TCONS_00028808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028808
Unique NameTCONS_00028808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028808 ID=TCONS_00028808|Name=TCONS_00028808|organism=Clytia hemisphaerica|type=transcript|length=2994bp
tttgaatagaaatactttccATTTGGAAATGCTTGCTATGTTTACAAACA
GCCAGCTAATCTTTAATGTACTTATTGTCCCTAAAATAGTGCAATTGAac
tttcaaataaatttatcgGGGAAATCGGGTTTGTTATCTCCATCATTTCG
TGATAACAGCTTTTATCTCTTCATTAAAGAGAGGATATGTTCATGGCCGA
CTTGCGTAGCTGTGCTCGGCATTTGactcaaaaaaagttttgtgaatatt
gcaacatgaaaacatattATTGTTTATGGTGAAAGTTTTGAGGTGTTTCA
AGTTTTTCTCGCTCTTGCTAGAGCAAAGTAATTCAAAGGAGTAATATAAT
TGGTTGGATATGGAACTCAAATAAAGTTACATTTTCCAGTTGTTTGGACT
ATTTGATTGTGAAAATTATTGTCATGTAAAGTAGGAAAATGAGTGGAAGG
CAAAGAACAACTTCTCTAGTAGACCCAACTGGAAGAAACTCCTCTCCTGG
ATCACATGGTGGATTTAGGATCACTCGAGACAAAGATGGAGGAACTGTGA
CGACAGTACTTGCAACAACTGGAGCATTACCTGACACTGCAGAAGAAATC
AGttattcaaataataaagtgaTTGGGAATGGCTCTTTTGGTGTTGTATA
TCAAGCAAGACTAGTGGACTGTAATGAActtattgcaataaaaaaagtgC
TGCAAGATAAACGGTTTAAAAATAGAGAACTACAGATTATGCGGAAATTA
GATCATTGTAATATTGTGAAGCTCAAGTATTTTTTCTACACAAGTGGTGA
AAAGAAAGAAGAAGTATACTTAAATTTGGTGCAAGAGTTTGTTCCAGAAA
CTGTTTATCGTGTGGCAAGACATTACTGCAAGAATAGACAGACACTTCCC
TTGATATATATTAAGctgTATATGTACCAGCTGTTTCGTGCACTGGCGTA
CATTCACTCATTAGGGGTATGTCACCGTGATATCAAACCACAAAATTTAC
TACTGGATCCGGACACAGCTGTATTGAAACTTTGTGACTTTGGAAGTGCA
AAGATTTTGGTAGCTGGAGAACCCAACGTGGCTTACATTTGTTCCAGATA
TTACCGAGCACCAGAACTAATATTTGGTGCCGTTGATTATACAGTTAATA
TTGATACTTGGTCAGCTGGATGCGTTTTAGCAGAACTTCTTCTTGGCCAA
CCTATCTTTCCTGGTGACAGTGGTGTAGACCAACTTGTTGAAATCATCAA
AGTGTTAGGGACACCAACGAGAGAACAGATACGTGAGATGAACCAACATT
ATACAGAATTCAAATTTCCACAAATCAAACCACACCCTTGGTCGAGGgtt
ttccgtGCAAGGACACCGGCAGATGCAATTTCTTTGACATCACAACTATT
GGAATATACACCTGGCAGCAGATGCACCCCACTTCAGGCTTGCGCTCATA
AGTTTTTTGATGAACTACGTGAACCTGGAATCAAACTTCCAAATGGGAAG
GAGTTACCAAAACTCTTCAATTTCTCTGCACAAGAGCTTTCACAGAATGC
AAATTTACAGAGCGTCTTGATTCCAGAACATTTTCGCAACGCAACCAGCA
ATAACACAACCACATCTTCAAGCAACAGTAATTCCAACACTTCCAACAAC
GCGACGTCGACCTCACAGAGTAGCAGCACTTCACAACAAACTTCTAGTGC
AGTTGTCTCGACTTCTGCATCATGATTTGAATGGAATTTCGATGGCCATC
CTTTCCAAATCAGTCAATCAACGTAAATAAACAAAGTCGTAACTGCTACG
AACTACACCAATGTAGATTTATGTtgataaaagaaaagttttttatttgg
aAGAAGTTTGGTGGAAATTGTTGAGAAAACGAAAGGGAGCTGGTCGATAT
TGCTCTTTAACGAATAATTAGGTTGAGCTTTTCCTTTCGATACGTTTTAA
AGCTCCATTTTCTGTCTCGTTGATGAAAAAGCCTCACAAGATTCTCAACA
ACTAAGCTCCTAATCAATTTGAGTTTAcaatgaaaagtttttcatgGATC
ggtctttttttatgagatcgTAAACTTTAGCGTGTTCctaaatttattgt
ttttaaaaatagattttatacAAACAACCAGTCTATCTTATTGGTAGTCC
TTCTGCAAAATGCTGACAAATTTTTCCCTCAATTATGCACACAGGCAGAT
AAGTCTTCTATCACAATCTACCAGTCATCAATTTGTcagaattttagatt
tttattcgTCTCTGTGTATCactgttgtttttttgttatttcctCACCAT
TCTTCAAGTCTTGTGACCAATCAAACATCTGGTTATGGAGATTGATTACT
TTGACTTTTtgctaaaataattttcagtacAAAATCCTTtgtttatgctt
gggtaatcgAGCTTTGTCTTTAATATGGTAGAATACTTCTAAACACTCAA
CAAGTACTGaaataattttatcaaaattagattttcctggacttaaaaac
aattatatttaaCAGACCTCATGCAACATTTTCTAGGATTAGTAGGAACA
AAAAATTCCCCTTTccatttgtaaatttgtttataaaatttctCTGGCGT
TTTGCGAACAATTATCCTTTCAGCATTTTGACAATTGCACAAGTAGATCA
GCTTTTGAGTAACCTTTTAAAATGGAAAAAGCGTTTTTATTAATTAACAA
CTATTCTTCGCAGAAATGACTAGCATTTTTCCAGGTCAATTTATTCATTG
TAACAAGatgaaaattataaattatgTTGTATTGTAGAGAAtaccatttt
tccaatttaacAATTTAATATTCTCTTTTAGTTTGTTTAtcgttttttta
tcttttttttctgtttttgcttGTCCTACTCACAATGTACATAAGCTatt
aaatgaaataaaagttgaccccaaaataaaaaaaagctgTTATCCCGTTC
CGTTCTCCTCTACTTTCCAATCTTAGATTGAACCAATGAATGAC
Run BLAST on NCBI

transcript from alignment at sc0000705:10009..24431-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028808 ID=TCONS_00028808|Name=TCONS_00028808|organism=Clytia hemisphaerica|type=transcript|length=14423bp|location=Sequence derived from alignment at sc0000705:10009..24431- (Clytia hemisphaerica)
TTTGAATAGAAATACTTTCCATTTGGAAATGCTTGCTATGTTTACAAACA
GCCAGCTAATCTTTAATGTACTTATTGTCCCTAAAATAGTGCAATTGAAC
TTTCAAATAAATTTATCGGGGAAATCGGGTTTGTTATCTCCATCATTTCG
TGATAACAGCTTTTATCTCTTCATTAAAGAGAGGATATGTTCATGGCCGA
CTTGCGTAGCTGTGCTCGGCATTTGACTCAAAAAAAGTTTTGTGAATATT
GCAACATGAAAACATATTATTGTTTATGGTGAAAGTTTTGAGGTGTTTCA
AGTTTTTCTCGCTCTTGCTAGAGCAAAGTAATTCAAAGGAGTAATATAAT
TGGTTGGATATGGAACTCAAATAAAGTTACATTTTCCAGTTGTTTGGACT
ATTTGATTGTGAAAATTATTGTCATGTAAAGTAGGAAAATGAGTGGAAGG
CAAAGAACAACTTCTCTAGTAGACCCAACTGGAAGAAACTCCTCTCCTGG
ATCACATGGTGGATTTAGGATCACTCGTGAGTAGCATACTTTTCATATTG
TTAGCATCACACGCATTGCAAAATTTACGGTGAAAACAACTTTACAATCC
TGCAATTCTGTCGATGCACCAGACTCTGGTGTTTTTGTTCAGTTCTAAAA
AGTATTATCAAATTACACAATTAAACTGTCCACTGTCAATGTAGCTGGAA
CCTCGATATTCCAAGATTAGAAAAAGCTATACCTGTTAATATCTTTTTTC
TATAAAGAATCAACAAGCCATCATCAACATCGATAAATTACACACATTTC
CTCAATGTACTTTTAAAATTATCTGCCATTATGACTTTCTTGAAGCTGTT
CCGAAAGTAACCAATCAAGTTTATGTATCTGAATTCCTATGGCAGTGAGG
CTGGAACTTCGATTTTTGAGGATTACGATTTTACCAGTTTTTTAGCGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGATCGATTCTCAAC
AACAAAATACACCTTTTGGTCTTTGGGTTTGTTTCTGACGTTTTTCCTTC
AAAGAATATCGATCACTTTCCTTTTCCCCTTGATCGCGCGAGAAAAAAAT
GATTAGCTCGCGTTTTCGCGCGCGCGAATAAAGATGAGGCGGCGTTCTTG
CACTGAGGGTGCTACTTAGTTTCCGCCCTATTTTGCGCCCACGATAGAAT
GGTCTTAAACACGGGGGTATTCCAAATGATAAACTATGTCGTTCTGTAAG
TGTTTATTTTTTAAGAGATACAAATAGTATATTGAATATTATTAACTTAT
TTATTTAAGTATTCTTGAGTGCAAATTTAAATATATGGTTAAATAAAAAA
CAAATAATAACAGTTCTGTTTATTCCTCAAACCCCCGGAAAAGATTTTTT
GCAGACTTAGCTATTTTACAAATCTCGGAAAAGAACTCCCATAGGAATTC
CGATACCTAACCCGATTGGTTAATTTCGGAACGGCTTCAAGAAAGTCATA
ATGGCAGATAATTTTTAAATTTTCTGAGGAATTGTGTGTAATTTATTGAT
GTTGATGGCTTGTTGTTTCTTTAAAGAAAAAAGATAACAGGTATAGCTTT
TTCTAATCCTGGAATATCGAGGTTCCAGCTACACTGTATGGGAGTTCTTT
TCCGAGATTTGTAAAATAGCTAAGTCAGCAAAAAAACTTTTCCCGCGGGT
TTGAGGAAAAACAGAACTGCTATCATTTGTTTTTTATTTTATAACCATAT
ATTTAAATTTGCACTCAAAAATACTTAAATAAATAAGTTACTAATATTCA
ATATACTATTTGTATCTCTCAGAAAATAAACACTTACAGAACGACATAGT
TTATCATTTAGAATACCCCCGTATTTGGACCATTCTATTGTGGGCGTAAA
ATAGGGCAGAAACTACTAAGTAGCACCCTCAGTGCAAGATTGCCGCCTCA
TCTTTATTCGCCCGCGCGAGAAAAGGAAAGTGATCAATAATCTTTGAAGG
AAAAACGTCAGAAACAAACCCAAAGACCAAAAGATGTATTTTGTTGTTGA
GAATCGATCCTGTGAAGATGAAAAAATTTCTGCTAAGTGCTATGTGTTTT
TTTCGGAACACTGAAAAACTCTAATTTCGATCTTCCTTAAGGTAAAGAGG
TTGCAAGATTTGGGTTAGTGAGGCAAAAATCGCTAAAAAGCTGGTAAAAT
CGTAATCCTCAAAAATCGAAGTTCCAGCATCACTGACTGTTTATCCAGGG
TTGTATAGCCCAGAAACCTGATGACGAAAACCTGTTGGCTAGTTCCAATT
TTCTTTGTTTTATGAAGACGATTGCTTCACTTTTAGCAGCAATGGTCACC
AGGAGAGTCGCTCCTCAGTTTCTGAGCTTGTATTTTGATTAGCTTTGAAA
AGGTTTGGTGAAATGGTAGCCGAATGTCCCATGGTAGCCGAATGTCCCAT
GGTTTGTCAGATAGTCCCAAGTTAGAGCTGTTGATGATAACTTTTCGTAG
CAAATTTTGCCTTTGCCCTTTAGCGGGCACTGAACGCGACCGGGTGATTT
TTTTAACCTCTTCCAATCTTTTGGGTTTTAATTGATATATAACATCTGTA
CCTACACTTTTCTATTCAAGCTGCTCTTATATTTGTGGGGTGAACCAAGC
AATTGAGGAGAAAAGTGTTGCAACCAGTTATTTTGATTGGCACATGTTCT
TTTTGAGTGTTCAGCATTACTGTCTTCATTTCATTCCAGAGGTTGTTTAT
TTGGTGTGTCAAGGCTTCAATATGTGTTCTGTCAGGCTAGCTCTAAAGCT
CTAAAACAGCATCTATAACATGAAAACCAGAATATGATTATTCAATGGGA
ATCAAAACTATAAAGTGCACTTACAAACATCAATATATCAGATCTAACAA
AATTAATAACAGCACTGTCATCATTGACAATAAAACAAAGGATTTTCTGT
CAAGAGTCTTGTAAACATTCCAACAACTTCCATCGAAATGATCTGTCATA
GCTGAGTCTACCATTTTAACACGGTCCAAGGATTGAGCCAAGAACGCGCA
CAGAATGCCTGCGAGCTCCCGCGCGGGTGAAAAACTTTAATCTGTAAATT
ATCTTCTCAAGCGAAGCAGAGCGAAGCAGAGCGAAGGAGTATGCCAAGCG
ATTCTAGCTTTACGGTAGTGCTGCGGATCATCAGTGGATAGTATTCAATT
ATCATTATCCCTTTATTTTCATTCCTAGAACTTTTGCAAAAAAAAGGAAA
AATAGAAAAGTTATATTTNNNNNNTTGAAAGATCTTCTATGTGGCGTTTT
TTTGCAAACTTCAAAAAACTGATTTTTGTCCTGCCTTTGCGGGACTTTGG
CTTAAGTGCTTGTGTGCAGCATAGGGTACAAAGTCCAAATATGCGTTTCC
CGTAATTTTTGTATGAAGAGTTAGGTCTATACTGTCTGTTCCAACAGTCG
ATAACTTGTTTGTTGCGTTTAGGGCAGTCAGAATGTATCCGCAAGAATTC
CAGAGTTATGCTCCCTAGTAATGTGTTGAGTGTGTTTTCTAAGCATGTGG
GAAAGTGTACCAGCTGATGCTGACTTTTCTAGAAATTTTTCACTCAATGC
TTTTGAATATTAATAGCTTGTGATACTGCTATTTGAAGGGGAATTAAGGT
TTCTATTTTACTGCTACATTTTTGGACCTACCCCGGTGGAGGTCCTATAA
ATTAACCTGTGTTAGTTCGTTCGTCCGTCCGTTCGTTCGTCTGTTCGTCT
GTTACAAATTTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGT
ACAAAGGTGCAAAATGGTGGTGGCCAAAATGTGACGGAGCCCAATTTTCG
AAAAAATAATTTTTTTGGCCAATTTGGGCCAAAAAACGGCTAAAAAACGG
GTTTTTTAGACTTTGTGAAAAATCGGGTCATTTATTTTTTCTGATTTTTT
GTATGAAAGTAGGGTACCATCATAGGTAAATGATGGCTCAAGCAGATTTT
CGCAAAAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATC
ACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTTTT
TATGAGATAGATGTTTTTTTTGCTCATGAGGGCTTACTTTTAGAGGGTAT
GTGTGTTTAGACATGAAATTTTGGTTGCTTAGCGTGTTTTTATAGAAAAA
CTTGCCGAATTCGGTATTTTTTTATAAGCACATTATCAATTACTTAGGTA
TTAGCTTTTCTTGAGATTAGCTCTTTCATTTTTTATGATTTTTTGCACAA
AGATGCATAACTTTAAACCCTTAAATGTGACGGAGCCCGATTTTCGAAAA
AAAATGTTTTTGGTCAAATTTGGGCAAAAAACGGCTAAAAAAAAGGGTTT
TTTGGACTTTGTGAAACATTGGATCATTGTTTTTTTCTGATTTTTTACAT
GAAAGTAGGTAAAAGATGGCTCGAGCAGATTTTTGTAAAAAAAAGAATTT
TTCAGCTAAAAATACGCATCTTTATTTATAAGAATCACTATTAATAAGCA
TACACCAATGTTCTTAGCCAAATTACTCAATTTTTTAATAAGAAAGATGT
TTTTTTTTGCTCACGGAGTCCTGAATATGAAAGATTATTTCAAGAGCATG
AAATTTTGGTTTCAAGACGTTTTTTTTATAAGAAACAAACGACTAATTTT
AATAGATCGTCACTATTTCTGTTCTGAATGATTGTTTGACGGTCATGCTC
ACGTAGATATCAATTATATTTGTTAAATGCATAACCAGGTAGGTCCATAA
AAGTATCACTTGTTTTGCATTGGATTGAAAAGAATTAAACATGCATTCAA
ACAAAGAAAGAATCATCAGTCTATCACAAATGTTGATATTCAAAAAACTT
AACATCCTTACAAAAGTTGTCTTTTTTATTTCCCATACATTCGTTTTATT
TTAAGAGTCACTTCCACAATAATTTATGTAATTACTCTTTCGGTCAGTCC
ACAGTCGGGTTCAATATATACGCATGTTTTTAGTGACGTGACTGAAGTGC
CTACTACTTGGCATTGACAATCAAATATAATATATTACATTATATTTCCA
TAATTCATTTTGCATTTGCAAATAATAAAGATAAAGAAATGATTAATTAA
TATCACATACTAAAACGCTCCTGTCTGGTCTAATTTCTGATCTCAGAGCA
TGCAATACGCCCGTCTGCCCAGNTTTACTCTCGTCTAATTTCCAATCTCG
GAACGTTCAAAAACGCCCGTCCGCCCAATATCCACCCAATCATCTTAAAT
TCACTTTAATTGTCCTTTGACTTTCAAAAAATAGTATTTAAAAACTATGA
ATTTATGATAATTACAAAAAACAAAAAGTTTGAGACTTCATTAGTGAAAT
ATTCAATACATTCCTAATTTCTGTGGGCGTTTTTCTAGCGCTTTGTTTGT
CGTGCTATTTTTGTGTCACACAAACTTTCTGCTCGGCCGCTTGTAAGAAT
TATGCATTGCCAAATTTGGTTCTCCATTGTCAAGTCAAGATCGATGGTGA
CGTCACCTAAGAATAAAAAAGAACAGAAAAGAAAGGATTTCGTCAGTTTT
ATGCATACAGCACCTAACCCCAAGAATGTAGGTGAAATTTGAATCAGACC
TGAAAGATGTAGATTTGCATTTTAAAAAACATTGAATGTTTTCAACGAAA
TTTGGAACTCCCAAAATCCTTTCCCAGGGGTTAGCGGAATTTCAGTATTC
ACCAGAAATCTTTGTTCTGTAAGTGAAATTTATGCTTTAAAAATGTATTC
TGACAAAGATTTAACAAAGATATTAATTTTATCGTGCTACAAATGAGGAA
AAGTAAAAGAAAGAACTAAAAGAAGAGACAAAAAAGTTGTATTTATTTTG
TGGGTTGAAAATTTTGTGCTGATATATGTGAATAATGTAACAACACCCCT
GCCTCACAGTACCGCTGGAACCTTTTCCCACATGGGGACAAAAATTTCTA
CTAAAGTCCCAATGGGGATAGAAATTCTATTGTTCAAAAGTTTGGCAAAT
TTTCTGATTGGACTTGGGTCCCAGCGGGTCTGTGACATGTTGTAAAAGCT
CAAAATGTCAACATCAATCATCTCTCAGGTAGTACTTTCATGTTATGAAA
GTACAACAAACAAGTTTTAAGTAATTTGACAAACTTTTTTATATCGGGTT
ATGAAGACCCCAAAATTGAAGGTCAATTAACCCAAAAAAGTAGGTCAAAC
ATTTTTGTCAAAATATCTAACTTGGAACAATAAATCTTGTAATGGACTAT
TTTCCTCATTTACTTTGCTCATGAGTAAGAAAATACCTTATCATCATAAC
TTAATTCCAATAGATTTCGATTTATTTTAAAAATGCCTCAATTCGGGTAG
TATTCAATCAACTGCGATTCAGATTTTTATACAAAAAGAATTAACTTAAA
CTAAAATTTAATGTCTAGAAATAATGAGTAATTATGCAACAGTATCCTCT
GAAACAACTTTTTATGAAGTTGAACTATCGTTAGGCCTACAATGCTAATA
AATGAGAAACCTACATTCTCGGGGTTTACTACATTCTTGAGGTTTACTAC
ATTCTCAGGGTCAGGTGCTGTACATTAATTTGCGAGATTTCCCATTCGCA
GCGCAAGCGCACTTTTCGTAGACTAGTCGTAATACCTTTTTTTACTCGCG
GGATCGATAGTAATTTTTCTAATGAAGCACAACCGAAAAAGTGAAACTTC
AGAAAGTTGCTTATTTCCAGGGAGTAAACAATTCTAACAATTGACAAAAT
TGATGATGATGAATTTTTTTGGTCAGTCAAATGTCTCGTATTGGGGGTTC
TAGTCTTGAGCCCTAATTCTATGCAAGATTGCAGCATTTGGGTAAACGAG
ACAAAACTAAAAAACAGCTGGCTTTTTGGTGCGCTTTCGCGCGAACAAAA
TATTCCACTTTGTGACGCACTGATCATTGAAAAACCTTTTTTGTTTGCTG
AATTATTCAGCCATAAAGATTTTTTGGCTTTTCCATGATAAAACACTCCC
CCTTATAGTAGGGCTAACCTTTGTGCTCTGTAGAACCTTTCGTGGGGTCT
GGTGGGTTGCAACGGCATGTTTTGGTTTGAAAGTAGATATGATTTTGAAA
CTTTCAGAGGGGGCCCCTAACTAAAATAGGCAAAAAATTGACAATTTTTC
AAAGTTTAATTAGACAGAAATGATTGATACCGTTGAATGGAACATGAAAG
TCTGAACAAAAAATTATACGCAAACATTATAAACAAATACAGGCATTCAA
GTTCAAAATTCTGTCAGTTAGAGTACAATGTCAATTCTAGACTTTTCACC
AGAGTCATTTTCAAATTTCAAATCAACCAACAAGACTGTCACATTTGATA
CAAAAGAAGACTTATGGAATCTAAAAAATATGAAATATTCTTATTCATAA
TTTGTGTCGTACACTCAACATACAATGTCTATTTTAAAGATTTTAAAGAT
CGCTTTTCATTCAAGTCATGAAAACTACACCAAAATTATAACTTTAGGAA
GATTCAAATTGTAGGTTGGTAGAGTTTTCCTTAGACCTGAAGCCAGGCTG
ACACTAAAAAGGAAATAAATATGAAATCTTTGTTTTATAGGAGACAAAGA
TGGAGGAACTGTGACGACAGTACTTGCAACAACTGGAGCATTACCTGACA
CTGCAGAAGAAATCAGTTATTCAAATAATAAAGTGATTGGGAATGGCTCT
TTTGGTGTTGTATATCAAGCAAGACTAGTGGACTGTAATGAACTTATTGC
AATAAAAAAAGTGCTGCAAGATAAACGGTTTAAAAATAGAGAACTACAGA
TTATGCGGAAATTAGATCATTGTAATATTGTGAAGCTCAAGTATTTTTTC
TACACAAGTGGTGAAAAGGTAAAGTTTCTTGCATTAAAAGATCACTTGAA
CAGTGGGTGGCACTCATTTTGAAATTTGGGGAAGAATTAAAACTCTGAAA
AAAATGATTAACTAACAAAGAATATCAAAATACATCAATTTCTGGTGTGG
TTGAGCACATCCCTTAGAGATTTCAGGTATATTAGGAGGCTAGTGTGTGC
TATCATGCACCCAAAATGATTTAGTCTACCCTAGAAACTTTTGTATATGA
TTTTATTGGTATGAGCACGATGATCGAATGATGCATTCTTAGGCTTGGTA
AGTGCCTTGTTCTTGTCCTTGTAGTCAAATGTGATGATTATAACACTTTT
TTTATTCTTCTCTTAAATTTTAGAAAGAAGAAGTATACTTAAATTTGGTG
CAAGAGTTTGTTCCAGAAACTGTTTATCGTGTGGCAAGACATTACTGCAA
GAATAGACAGACACTTCCCTTGATATATATTAAGGTTTGTATTACTCCGT
CTAACTTGTGCAGGATGGATTTTTATTACCATTCATTGTTTTGTGCCTTG
CTTTTTTAAATAAAGTCTCAAACCTTTCAAGAAATCTGGAGTCGGCAAAA
AATATTGTTTGATGTTAAAAAGTTCTTCAACTTTGTCTAAAAAGCTCTTC
AACTTTTTCTATTGCTTAGGTTTTTAACCAAATAGATTTAACAAAAATTC
CGATTCAACACTTTTGTTGTTTTATGTATGCTGATAGCGCTTCTTGCTTT
ACAGAGCAAAAATTCTTACTGAACTGTTTCTTTCTCAACTAATTTTACCA
CAGGATATATTATCACACTACAGAATGATGCATTTGAGCAAGTCCTTTTT
TACGAATGCAATGTTAATAGAGAAGCTAGCAATAAGCAAAAAGCTCGTCC
CAGCTGTTGAAAAAACTATTTAAAGCACTATAGCTCTCACCAATTTTGAA
AATTAGATATTCAGAATCTATTTAAAATTTTGCTTTCAATGATATATAAC
ATCCCGGGGTTTTGTGAATGTGCTGGAAAGATATTGGTTCTTGAAAGGTT
AATAAATGGTCCATTTTGGCCCAAAATTTGATGAAACAGTGAAAATCACA
AATATGAATAATATATTTTCTCATCTTATTTCAACATGTTGTCATCAAAA
TTGTTATTAAATCTTTCCTAAGGCATGTATTTTCCAAGATCAAAAATCAT
ATACTGAAAAATTAGCACTGTTTGAAAAAAAATGGACATTTTTGGAAAAC
AATTAGGATGAAACATTTTTGAAAAAAATCTGTTAATATTTTTCCCTTGA
CTATTTCTAAGGCATGACTAAGTCTAAAATTAAAGTTTGATAGCTAAATA
TCATCAGATGACTTGTTTGAACATGTCATATAAATATCAAGTTGATTGAT
GAACAAGTTTTGGAGAAAAGATAATTTTAAAACGCCGACCTGGATTTTCC
GTCACAGCGCAACACAAACTTAAAAGTGCACTAAAAGATTACCTTGGTGT
TTTTAAGTGAATTCTTTTAGTGATTCTCAACAGCCCTATAGGTCTAATAT
TTTAAACATTTAAAAACTGAAAAAATTCTGCTTTGTTCAAATTTTTTTTT
TTAATAATGATTTTCCGTCACGGCGCAACAAAATTTTAGACCCCCAAAAA
CTTCATTGGACAACTGAAATGACTTAAACTCTTCAGTAACATCCAAATTA
TCAATATTTAAAAACATTTGGTAAGGTAAACTACTTTGTAGCCTTTATAT
GCCCATTTTGAAAAAATCTTGATTTTTGTTAACTTTCCAGGGATTTTAGC
CCAGAAATCGGAAATTTTGTCATAACCTTTCAATGGAGCATGTTCCTGCT
CTGATTTTTTCACAAACTATTCATGAAATGATATCCTTTATGTCTATAAA
AAATTTTGACTTTCTGAAAACTTCATTTTTTGCCATTTTTCAGACTTTTT
GGGACGAGCTTTTTGCTTATTGCTAGCTACTGAAGAACTAACCCTCTTTT
TGGACCTACCGCCGGGTGCCCCGGTGGAGGTTCTATAAATTAAGCCATGT
CCGTCCGTTCGTTCGTTCGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTC
AGGATTGGCTCATTTGTTTTTTCTGATTTTTTGCACAATGATGCAAAATN
NNNNNNNNNNNNNNNNNNNNNNNNNNCACAATGATGCAAAATGGCAATGC
CCAGAACGTGACGGAGCCCGATTTTTGAGAAAAAATTTATTTGGGCAAAT
TTGGGCCAAAAACTACCTAAAAATGGGGTTTTTTGGACTTTATGCAAAAT
CCTGTCATTACTTTTTTCTGATTTTTTGTACAAAGATGGAGGGCAAGATT
CTCTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTCTTATTCGCATT
AAAAAACGGATTTTCGTATTTTGGGGAAATAAGAAAATATAGCTTTTCTC
AAAGTTGACTCATTATTTTTTTCTGATTTTTTGCACACTGATGCAAAATG
GCAATGCCTAAAATGGGACGGAGCCCGATTTTCGAAAAAAAATATATTTG
GGCAAATTTGGGCCAAAAACTACCTAAAAATAGGGTTTTTTGGACTTTGT
GCAAAATTCTGTTATTACTTTTTTCTGATTTTTTGTACAAAGATGGAGGG
CAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTCTTAT
TCGCCTTAAAAAACGGATTTTCGTATTTTGGGGAAATTCCCTTTAACCAA
ATAAGAAAAAATAGCTTTTCTCAAAGTTGACTCGTTATTTTATTCTGATT
TTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGACGGAGCCAGA
TTTTTAAGGAAAATTTTTTTGGGCAAATTTGGGCCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTATAAAAATTTTTGACTTTCTGAAAACTTCATTT
TTTGCCATTTTTCAGACTTTTTGGGACGAGCTTTTTGCTTATTGCTAGCT
ACTGAAGAACTAACCCTCTTTTTTATTTTAGCTGTATATGTACCAGCTGT
TTCGTGCACTGGCGTACATTCACTCATTAGGGGTATGTCACCGTGATATC
AAACCACAAAATTTACTACTGGATCCGGACACAGCTGTATTGAAACTTTG
TGACTTTGGAAGGTATTGAGTGATTTCTTTTTAAATTTTGGTATTGACAT
CAAAATTGGATCTTTCCTAGTTGTGTTCTCTTATATCATGGTGATCCTTG
ATTAATCTGACTTCATAGAGGCTGACACTCTGAACGCTTATTAGCTACAC
TTAGTAAGAAGGTATATTTGATCCGCGATCGTTTTAAAAAATAATTGAGT
TTAGTTAGATTAAGTCCCTCGAATAGTCACACCTGTATGGTGTGCCTTTT
ATTACGTGTCTGAAATTTGGCTGTAGTCTTTTAGTCTATTTTTCAATTTT
GTCTGTTTGAAAATAATGACTGAAATTCGAAAGAAACTAGAATTTCATTA
TGAGTAAAATTTCATTTTTCCTCCGTAGTGCAAAGATTTTGGTAGCTGGA
GAACCCAACGTGGCTTACATTTGTTCCAGATATTACCGAGCACCAGAACT
AATATTTGGTGCCGTTGATTATACAGTTAATATTGGTAAGTGACAAACTA
GTCAACTTGAACCACCATGTGAAAATTATGTGTTTGAAAGGTTATTCTAA
AAGGAACAAAACCACAAAAAGTAAGAGGCTGGCATTTAAAAATCTTTCAT
AAATTTACATACTCTTTTTGATGGATACCGTCATCTACGCATTGATTGGT
TTCATTCTTTAATTATAGCTGTTCTTCCTTTTGACAGATACTTGGTCAGC
TGGATGCGTTTTAGCAGAACTTCTTCTTGGCCAACCTATCTTTCCTGGTG
ACAGTGGTGTAGACCAACTTGTTGAAATCATCAAAGTGTTAGGGACACCA
ACGAGAGAACAGATACGTGAGATGAACCAACATTATACAGAATTCAAATT
TCCACAAATCAAACCACACCCTTGGTCGAGGGTTAGTCCAATTACTTTTC
AATTATTTTGACTTTAGTTACATGAGAGAAAATGGCTTCTTCAACTTTTG
TTTTTGAACATGTTAATTTACTAGCTAGTGTTACTTTTCCTGGGAACCCT
CACTGTCAAATTAAATTATGCAAACTTTTAAAGTTTTTAGCTCAAAACTG
CATGAAATTTCCGTGAACCATAGCATTTGATCTCAGTTTACGTTAGCTCA
GAAGTACGGCCACCTTAAGTCACTCCCTACATATGTTAAGCTGGCTCTGC
CCTTTATGGAGTGAATTTGACATAAATTAAGTTTGAGGCCACAATTGCTA
AATAGAATGCTACAAAAATCACCCTCCAACCTCTAATTTTCAGGTTTTCC
GTGCAAGGACACCGGCAGATGCAATTTCTTTGACATCACAACTATTGGAA
TATACACCTGGCAGCAGATGCACCCCACTTCAGGCTTGCGCTCATAAGTT
TTTTGATGAACTACGTGAACCTGGAATCAAACTTCCAAATGGGAAGGAGT
TACCAAAACTCTTCAATTTCTCTGCACAAGGTTCGAATAATTTTTCAAAA
ATATTAGACAAAAATTAGTTTATCTTCCGATCCAGCTCCTTTCTAATGTT
ATAAATCTAGATATCTTTTTTGTTTACACTATTCAATATTTTCACATTTT
TAATACTTTACAGAGCTTTCACAGAATGCAAATTTACAGAGCGTCTTGAT
TCCAGAACATTTTCGCAACGCAACCAGCAATAACACAACCACATCTTCAA
GCAACAGTAATTCCAACACTTCCAACAACGCGACGTCGACCTCACAGAGT
AGCAGCACTTCACAACAAACTTCTAGTGCAGTTGTCTCGACTTCTGCATC
ATGATTTGAATGGAATTTCGATGGCCATCCTTTCCAAATCAGTCAATCAA
CGTAAATAAACAAAGTCGTAACTGCTACGAACTACACCAATGTAGATTTA
TGTTGATAAAAGAAAAGTTTTTTATTTGGAAGAAGTTTGGTGGAAATTGT
TGAGAAAACGAAAGGGAGCTGGTCGATATTGCTCTTTAACGAATAATTAG
GTTGAGCTTTTCCTTTCGATACGTTTTAAAGCTCCATTTTCTGTCTCGTT
GATGAAAAAGCCTCACAAGATTCTCAACAACTAAGCTCCTAATCAATTTG
AGTTTACAATGAAAAGTTTTTCATGGATCGGTCTTTTTTTATGAGATCGT
AAACTTTAGCGTGTTCCTAAATTTATTGTTTTTAAAAATAGATTTTATAC
AAACAACCAGTCTATCTTATTGGTAGTCCTTCTGCAAAATGCTGACAAAT
TTTTCCCTCAATTATGCACACAGGCAGATAAGTCTTCTATCACAATCTAC
CAGTCATCAATTTGTCAGAATTTTAGATTTTTATTCGTCTCTGTGTATCA
CTGTTGTTTTTTTGTTATTTCCTCACCATTCTTCAAGTCTTGTGACCAAT
CAAACATCTGGTTATGGAGATTGATTACTTTGACTTTTTGCTAAAATAAT
TTTCAGTACAAAATCCTTTGTTTATGCTTGGGTAATCGAGCTTTGTCTTT
AATATGGTAGAATACTTCTAAACACTCAACAAGTACTGAAATAATTTTAT
CAAAATTAGATTTTCCTGGACTTAAAAACAATTATATTTAACAGACCTCA
TGCAACATTTTCTAGGATTAGTAGGAACAAAAAATTCCCCTTTCCATTTG
TAAATTTGTTTATAAAATTTCTCTGGCGTTTTGCGAACAATTATCCTTTC
AGCATTTTGACAATTGCACAAGTAGATCAGCTTTTGAGTAACCTTTTAAA
ATGGAAAAAGCGTTTTTATTAATTAACAACTATTCTTCGCAGAAATGACT
AGCATTTTTCCAGGTCAATTTATTCATTGTAACAAGATGAAAATTATAAA
TTATGTTGTATTGTAGAGAATACCATTTTTCCAATTTAACAATTTAATAT
TCTCTTTTAGTTTGTTTATCGTTTTTTTATCTTTTTTTTCTGTTTTTGCT
TGTCCTACTCACAATGTACATAAGCTATTAAATGAAATAAAAGTTGACCC
CAAAATAAAAAAAAGCTGTTATCCCGTTCCGTTCTCCTCTACTTTCCAAT
CTTAGATTGAACCAATGAATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016339XLOC_016339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028808-exon-sc0000705-1575043694:23906..24431TCONS_00028808-exon-sc0000705-1575043694:23906..24431Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1575043694:16314..16591TCONS_00028808-exon-sc0000705-1575043694:16314..16591Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1575043694:15848..15958TCONS_00028808-exon-sc0000705-1575043694:15848..15958Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1575043694:13020..13150TCONS_00028808-exon-sc0000705-1575043694:13020..13150Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1575043694:12547..12653TCONS_00028808-exon-sc0000705-1575043694:12547..12653Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1575043694:12151..12344TCONS_00028808-exon-sc0000705-1575043694:12151..12344Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1575043694:11602..11788TCONS_00028808-exon-sc0000705-1575043694:11602..11788Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1575043694:10009..11468TCONS_00028808-exon-sc0000705-1575043694:10009..11468Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1510915933:23906..24431TCONS_00028808-exon-sc0000705-1510915933:23906..24431Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1510915933:16314..16591TCONS_00028808-exon-sc0000705-1510915933:16314..16591Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1510915933:15848..15958TCONS_00028808-exon-sc0000705-1510915933:15848..15958Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1510915933:13020..13150TCONS_00028808-exon-sc0000705-1510915933:13020..13150Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1510915933:12547..12653TCONS_00028808-exon-sc0000705-1510915933:12547..12653Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1510915933:12151..12344TCONS_00028808-exon-sc0000705-1510915933:12151..12344Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1510915933:11602..11788TCONS_00028808-exon-sc0000705-1510915933:11602..11788Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1510915933:10009..11468TCONS_00028808-exon-sc0000705-1510915933:10009..11468Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1491911889:23906..24431TCONS_00028808-exon-sc0000705-1491911889:23906..24431Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1491911889:16314..16591TCONS_00028808-exon-sc0000705-1491911889:16314..16591Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1491911889:15848..15958TCONS_00028808-exon-sc0000705-1491911889:15848..15958Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1491911889:13020..13150TCONS_00028808-exon-sc0000705-1491911889:13020..13150Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1491911889:12547..12653TCONS_00028808-exon-sc0000705-1491911889:12547..12653Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1491911889:12151..12344TCONS_00028808-exon-sc0000705-1491911889:12151..12344Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1491911889:11602..11788TCONS_00028808-exon-sc0000705-1491911889:11602..11788Clytia hemisphaericaexon
TCONS_00028808-exon-sc0000705-1491911889:10009..11468TCONS_00028808-exon-sc0000705-1491911889:10009..11468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000705supercontigsc0000705:10009..24431 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.6196	44.4652	91.7755	100.71	153.996	112.254	71.2607	72.2888	46.0069	39.2939	44.7345	39.2554	46.8154	46.3157	42.4954	41.9092	77.9565	68.482	39.9182	52.0766	96.6212	91.9439	74.62	84.6983	50.6194	54.981	43.6544	37.4914	47.9426	52.2862
Blast
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BLAST of TCONS_00028808 vs. Swiss-Prot (Human)
Match: GSK3B (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0
Identity = 290/383 (75.72%), Postives = 331/383 (86.42%), Query Frame = 1 
Query:  439 MSGRQRTTSLVDPTGRNSSPGSHGGFRITRDKDXXXXXXXXXXXXXXPDTAEEISYSNNKVIGNGSFGVVYQARLVDCNELIAIKKVLQDKRFKNRELQIMRKLDHCNIVKLKYFFYTSGEKKEEVYLNLVQEFVPETVYRVARHYCKNRQTLPLIYIKLYMYQLFRALAYIHSLGVCHRDIKPQNLLLDPDTAVLKLCDFGSAKILVAGEPNVAYICSRYYRAPELIFGAVDYTVNIDTWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNQHYTEFKFPQIKPHPWSRVFRARTPADAISLTSQLLEYTPGSRCTPLQACAHKFFDELREPGIKLPNGKELPKLFNFSAQELSQNANLQSVLIPEHFR 1587
            MSGR RTTS  +       P + G  +++RDKDG  VTTV+AT G  PD  +E+SY++ KVIGNGSFGVVYQA+L D  EL+AIKKVLQDKRFKNRELQIMRKLDHCNIV+L+YFFY+SGEKK+EVYLNLV ++VPETVYRVARHY + +QTLP+IY+KLYMYQLFR+LAYIHS G+CHRDIKPQNLLLDPDTAVLKLCDFGSAK LV GEPNV+YICSRYYRAPELIFGA DYT +ID WSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMN +YTEFKFPQIK HPW++VFR RTP +AI+L S+LLEYTP +R TPL+ACAH FFDELR+P +KLPNG++ P LFNF+ QELS N  L ++LIP H R
Sbjct:    1 MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHAR 383
The following BLAST results are available for this feature:
BLAST of TCONS_00028808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSK3B0.000e+075.72Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]
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