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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028798 ID=TCONS_00028798|Name=TCONS_00028798|organism=Clytia hemisphaerica|type=transcript|length=4217bpRun BLAST on NCBI protein sequence of TCONS_00028798-protein >TCONS_00028798-protein ID=TCONS_00028798-protein|Name=TCONS_00028798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=711bp MRQKSDDHIWGAYDEHTQSMNYYRDIPTPNQLSKPLVDAFCEWLKLVLRFRun BLAST on NCBI transcript from alignment at sc0000704:35265..69746- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028798 ID=TCONS_00028798|Name=TCONS_00028798|organism=Clytia hemisphaerica|type=transcript|length=34482bp|location=Sequence derived from alignment at sc0000704:35265..69746- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000704:35265..69746- >TCONS_00028798 ID=TCONS_00028798|Name=TCONS_00028798|organism=Clytia hemisphaerica|type=CDS|length=21360bp|location=Sequence derived from alignment at sc0000704:35265..69746- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028798 vs. Swiss-Prot (Human)
Match: KCNB1 (Potassium voltage-gated channel subfamily B member 1 OS=Homo sapiens GN=KCNB1 PE=1 SV=2) HSP 1 Score: 271.937 bits (694), Expect = 6.506e-76 Identity = 173/389 (44.47%), Postives = 256/389 (65.81%), Query Frame = 1
Query: 3025 RIKINVCGRRFQIQRQTVLRYPXXXXXXXXXXXXXSSHKETSTIPLYDDHDRETDEFYFERNPAAFEPILAFYTTGTLHIPRHLCVELFQDECDYWGIPFV-PDSCCQG-YHQQEWEISETVRKTNDLFESRSKRPSTNTEYLSSEIDLGPASRSEKLKRRLWDLFENXXXXXXXXXXXXXXXXXXXXXXXTLCVNTHPDVKIVNEDGQTQDNPKLLVIEIICIFWFTLEYIIRIYSSPSKKVFLCSVMNTIDLLAILPFYIGLIVENLNGGINDRFTDVRRFVQILRIFRIVRIFKVARHSTGLQVLGYTVRNXXXXXXXXXXXXXXXXXXXXXXVYYAEEDVENTKFVSIIAAFWWAIITMTTVGYGDMYPVTTFGQIIGSMCCVSG 4185
R+++NV G ++ +T+ R P TRLG++ + S + + DD+ + +E++F+R+P AF IL FY TG LH+ +C F E DYWGI + +SCCQ YHQ++ +++E +++ + R NT +EK +++LWDL E +SS AA I++IIS +++STI L +NT P+++ ++E GQ+ DNP+L +E +CI WFT+EY++R SSP K F +N IDLLAILP+Y+ + + N + +F +VRR VQI RI RI+RI K+ARHSTGLQ LG+T+R S +ELGLL + L MG+ +FSSLV++AE+D ++TKF SI A+FWWA ITMTTVGYGD+YP T G+I+G +CC++G
Sbjct: 32 RVRLNVGGLAHEVLWRTLDRLPRTRLGKLR-----DCNTHDSLLEVCDDYSLDDNEYFFDRHPGAFTSILNFYRTGRLHMMEEMCALSFSQELDYWGIDEIYLESCCQARYHQKKEQMNEELKREAETLREREGEEFDNT------------CCAEK-RKKLWDLLEKPNSSVAAKILAIISIMFIVLSTIALSLNTLPELQSLDEFGQSTDNPQLAHVEAVCIAWFTMEYLLRFLSSPKKWKFFKGPLNAIDLLAILPYYVTIFLTESNKSVL-QFQNVRRVVQIFRIMRILRILKLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDEDDTKFKSIPASFWWATITMTTVGYGDIYPKTLLGKIVGGLCCIAG 401 The following BLAST results are available for this feature:
BLAST of TCONS_00028798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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