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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028792 ID=TCONS_00028792|Name=TCONS_00028792|organism=Clytia hemisphaerica|type=transcript|length=3104bpRun BLAST on NCBI protein sequence of TCONS_00028792-protein >TCONS_00028792-protein ID=TCONS_00028792-protein|Name=TCONS_00028792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp MTCTHFLNCTHELCPEERHPIGDRSLSAVNSFLETIAFKATHYISQLCEERun BLAST on NCBI transcript from alignment at sc0000704:104736..131948+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028792 ID=TCONS_00028792|Name=TCONS_00028792|organism=Clytia hemisphaerica|type=transcript|length=27213bp|location=Sequence derived from alignment at sc0000704:104736..131948+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000704:104736..131948+ >TCONS_00028792 ID=TCONS_00028792|Name=TCONS_00028792|organism=Clytia hemisphaerica|type=CDS|length=27024bp|location=Sequence derived from alignment at sc0000704:104736..131948+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028792 vs. Swiss-Prot (Human)
Match: NCKP1 (Nck-associated protein 1 OS=Homo sapiens GN=NCKAP1 PE=1 SV=1) HSP 1 Score: 398.667 bits (1023), Expect = 4.788e-120 Identity = 232/572 (40.56%), Postives = 347/572 (60.66%), Query Frame = 3
Query: 45 RYAIAYPMTCTHFLNCTHELCPEERHPIGDRSLSAVNSFLETIAFKATHYISQLCEEHLRLTRQLDP-------GTAVNFHKILEEXXXXXXXXXXXXXXXGEESRRKTVEAQKPIDTKYHGQIDLLTAITHCKDLVVWEHVFSPREYLVSHLEEFFSKTINRLLNYNEATHEIAKPSALIKDIKSYITSLHRLEEFVNLDMGRIFNATLLQQTQNCDNSGGPTLTSTYTFWYNDILLKRLFLNGGAVYSPAR---LSLITRSKAGYPRVEEYTDLVEMRALAELLGAYGVRHFSRKLVSRIIGEVEELKKMILVNKDVLGYVCEHPLNFDVFD----VLKRIKTFDELITRSTNIGILLLFRMLISTGLKDTLPKRVPYLMHVLKDFKGNNTRNE----STLTHEMAQAAGIECEFDAELYHALRNSREKN---EEDGMIWTLLLAFWALSISAIAFKDSSEYNSVLEAHENNIHCLAYTLNLLPQALFTITGESVQEKIQIFLQIAATGLLKLSTDQSNVSKDMIPKQRGSAYILLDLIVKESSYMTQQELDIYFPYPLIREAYNHVYKK 1697
RY+IA+P+ CTHF++CTHELCPEERH IGDRSLS N FL+ +A +A + I+ +C E L+ QL P AVN + K + P KPG ES RK +D + +L +I + ++VVWEH F+PREYL SHLE F+K+I + YN+AT EIAKPS L+ +++Y+T L +E +V +D+ R+FN LLQQTQ+ D+ G PT+TS YT WY + LL+++ NG Y PA ++L T ++ + EEY+D+ EMR+L+ELLG YG++ S L+ I +V ELKK+++ N DVL + +FD D + KR+ + D ++ R T IG++L FR L L+D L +P+L+ ++DFK + R + +E++ AAG+ CE D L AL + + +N EE+ I LL+ F A+S+ +A S+Y+ +E H NNIHCLA +N + ALFTI S++++++ FL +A++ LLK+ + + + R S Y+LLD+IV+ES ++T L+ FPY L+R AY+ VYK+
Sbjct: 564 RYSIAFPLLCTHFMSCTHELCPEERHHIGDRSLSLCNMFLDEMAKQARNLITDICTEQCTLSDQLLPKHCAKTISQAVN----KKSKKQTGKKGEPEREKPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKSIVGMTMYNQATQEIAKPSELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLRQVS-NGHIAYFPAMKAFVNLPTENELTF-NAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLT---QMRTSFDKPDQMAALFKRLSSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPFLVSSIEDFKDHIPRETDMKVAMNVYELSSAAGLPCEIDPALVVALSSQKSENISPEEEYKIACLLMVFVAVSLPTLASNVMSQYSPAIEGHCNNIHCLAKAINQIAAALFTIHKGSIEDRLKEFLALASSSLLKIGQETDKTTT----RNRESVYLLLDMIVQESPFLTMDLLESCFPYVLLRNAYHAVYKQ 1122 The following BLAST results are available for this feature:
BLAST of TCONS_00028792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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