TCONS_00028795 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00028795
Unique Name	TCONS_00028795
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1472

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000704:156012..170965+

transcript sequence

>TCONS_00028795 ID=TCONS_00028795|Name=TCONS_00028795|organism=Clytia hemisphaerica|type=transcript|length=1472bp
aacagaaaaaaatgaacaaatagAAAAACACAAGGTATAAATAATGACAT
CAGGGCcatcataaaaaaaacaataaaatgatgcAAGTAGATGCACCTTA
CTCATCGTTCGATGATTCAGAACAATTTGAAGACTCATCATCCTGGATTT
CTGACTCTGACCAAGACGTCAAGTGGTCAGGATGGAAAAGGGCGTCACCA
ATTTCAACTGATCCCTCACcaacagaagaaaaagaaGTCTTGTCATTGAT
TGAAATTTGCTCCAAATGTGTTGCCAAAAATCACGCTTTTGAAACAGTGG
AGCTCTACACACCACCCATCCCGGACAACCTGCAATTACGGATCGCATAC
CATTCCTTCCCAGAGAGTGAAGAAGAAATCCGTTTGTATTCATGNTGCAT
ACCACTCCTTCCCAGAGAGTGAAGAAGAAATCCGTTTGTATTCATGTCTT
GCTTCAGGCTCAAATGACAAATTCAAACAAGGAGAAATTTTGGCTAAGAC
AGGAAATGTTCATGACGTTTTACAAATTGGCTTTCACTTGAGCGGCGTTG
TTACACAACCGGCTCCACACACCACTGCAAAACAAACCTTCAACATCGCT
ATCACGTTTGACCGTGGTCATATTACGTCATGTCAATGCTCGTGCCAAGA
AACAGCCGCGTGGTGTGAACACGCCAACGCTTTATGTATCTACCGTATCA
CGCGTAAAGACGAAGTAGCTTTACGTTCGCCCGTTTCTGAGTCGCTCGGC
CGGTTGGAGAGAGATCAACTACAGAAGTTTGCGCAATATCTGATCAGTGA
GCTACCGCAGCAAATACTACCGACTGCACAACGTTTATTAGATGAATTAC
TTTCTTCCAAAACTTCACAAATCAACATGATCGCTGGTGCTCCTGaTCCG
ACCGGTGGAGCATCCGCCTTTGAAGACGCAAAATGGGTTTTAGATGAAGC
TTCACTGCAAGAAAACATCAAGAAGATTTTGGCACGGTTTTGTGGAACTT
TACCTTATGTTATGATGGACTCCAACGCTGCTTTCTTGAATTCAGTACCC
CCTGTTTCTCAAGAATGGTCAAACTTGCTACGCTCATTCCAAGGAAACGA
TCCAGAAGCATTATGGAACCTTTTAAACATATCCCGACATTTATACGCCA
AAGAGCCGCCCCACATGTCATTGCCTTCCACACACGTGCTATCGAGGCAC
GCGTCAGCACATCTCATGGAAGAGATCGTCCACTTGTGGGAACTGACTGT
CATGTCTCCTTACCTTGATAAGGACACCAAGTTGCAAATGAaactcaaat
ttgaaatttggaacCAACAAGTGATCGAATCTGGTCGCAAAGGTCAGGGT
CAAGGGATCGCTTTCAACTCAAGGATGATAAAAGACTTTCCTGGGTTTAA
TGGACCACTGGAAGCAGCTGAGATTGATTGGGATGTCTTCTATCAAGTCC
TTGGAATCCCTCAAAGTGAGTG

Run BLAST on NCBI

transcript from alignment at sc0000704:156012..170965+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00028795 ID=TCONS_00028795|Name=TCONS_00028795|organism=Clytia hemisphaerica|type=transcript|length=14954bp|location=Sequence derived from alignment at sc0000704:156012..170965+ (Clytia hemisphaerica)
aacagaaaaaaatgaacaaatagAAAAACACAAGGTATAAATAATGACAT
CAGGGCcatcataaaaaaaacaataaaatgatgcAAGTAGATGCACCTTA
CTCATCGTTCGATGATTCAGAACAATTTGAAGACTCATCATCCTGGATTT
CTGACTCTGACCAAGACGTCAAGTGGTCAGGATGGAAAAGGGCGTCACCA
ATTTCAACTGATCCCTCACcaacagaagaaaaagaagtatattaaatttt
ttttctaatcagACCTCCTTTCTTTTGGATCTTTAATCTAAACTAAGTTA
AGGTCTCAGGTAAAGTGGATAGACCATCAAAGGTGATGTTTTATAATATA
ATGATCTATGAAATAGTGTCAAGGGGGGGGTTCAAGGTCCCACCTAAGAT
TTCAGGCCCAACTACTTGAGAGTTGAGTTGCAAAGCCCCACCTAATGTAT
TGTAAATCCATTGCATTATTCATTCACATTTGTCTGTTATGGTCGATAAG
AAAGGTTTTTCATGGTGTTATATAATGATCGTTTCAAATCATTAATGATG
GGAAATGTTGCAACGATGaacaaatatcaaaacatttctttttgaTGGAC
TGTTGGTTCAAGGTTGCAAAATGTATTTTCCTTTATCGGGTGCGTCTAAA
ACATAATCGATAGCTTTTGTTGAGATATAAAGAATGCGTGCGAATTTCTA
CTAGAACCTTTTTCATGTGATCCTTATGTATGTTAATCAACCCTAAATAG
TGCGGAGAGGGATCTGATCCCCCTTCTTAACACCTCCCCTGGAATCCCCT
CCCCCCCCcgacctttaaaaatgcctttttttggacaaaaatagctaaca
aatatatgcGAAATACCTTTTAAagagagagaaagcgaaatgataaactt
tctttcttctttttgactccaGATCACTCTAACAGAAAACATCCTTTTAT
GAAgaacaaatttcataacagtgcttgaaaataatctgcaatatatatgt
aagcgcccccttcttaaactatcCCCCTTCCTAACTATCccccctttttc
atgaaaaggTGTCAAAGGGGGTAGTCTGAACTATGCCCTATAATGCTATA
TGTATGTTTAatcatttcttaaattttcaagtttgaattttgtaaaaatt
gtcATAATTATATCTAAAGTACCCCAGCAAACTACCTttttacacgaata
ttactaggaaAGTATTTAAccgccttgaaattaacacgcacaaaattaac
acgaattttatttgcttttNATTTTAAacgccttgaaattaacacgcaca
aaattaacacgaattttatttgctttttcaaggacaccacgtcTGGTTTT
AAtcaagggggtttttattaaaacgaaatttttcaatttgtgttaataaa
atgaccaGTAGTATTCGTGTAGATAAGGTAAGCAAATTAAGCATATTTTT
GGCACAGCCCGTTAGAGGAAGTATAATCTACAACCTTTTAAAACTTTAAG
TTATGTATTGaattattgaaagaaaactttttaaattttatttagcTCTG
GTACAGTATCTTGTTTGTTTATCATCGAGGACTATTCAATATAATTTCAT
GCCAATGATCTACAACCtttcctttgaaaaattacaaattataGCACTGC
GATAATggcttttaaatctttaaataaaaattctcCTTCTTATCTCACTA
AACGATTCATTCTCTGTGGTAATAGGAATGAGAAAGGCGAGCTAGTAGGT
GTGAACACCAAAGCTGCGAGGGAAAACAAGTTACATgttcaaaaaacaag
aaacaaaatatGACTCTAAAATGTTTCTTTATAATGGTACTGACGTCTGG
AATAATCTACCTAATAATAATGTCATTTCTTTCAATAATCAATTTTTGTC
TTTCTGTTTTTCATTCTCGTTTCGAATTTTGTTAGAAAAGCATGCCAcgt
aaaatatttgttattattattatttttattattaccttttataaaaaacc
aaaaacaagaaattttgttgatttttttctcgatcCTTTGTCATTCCAGG
TCTTGTCATTGATTGAAATTTGCTCCAAATGTGTTGCCAAAAATCACGCT
TTTGAAACAGTGGAGCTCTACACACCACCCATCCCGGACAACCTGCAATT
ACGGATCGCATACCATTCCTTCCCAGAGAGTGAAGAAGAAATCCGTTTGT
ATTCATGNTGCATACCACTCCTTCCCAGAGAGTGAAGAAGAAATCCGTTT
GTATTCATGTCTTGCTTCAGGCTCAAATGACAAATTCAAACAAGGAGAAA
TTTTGGCTAAGACAGGAAATGTTCATGACGTTTTACAAATTGGTAAGGAA
ACAatgcataacgtttataagcatactgacaCCAGGATATAGACCTTATc
cgagttttttatttttctcgaggaattcctaagagatttctattgtaata
cactcgaaacaatcccacaatgcatcgctttttttagaaaaataaaaaac
tctggTCTATTGtggaaaaataagcatatcatAAGAATAcgtacgctttt
tttataagaatatagtactttggctgaggttgagcattattcttattttc
aattATATCTTTTCTACTTCAAGAGCAATGTACCAAGACGTCGTGTGGAC
TAGCAATaattttttggaacagactttaatTCAATTTCTTTCCACAGGCT
TTCACTTGAGCGGCGTTGTTACACAACCGGCTCCACACACCACTGCAAAA
CAAACCTTCAACATCGCTATCACGTTTGACCGTGGTCATATTACGTCATG
TCAATGCTCGTGCCAAGAAACAGCCGCGTGGTGTGAACACGCCAACGCTT
TATGTATCTACCGTATCACGCGTAAAGACGAAGTAGCTTTACGTTCGCCC
GTTTCTGAGTCGCTCGGCCGGTTGGAGAGAGATCAACTACAGAAGTTTGC
GCAATATCTGATCAGTGAGCTACCGCAGCAAgtgagtcttttttttttac
acaaCGTCGAAataacgtccatgtgacattcataacatTCGTGAAACGTG
AAAATAACATTACGTGCCAGCTTGAATAcgagcctatactagacgtcacc
cgcgttttttttacgcgattaacgtctattccactttgtgactttttcga
atattttgagCCCACGTTTTCAGGctttaaacattcgattttttgacgcc
acttttaactttcgaagctcctgcagtagcaattaactttcgaagctcct
gcagtagcaaaaatatcgaacttgcgtctaaacacttgaaaggcctcttt
ttttcaaaaatcatcaaaatggaactcactaagaccatgttcacacgtta
ctgttgcatttcgctccggtatgattttcgttacggatctaatgtgttca
tattggtttcaaaacgcttcggagcaagaaaacggagcagttccgctccg
atgaaaaaagtggagcgaaaccgtttcgatctgttttgttttgtaacgtc
ttcttttttgacgtttcgaattttgacgttcacacttgtttcggaaccgt
ttcgtttcgtttcggaacggaacggaaccgtaatgtctgaacatggtcta
agaaacagaatgaaaaaatccggtttttggtgaggtactcACTACTTGAA
TACGATCTCCTCGCTCGAACTCCCGCTCCTTGTACTTtgggcgtacaaac
tttcaagagcagaaactttcgcgaggtcgaaaaatcgcgaaatttgtgac
atttactttcgcgaattttaggaaaaaatgtttttttgcgagcataaact
ttcgtgaATTGCCCtttgcgaaaatcgcgaaagtttctaagaataaaaac
attctggtttaaaatatttcgctctctcttagagcattttcagttttttt
gaataacaaagaCGTTTAACAATTATATTTAACGACGCTAGAACGGCATT
ACAATGACTTCTTCAGTTTTTGACGTCACGGAACATCTGGTACACTTCTT
TCGCGTATCCGTGGTAGTCTTTGTTGATACCTGTATCTTTCTGTATGTTC
AGAAAGTTTctactcgcgaaagtttgtacacctaaagtaTATTCGATTCA
GTTAATgattaaattaattaaattattagaatattgacaaaaatgaaaTC
CTGTTTGTATAGCTCCATAGAATTATCTttattattgccgacccaaaaaa
atatgagcgttttgattggttgagagcatcgagatacttacgatatttca
tatttctctagtatgaaaatatgaccgcgttgactttttgGGGACTGGGT
Aaacggcgggagaaaaatcaaaacaaaacagccgaaaaaaactaactttc
gGAGAACTTGACTTGGGAgtcaaagggaaaaacgcaacaaaaattatttt
cagattaacttttactttggagttattccataaaagacactaaaatcaaa
tctgatcaactaaagtctgtccagatataatagacgatatcggcttaacg
aaattctccccgaatgattacccatgatgcattgcgcaaaaaaattcagt
aagtcaatatagtccgtgaatttttttgcGCAATGCATCATGGGTAATCA
TTCGGGGAGAATTCGTTAAGCCGATATCGTCTATTGgcagtggaaacaag
aatgcctgtaacttttgatagtcaaatacaattatggaaatttttttgct
tgttttagagaatcaaaagcgctatatttgaatgtatttttggttgaaaa
attcgcagTTTTTAGCGGTTAAGTTTGCGATTgccaaaattgagcttttt
ttctacttatgctttaacgttcatttttacaccagtggcaGTTcgacctt
aggttaagaagtttgttaaatttcaaggcaaacagataagttcttcggaa
gatatgggacccgaaataccccttggtagcacttttctgtgaaatatcaa
atctccaacttattactaaaaacgggggtagtgatatgattgataaaaaa
gtttttcgatcataacacatttacgatctttttaatgacctcatagccaa
actgtgtgtagtgttttgggaattagcaaagttctttaatgacttaaaaa
taacaaaggcaatataagttcatgcttatcttttcaataaaagcagttat
actgtgatttcactttgtttcgaaataatcaaagtctattcacgataagt
gtgcactcctttttcttttacctataacttttgaaggaattcttcaatct
ttataaatttggtatcattggaaagatattagtgggtggaacaatttgaa
ataaaaagatatctaaaaaattctaaaaatgaagatgaaaatgaagaaga
aaaaaatgaagatcttgtagaaaagtgctataactatcattttcactgaa
gtgaatccttgattattgaacgtcatcactgtgaaaatgttttttcaaaa
attatcattcagtcaaaagatatcaaacaaagttatgagctgattgacgt
ctaaaaacgctgttttctgctgttttctgctgttttttggggtcaatcac
ttatcaactttgtatcataactttattttgaataaatatttcagtgaaat
ttcttcacagtgatgacctcctaagatcaaagaatctctccagtgaaaat
gaaagttatagcacttttctacaagattttcattttttcttcttcatttt
catcttcgttttaagaatttttttaaagacttttttatttcaaattgttc
cacttgcaaattatctctccaacgataccaaatttataaagattgaagaa
ttccttcaaaagttatctATAACCTATAGGtaaaaaaaaagagtgcacac
ttatcgtgaacagacgaACAGATTATAGTACGTATAAATTCTCAGAATAA
TTATTACTGTAAAAACATCTTTATTATCGTCCATTTCAGGCTAATAATCT
TACCTCGACCGAATTTATAGACGTCTGTTTTTCTGTTCATAGATACTACC
GACTGCACAACGTTTATTAGATGAATTACTTTCTTCCAAAACTTCACAAA
TCAACATGATCGCTGGTGCTCCTGGTATGTACAGATATCCTTATtccttt
aagcttttttcacacgCACTCAAAACTTTACTTTAGACCTTAAAGAACGG
GGAACTTCCCTAAGCTTTcatagtgttttaaggccttatgcTTAAGTtga
aaagtcacgtaagaccctTTTAATCAACAAAAGCTCTacataatgtcggg
gaaattcccaaaagccttacgaacgattttcTGTAAGGTctgaagtaaaa
ttttacgtgcatgtgaaaaaagctttacacACTAGATACGCTAACTGCTT
ACAAGATTTCCCTTGAAAATATGTCAtggcgtcctccagctttttggtcc
cccctaatatgagctaaaatcccccatctggcctttcccccccccacctg
tctttaaaattcgtgctcccccatagtttgcagaggggtatgaacccccc
taggtttatttcatccccccctatatacccatcccccccttttgtaatga
aatcttaccCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGGggggggggatgatcccatgt
ATGTCCAGTGAAAAAGTCGACTAGTCCGCCATGCTTGTTTCTGTTTTACA
CTAGATTTTTGCACGCTCGAATTTCCAAACATTGACAACAAAGATAGCAG
TTGTATCTGCTATCTATATGGCAGATTAGTCAGCTCTTATGGACATTCAT
TTCATTCCAGTCATTTTGTAGGCCTAGAAGCCTGGAACTATCTATTATGT
AGTTTACCATTGACACCATTCTAATTTTTTAGTTCTAATCCTAGGAAAAT
CAATCTCACTGTTATGCCAATTTGGAAATGATGACCTAGGTTTTTCTCCA
TCTGttttaatgggctcttccagaaaatatttgagtaTGAGGGGTAGAGG
ATATAACATGTTTTGGAAATTTAGCCctggacattgtgaattttgagccc
ccggacaagcattgcttgacccccccccccccccNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNacattcaaaatcacccctaatcag
agcaattttttccccaaaacaaggctaattttgcagatttttcactaccc
ccggacaaaatatccaatatatcctacACCTTTGTAGAAAGGCATTATTG
GTATGcaggtttttttttataagaacatcccaaaTCTTTGTAGCCTTTGG
ATACCTCTTTTTGggtcttaaatgttcttaacttgttcttattttttaca
attttgtgacTATTTTGTTCATTTCCCTAAgaaaataaggtggttttagC
GTCCagcaaagcctttaaaatgttcttaacttgttcttaatattttgacc
atcgaagccttaaaatgttcttataaaaaaaatgtgtatataactttttt
ttctctttttctagaTCCGACCGGTGGAGCATCCGCCTTTGAAGACGCAA
AATGGGTTTTAGATGAAGCTTCACTGCAAGAAAACATCAAGAAGATTTTG
GCACGGTTTTGTGGAACTTTACCTTATGTTATGATGGACTCCAACGCTGC
TTTCTTGAATTCAGTACCCCCTGTTTCTCAAGAATGGTAAGTTTACATCT
CTATTTCTGTTCTGTTCGAAGACAGTATTTTGTCAATCCAAAAATcgctt
ttcttttttatgaatCGCATTATTTTTCCATCAAAAGCAAGTGTTCATGA
TATgcaaaagagaaagaaaataaattcttaaGTATTCGTAAGCAATGTCA
ACGGCAcctaatgggccattccagaggAAGGGGTgtccatgatatgcacc
attgcaatgtcttccgggCACccgacagctgattggttgaaagtgacgta
ttgactgattttacgtcacttacaaccaatcagctattgggtccgtgatg
taatgtcagaagacgtTGCAACGGTGCATATCACGaattgcacttttgag
gacggcggagTGACTAAAGCGTACCGGGTGTGccagaaataagttaccct
cttttgACTTTAAGTGAAATTTCTCAAGTTATACAACTTCTTTAGGACTC
GAACCTATTTCAttagaaagaaaaagaataaattttaatagattttgatg
gATCATTCATTGAGTTTGGTAATAAAACAATATCAAAAGTTTTGCTtgaa
tgaattaaaaaatcattctattaaattttcattctcaCTACTGTGAATTA
TTACCTTTCGCCCGAATGAAGTGTTTTAATTGCGACTAGAATTAGATTAA
ATTAGCTTTCTACCCAATTTATCCTAAAATTGGGTCTAATTTTTGGTTAA
AGACcccaaaaattccaaagttaTCGTCAGTAATAATAATGGCATTTCTT
CTAGAAATACCATATAGTTTCACTTTTAAGGATATTTTCCTTTGTAGCCT
TAAGACTGAAATCCTTTTTTCCTtgcattgtaatttttaaacgCTTAGCT
TTTGTTTTAATCACTTAAACAATGAAATCAATGCTACATGCATTCATgtt
tctgtcaaaatttgattggctgatttttgaactttttgagcAATCTCAGA
AAACGATTCATTTTCCatttaatcataacttttgatctagttagTAGGAG
GTCAAACCTGgggtcccgtgacatcttttttacgatttagccatttttag
tccattccaaagaacagtatattatgAGATATTTTTTAGAGGGAGGACAC
GGATTAGGCCAGGGActgcccgggaaaactttttatgaacaTTAGTGACG
ccgtaggcaaaactgcaaggaaaaataaggggtagagaatagcttatttt
caaaagtcaaaattaaCGGAAATGATTGGTGCCATTaaaaagagcatgaa
attccgagcaaaaaaatgtattacaaaaactctctgactaaagcacacaa
agaaatacagccgctttaagaccaactaactgtcagctctactgtgattt
gacgtTAAATCTTGTCTTGGtcgtactgacgtcggtatgtttttgaactt
caagaggctgtatttctttttggacctacctggaggtcctataaattaac
ctttgtccgtccgtccgtccgaccgttcgtccgttcgtccgttagACTGG
AGTCgattataatgcatgtaatactaataataaacacaaataatgatacg
ggatttagtttgtataaacgactggaagaatacggtgttccagccttata
gataccgggcctagctacgcagaaacttgcgtagcgagaaaacaatttgt
caaacaacaacaaactctcaaaataaaatcaactcaaatgaaaaactttt
aacacacaaatccacacacattttattttcaagaattttttttgagcggg
aaaaaattttaattgcgaatTTGACACTTTTTATTTGTTTGGAgctagtg
cacaaaggtttctagacgactaaaatttactttttgctttatttctaata
tgtctgaattagtcgtctagcttgctagactattcgtccgtctgttacct
gcttttctcgagattggctcattagttttttctgatttttggcacaatga
tgcaaaatggtaatgcccaaaatgtgacggagcccgattttcgaaaaaaa
ttcacttccggccgaaaataccggaaatacgccggaaaaaccggtttttt
ggcattttctcaagatttcataattagttttttctgattttttgcacaaa
gatgcgtattagcaatgcccaaaacttggcctagtccgatttttgagaaa
aaatcttttccggtcgaaaatgccggaaatatgtcggaaaaatgggcttt
ttgacattttctcgaattttcatttttagttttttctgatttttggcaca
atgatgcaaaatggtaatgcccaaaatgtgacggagcccgaattTCGAAa
cacattttttccggccgaaaatgccggaaatatgccggaaatcgccgttt
ttgcagatttgcattggactttttccatataattggttgttttttcattc
aaaaacattattaatagcaatgcccaccatcaagcatgtttcaattttca
ataaaattgatttttgaagccggagctattttaaaagtcgccggaacaac
ctattttcgccggaaagacagtataatttctcgagctgtactttatattt
tttcatgaaattttgcacactgatgcaatatgacaatacctaaaatgtga
cggagcccgaatttcgaaaaacattttttccggccgaaaatgccggaaat
atgtcggaaaaatgggctttttgacattttctcgaattttcatttttagt
tttttctgattttttgcagaaagatgcgtattccaaatgctcaaaacatg
gccgagttcgattcgagtaaaattttttccggttgaaaatgccggaaatc
gccgtttttgcagattttcattggatttttccttatatttctatgttttt
cactcaaaaaacattattgataacaatgctcaccgtcaatcatgattcaa
ttgtcaataaaactgatttttgcaactaGAAcatcctatttatttttttc
cctacaacccttccctctccccccatcaacaatcaatgatgaatttattg
cgttgtgtattttcgctaaacgctatattttctgactgatttttttcatt
tttcttttcgcattgctatctaactttcatcatcaggtaggtccaatcag
catctagcttgttgtgTTTGAGTCAGAGAGTTgctgtaatacattttttt
gttcaGAATTTCATGTTCTTCCAGATGTTACCAATCAGTTTCATTTATTA
Cctatgacgtcactattttggccataaaaagttttcccgggcccaatccg
cgtcctccctctcaaaaatatcttataaTATACTCTGTTCTTTGGAatgg
actaaaaatggctaggtcgtagaaaagatgtcacgggaccccaggcttgg
cccccctACTAAGTAaaccaaatttgataaatgaccgaTCAAAGTTTAAG
TTTACCTTTCCTCttcattataaaaaatagtTAGATTCTTTAGAAAGTCG
TAGATCTCGAGAAATTCCGTTTTGAAGAAGGTTAACTTATTTCTGACACA
CCCGGTATGTGAAGTATATGGAACATATTAttctaataatttttctttgt
cgTATAGGTCAAACTTGCTACGCTCATTCCAAGGAAACGATCCAGAAGCA
TTATGGAACCTTTTAAACATATCCCGACATTTATACGCCAAAGGTGATCG
TAACGCCGCTCATCTTCTGCATTTGATCACAGAGGAATGTCTATTGTCTT
ACCAAATGATGTTCTATTGGATGTTGAGCTATAATTCGACGTCCAATCAA
CACGCAGCTATTGGGCGTGGTCGTCCTGGTAAGCCACACCCTCTAAAGCT
TTTTCACATGcacttaaaattttacttaagaccttagaGAATTGGGGATT
TCCCTTAGCTTACGTTTAAAGCtttaaggccttatgtagagtttgcttac
gttcaaaaagttttgaacggaatGAAAAGTTACGTAAGACCCTCTTACTC
AACAGAATTAAAAATTTGCTACAAGGGGTTTTTCGCCATTTCATTTTTCG
ACAcgcaaaacaaaaactttaaagCCAATATATCTAGTCATGAGTCTGAC
CTTCTATAAAAAACcgagtaaaattttacgtacatgtaaAAAAGCTAAAA
GGTCTGTCTCCCCGTTTACGAACCTAGCTGAAAGAACGTTGCTGTTTCAG
AGATGATACACTAGTTTTATTGCTCATTTTGGTCCGGTCTTTTTCGTGTA
CAGTTAGTTTTgcctctctctctctaattgaATCCTTCAAGTGACttaga
attttctttgaattataaGGAAAGTGTTTCACATCACCTTTCAAGCAAAT
GGAAAATGTTTTATTCGAGTTACAGAGACATTcgaattgggcttttccag
aaatagtccgtgccccccttgttgaggatatcggatatccagagggttta
cgatttttgctcaaaagtggatatccatgGGGATAAATATCtaaagggag
cggatatccagggggtaaagtgtcttttcaagtaaaaaatacaatacgat
atccaggggtaagcatctttataagagaggatatccaggggtttgagcat
atttttaagagcggatatccagggggttcaatacttcgaaaaatcaatat
cctcaacagcgggggttgaatttttttctggaaaagcccatgaGGTTTGA
TTAAGAAAGAATATTGACTGTACTTCACAACTTTGTACATTAACTCCCTA
TAATTCGAACCTATAACTATTAAAATCTTATTCTAATTCGAACCAAAAAA
TTGGTCCCTCAGTTagaaattagtataaaatactttctgtttttcaaatc
tttctctGATTCGAAGAAAATACTTGGTCCCTTGTAAATCAAATTAGAGA
GGGTCAACTGTTAGCGAGTTCCCAatccaaaaaccgggatttttcattcc
gtttcttggTGAGTTCCACTTTAATGATGTTCTGAAATGAGCGAAAAAGT
TGCAAAGTGGAATAGTGTCGTGTTGCTCAAGGCTGATCATACCTGAGCTA
ATGacaacaaaatttatatttaaaagtttttcccgGATATCGGCCTGACT
TACCGCTGGAAGGTAAGGAGACGGGTTGGTACCCTTTGTAGCTCCTGGGT
CAAGGCTCAACGGAGTGGACACGAATTTAGTTCATTATAAGTACTCAATA
TTAAAACACGataccaacaataaaatccaaataaatatatataaaaagtt
CATAAAATATTCACGTCTGGATGCGCCGTTCACTGCAGATTATTACGACT
TGGGTTTTATTTCACTCTGCGGAGATCCCCAACTCCGCAGTCTTTTCCTT
CTCTGGGTTTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTTCGGAGTCCGGTGGGCGAGTGTTCTT
TTTTGTAAAACGAAAATgttcttttgaaatcaaagtctTTAATAATTTAC
ACACATTCATATTTTTGTAGCTTCTTTCTAGATTCTAGATTATGCTTTAG
TTTCTTGACCATGACAATAGACGTTACTGCGTAGAAAAATTTGTGCAACA
TTTGTGATGATTTCACTGATTtcgtctgccattttgtttctaagcGCCGT
CCGCCATCTTGGTACGATCAAGAAGTTTATGTTGTTCGTATAGTAAGTGT
CTAGTGTAAGCTAGTCAGCCGTTAATCCTTTATTCCTTCATTTTCAGAGC
CGCCCCACATGTCATTGCCTTCCACACACGTGCTATCGAGGCACGCGTCA
GCACATCTCATGGAAGAGATCGTCCACTTGTGGGAACTGACTGTCATGTC
TCCTTACCTTGATAAGGACACCAAGTTGCAAATGAaactcaaatttgaaa
tttggaacCAACAAGTGATCGAATCTGGTCGCAAAGGTAATAATAAGAAC
TAGCCGGTTAAAactttgacatgttatacattttctgttaggctaactat
ccttgagtctgaaaattttagaatcgcaaagaaaaaattagttgaacaag
aaaatgaagacttttgcgacgaagagtatttcaaatttgaagagcttatt
ttcggcgaagacgaaatatctttaaaaaactttggggtagatggtgtatc
ttttaccgaactaaaaatatattttcggaaaatttttctaaaagcttatt
tgtctcaaaatcttgaaaatttgctttttgaccaatttttcatccaaatt
gttcatagaaaaacagctatTACTTTTGATGCATCagtttagaatatttt
tccgaaaaatttaaaacagttcaattctttgcggacagtttgaaaaaaat
tcgaaaacaaaaaaatttatgtaggcgccctcccctaccttcgggtagac
agctatacgaaaagggagcctttggATCGCCCTCAACTGCgatcgcaaac
ttacttacttactttaatGCACAGGTCAGGGTCAAGGGATCGCTTTCAAC
TCAAGGATGATAAAAGACTTTCCTGGGTTTAATGGACCACTGGAAGCAGC
TGAGATTGATTGGGATGTCTTCTATCAAGTCCTTGGAATCCCTCAAAGTG
AGTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016330	XLOC_016330	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000704	supercontig	sc0000704:156012..170965 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95099	0	0	0.558708	0	0	0	0	0	0	0	0	0	0	0.146119	0	0	0	0	0	0	0.69143	0.161144	0.879632	0	1.93342	0	0	2.39722	2.1348

Blast

[Close]

BLAST of TCONS_00028795 vs. Swiss-Prot (Human)
Match: ZSWM8 (Zinc finger SWIM domain-containing protein 8 OS=Homo sapiens GN=ZSWIM8 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 3.563e-99
Identity = 171/396 (43.18%), Postives = 235/396 (59.34%), Query Frame = 1

Query:  388 IHXAYHSFPESEEEIRLYSCLASGSNDKFKQGEILAKTGNVHDVLQIGFHLSGVVTQPAPHTTAKQTFNIAITFDRGHITSCQCSCQETAAWCEHANALCIYRITRKDEVALRSPVSESLGRLERDQLQKFAQYLISELPQQILPTAQRLLDELLSSKTSQINMIAGAPDPTGGASAFEDAKWVLDEASLQENIKKILARFCGTLPYVMMDSNAAFLNSV-PPVSQEWSNLLRSFQGNDPEALWNLLNISRHLYAKE----PPHMSLPSTHVLS----------------------------------RHASAHLMEEIVHLWELTVMSPYLDKDTKLQMKLKFEIWNQQVIESGRKGQGQGIAFNSRMIKDFPGFNGPLEAAEIDWDVFYQVLGI 1458
            +  A+ SFPE+EE+IRLYSCLA+GS D+F++G+ L +   V D LQIGFHLS  V  P      K  +N+A+ FDR  +TSC C+C   A WC H  ALC++RI     V LR+PVSESL RL+RDQLQKFAQYLISELPQQILPTAQRLLDELLSS+++ IN + GAPDPT G SA + + W LDE++L +NIKK L +FCG  P V  D N+ +L+S  PP + EW+ LLR  +G +PE +WNLL+I R ++ +      P + + +   L+                                   HA A + +E+V LW L V+ P L    + ++  +   W  +VIE+ ++GQ         + + FPGF   +EA   +W+  Y + G+
Sbjct:  106 LRIAFWSFPENEEDIRLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATVVPPQ-MVPPKGAYNVAVMFDRCRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLTDNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCTQLRQWQLKVIENVKRGQ-----HKKTLERLFPGFRPAVEACYFNWEEAYPLPGV 495

The following BLAST results are available for this feature:

BLAST of TCONS_00028795 vs. Swiss-Prot (Human)

BLAST of TCONS_00028795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZSWM8	3.563e-99	43.18	Zinc finger SWIM domain-containing protein 8 OS=Ho...	[more]

You are here

TCONS_00028795 (transcript) - C. hemisphaerica