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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028806 ID=TCONS_00028806|Name=TCONS_00028806|organism=Clytia hemisphaerica|type=transcript|length=1392bp
AGCATCTTACCTTCGTCTTGAAAACACCGACGGGGATGCTTCAGTCAACC
TTGCCATGGGAAAGTCCAGAGTTGCCCCTATTAAATATGTGACCACTCCT
AGAATGGAGCTTACAGCCGCCGTCTTGGCAGTTCGTATTGCGAAAATTTT
GCTTAAAGAGTTTACCTTCCCAGATTTAGAAACCTTCTTCTGGACTGACA
GCAAGGCAGTGCTTGGGTACATCTCAAATGAAGCCAGACGATTTCATACA
TTTGTAGCAAACAGGACACAGATGATTCGTGACAGCAGTGACATCAAAGA
TTGGTTCCATGTCAACACTGACGAGACACCAGCAGATGATGCATCCAGAG
GTTTATCAACATCAGATTACGATAAAGTCCATCGTTGGTTTCTTGGCCCT
CGATTCTTGAAGCTTCCCAAAAGTGAATGGCCAATTGGAACCGAAAAGTT
CGACATTGCATTGGATGACCCAGAAGTTAGGCTCAACgtcatgaaaacaa
aagttgcAACTCCTAACGATTCTATCACAAATCTACTCAATCGGGTATCG
TCATGGTTTAAAATCAAGCGAATCATTGCCATCATCCTCATCTGGCACCA
AAAGAAGCCAAAACCTCTGACCACTGATATTATCCAAGCTGCTGAGCTAA
AGATTATCAAACATCATCAACAAACACATTTCTATCACGAGATTCAACAG
CTTATAAAGGGGAAAGGAGTCAACAGAACGTCAAATTTATCAAACCTCAA
GCCGTTCGTCGACACTCATGGCACCGTACGAGTTGGTGGCAGATTGAAAC
AAAGTACAATCGAGTTTAACATCAAGCATCCAATAATCATCTCAAACAAA
GGTCCATTGGCGTCATTGATCATCAGATGGTATCACCAGAGAACAAATCA
TTGTGGTCGCATCATCACTATCAACAGCATCCGAACCGCTGGATTTTGGA
TCATTCACTGCACGTCCCTTGTCAAGAGTGCTATCTTCAAGTGTGTTACA
TGCAGAAAGATACGCTGGAAGCCCTCGATCCAACAGATGTCAGACCTACC
TGAGGATCGCATTGCCGAATCTGCGCCATTTACCTATTCTGGTGTCgacg
tatttggaccattcacTATCAAGGACGGACGTAAGCGCCCTAAACGTTAC
GGGCTTTTGTTCACGTGCTGTTCAAGTCGAGCAATCCATCTGGAGAGTAT
TCACACACTCGAAACAGATTCGTTTATCCAAGGATTAAGAAGATTGATCT
CGAGAAGGGGCAATGTGAGAGTTCTTCGTTCCGACCGAGGTACGAATTTT
GTCGGAGCCGACAACGAATTGCAAGCCTTATTCAGTCAAATGGACCACGA
TCGAATTCAATCGTTTATGCAAATCAACGGAGGAGATTGGCT Run BLAST on NCBI protein sequence of TCONS_00028806-protein >TCONS_00028806-protein ID=TCONS_00028806-protein|Name=TCONS_00028806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
ASYLRLENTDGDASVNLAMGKSRVAPIKYVTTPRMELTAAVLAVRIAKIL
LKEFTFPDLETFFWTDSKAVLGYISNEARRFHTFVANRTQMIRDSSDIKD
WFHVNTDETPADDASRGLSTSDYDKVHRWFLGPRFLKLPKSEWPIGTEKF
DIALDDPEVRLNVMKTKVATPNDSITNLLNRVSSWFKIKRIIAIILIWHQ
KKPKPLTTDIIQAAELKIIKHHQQTHFYHEIQQLIKGKGVNRTSNLSNLK
PFVDTHGTVRVGGRLKQSTIEFNIKHPIIISNKGPLASLIIRWYHQRTNH
CGRIITINSIRTAGFWIIHCTSLVKSAIFKCVTCRKIRWKPSIQQMSDLP
EDRIAESAPFTYSGVDVFGPFTIKDGRKRPKRYGLLFTCCSSRAIHLESI
HTLETDSFIQGLRRLISRRGNVRVLRSDRGTNFVGADNELQALFSQMDHD
RIQSFMQINGGDW Run BLAST on NCBI transcript from alignment at sc0000704:175238..176629 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028806 ID=TCONS_00028806|Name=TCONS_00028806|organism=Clytia hemisphaerica|type=transcript|length=1392bp|location=Sequence derived from alignment at sc0000704:175238..176629 (Clytia hemisphaerica)
AGCCAATCTCCTCCGTTGATTTGCATAAACGATTGAATTCGATCGTGGTC
CATTTGACTGAATAAGGCTTGCAATTCGTTGTCGGCTCCGACAAAATTCG
TACCTCGGTCGGAACGAAGAACTCTCACATTGCCCCTTCTCGAGATCAAT
CTTCTTAATCCTTGGATAAACGAATCTGTTTCGAGTGTGTGAATACTCTC
CAGATGGATTGCTCGACTTGAACAGCACGTGAACAAAAGCCCGTAACGTT
TAGGGCGCTTACGTCCGTCCTTGATAgtgaatggtccaaatacgtcGACA
CCAGAATAGGTAAATGGCGCAGATTCGGCAATGCGATCCTCAGGTAGGTC
TGACATCTGTTGGATCGAGGGCTTCCAGCGTATCTTTCTGCATGTAACAC
ACTTGAAGATAGCACTCTTGACAAGGGACGTGCAGTGAATGATCCAAAAT
CCAGCGGTTCGGATGCTGTTGATAGTGATGATGCGACCACAATGATTTGT
TCTCTGGTGATACCATCTGATGATCAATGACGCCAATGGACCTTTGTTTG
AGATGATTATTGGATGCTTGATGTTAAACTCGATTGTACTTTGTTTCAAT
CTGCCACCAACTCGTACGGTGCCATGAGTGTCGACGAACGGCTTGAGGTT
TGATAAATTTGACGTTCTGTTGACTCCTTTCCCCTTTATAAGCTGTTGAA
TCTCGTGATAGAAATGTGTTTGTTGATGATGTTTGATAATCTTTAGCTCA
GCAGCTTGGATAATATCAGTGGTCAGAGGTTTTGGCTTCTTTTGGTGCCA
GATGAGGATGATGGCAATGATTCGCTTGATTTTAAACCATGACGATACCC
GATTGAGTAGATTTGTGATAGAATCGTTAGGAGTTgcaacttttgttttc
atgacGTTGAGCCTAACTTCTGGGTCATCCAATGCAATGTCGAACTTTTC
GGTTCCAATTGGCCATTCACTTTTGGGAAGCTTCAAGAATCGAGGGCCAA
GAAACCAACGATGGACTTTATCGTAATCTGATGTTGATAAACCTCTGGAT
GCATCATCTGCTGGTGTCTCGTCAGTGTTGACATGGAACCAATCTTTGAT
GTCACTGCTGTCACGAATCATCTGTGTCCTGTTTGCTACAAATGTATGAA
ATCGTCTGGCTTCATTTGAGATGTACCCAAGCACTGCCTTGCTGTCAGTC
CAGAAGAAGGTTTCTAAATCTGGGAAGGTAAACTCTTTAAGCAAAATTTT
CGCAATACGAACTGCCAAGACGGCGGCTGTAAGCTCCATTCTAGGAGTGG
TCACATATTTAATAGGGGCAACTCTGGACTTTCCCATGGCAAGGTTGACT
GAAGCATCCCCGTCGGTGTTTTCAAGACGAAGGTAAGATGCT Coding sequence (CDS) from alignment at sc0000704:175238..176629 >TCONS_00028806 ID=TCONS_00028806|Name=TCONS_00028806|organism=Clytia hemisphaerica|type=CDS|length=1389bp|location=Sequence derived from alignment at sc0000704:175238..176629 (Clytia hemisphaerica)
CCAATCTCCTCCGTTGATTTGCATAAACGATTGAATTCGATCGTGGTCCA
TTTGACTGAATAAGGCTTGCAATTCGTTGTCGGCTCCGACAAAATTCGTA
CCTCGGTCGGAACGAAGAACTCTCACATTGCCCCTTCTCGAGATCAATCT
TCTTAATCCTTGGATAAACGAATCTGTTTCGAGTGTGTGAATACTCTCCA
GATGGATTGCTCGACTTGAACAGCACGTGAACAAAAGCCCGTAACGTTTA
GGGCGCTTACGTCCGTCCTTGATAgtgaatggtccaaatacgtcGACACC
AGAATAGGTAAATGGCGCAGATTCGGCAATGCGATCCTCAGGTAGGTCTG
ACATCTGTTGGATCGAGGGCTTCCAGCGTATCTTTCTGCATGTAACACAC
TTGAAGATAGCACTCTTGACAAGGGACGTGCAGTGAATGATCCAAAATCC
AGCGGTTCGGATGCTGTTGATAGTGATGATGCGACCACAATGATTTGTTC
TCTGGTGATACCATCTGATGATCAATGACGCCAATGGACCTTTGTTTGAG
ATGATTATTGGATGCTTGATGTTAAACTCGATTGTACTTTGTTTCAATCT
GCCACCAACTCGTACGGTGCCATGAGTGTCGACGAACGGCTTGAGGTTTG
ATAAATTTGACGTTCTGTTGACTCCTTTCCCCTTTATAAGCTGTTGAATC
TCGTGATAGAAATGTGTTTGTTGATGATGTTTGATAATCTTTAGCTCAGC
AGCTTGGATAATATCAGTGGTCAGAGGTTTTGGCTTCTTTTGGTGCCAGA
TGAGGATGATGGCAATGATTCGCTTGATTTTAAACCATGACGATACCCGA
TTGAGTAGATTTGTGATAGAATCGTTAGGAGTTgcaacttttgttttcat
gacGTTGAGCCTAACTTCTGGGTCATCCAATGCAATGTCGAACTTTTCGG
TTCCAATTGGCCATTCACTTTTGGGAAGCTTCAAGAATCGAGGGCCAAGA
AACCAACGATGGACTTTATCGTAATCTGATGTTGATAAACCTCTGGATGC
ATCATCTGCTGGTGTCTCGTCAGTGTTGACATGGAACCAATCTTTGATGT
CACTGCTGTCACGAATCATCTGTGTCCTGTTTGCTACAAATGTATGAAAT
CGTCTGGCTTCATTTGAGATGTACCCAAGCACTGCCTTGCTGTCAGTCCA
GAAGAAGGTTTCTAAATCTGGGAAGGTAAACTCTTTAAGCAAAATTTTCG
CAATACGAACTGCCAAGACGGCGGCTGTAAGCTCCATTCTAGGAGTGGTC
ACATATTTAATAGGGGCAACTCTGGACTTTCCCATGGCAAGGTTGACTGA
AGCATCCCCGTCGGTGTTTTCAAGACGAAGGTAAGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028806-exon-sc0000704-1491911889:175238..176629 | TCONS_00028806-exon-sc0000704-1491911889:175238..176629 | Clytia hemisphaerica | exon |
| TCONS_00028806-exon-sc0000704-1510915933:175238..176629 | TCONS_00028806-exon-sc0000704-1510915933:175238..176629 | Clytia hemisphaerica | exon |
| TCONS_00028806-exon-sc0000704-1575043694:175238..176629 | TCONS_00028806-exon-sc0000704-1575043694:175238..176629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000704 | supercontig | sc0000704:175238..176629 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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