Clytia hemisphaerica | exon |
| TCONS_00028782-exon-sc0000703-1510915933:143251..145227 | TCONS_00028782-exon-sc0000703-1510915933:143251..145227 | Clytia hemisphaerica | exon |
| TCONS_00028782-exon-sc0000703-1575043694:143251..145227 | TCONS_00028782-exon-sc0000703-1575043694:143251..145227 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000703 | supercontig | sc0000703:143251..145227 . |
Blast
The following BLAST results are available for this feature:
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