TCONS_00028824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028824
Unique NameTCONS_00028824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028824 ID=TCONS_00028824|Name=TCONS_00028824|organism=Clytia hemisphaerica|type=transcript|length=375bp
TCTCTAGTTCCTTTTGTTTAGCTGCTAATACTTGAGGGTTGTTACTGGAA
CTGTAAAGGACTTCTTCTTCAACTGGCTGccattgaatattttcaaaatc
aacacaCTTAATAACACCCGACACTAAAATTTTAACATTAAACcaatgtt
tattcttgccaTTAGCTTTTCCAGCACGATTAACAGCGATAAACTTTTCT
TCCTTATTGATATCTGGGTCAATGAACAAAATTTGTTGTCCAATACGAGG
AAGCTGAATTTGTTGAGAGCTACTTTTATTTCTACGatcagtctttttct
tatctCCCACCGGATGCGTCGTTTCAACTGTTTGGATCTCTGGTATCTTT
TTGTCAGGTTTAGTAAGCTTAGGTT
Run BLAST on NCBI

protein sequence of TCONS_00028824-protein

>TCONS_00028824-protein ID=TCONS_00028824-protein|Name=TCONS_00028824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
PKLTKPDKKIPEIQTVETTHPVGDKKKTDRRNKSSSQQIQLPRIGQQILF
IDPDINKEEKFIAVNRAGKANGKNKHWFNVKILVSGVIKCVDFENIQWQP
VEEEVLYSSSNNPQVLAAKQKELE
Run BLAST on NCBI

transcript from alignment at sc0000705:78822..79196

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028824 ID=TCONS_00028824|Name=TCONS_00028824|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at sc0000705:78822..79196 (Clytia hemisphaerica)
AACCTAAGCTTACTAAACCTGACAAAAAGATACCAGAGATCCAAACAGTT
GAAACGACGCATCCGGTGGGagataagaaaaagactgatCGTAGAAATAA
AAGTAGCTCTCAACAAATTCAGCTTCCTCGTATTGGACAACAAATTTTGT
TCATTGACCCAGATATCAATAAGGAAGAAAAGTTTATCGCTGTTAATCGT
GCTGGAAAAGCTAAtggcaagaataaacattgGTTTAATGTTAAAATTTT
AGTGTCGGGTGTTATTAAGtgtgttgattttgaaaatattcaatggCAGC
CAGTTGAAGAAGAAGTCCTTTACAGTTCCAGTAACAACCCTCAAGTATTA
GCAGCTAAACAAAAGGAACTAGAGA

Coding sequence (CDS) from alignment at sc0000705:78822..79196

>TCONS_00028824 ID=TCONS_00028824|Name=TCONS_00028824|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000705:78822..79196 (Clytia hemisphaerica)
CCTAAGCTTACTAAACCTGACAAAAAGATACCAGAGATCCAAACAGTTGA
AACGACGCATCCGGTGGGagataagaaaaagactgatCGTAGAAATAAAA
GTAGCTCTCAACAAATTCAGCTTCCTCGTATTGGACAACAAATTTTGTTC
ATTGACCCAGATATCAATAAGGAAGAAAAGTTTATCGCTGTTAATCGTGC
TGGAAAAGCTAAtggcaagaataaacattgGTTTAATGTTAAAATTTTAG
TGTCGGGTGTTATTAAGtgtgttgattttgaaaatattcaatggCAGCCA
GTTGAAGAAGAAGTCCTTTACAGTTCCAGTAACAACCCTCAAGTATTAGC
AGCTAAACAAAAGGAACTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016351XLOC_016351Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028824-proteinTCONS_00028824-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028824-exon-sc0000705-1491911889:78822..79196TCONS_00028824-exon-sc0000705-1491911889:78822..79196Clytia hemisphaericaexon
TCONS_00028824-exon-sc0000705-1510915933:78822..79196TCONS_00028824-exon-sc0000705-1510915933:78822..79196Clytia hemisphaericaexon
TCONS_00028824-exon-sc0000705-1575043694:78822..79196TCONS_00028824-exon-sc0000705-1575043694:78822..79196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000705supercontigsc0000705:78822..79196 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2238	1.23024	4.26749	0.948277	4.32323	4.32728	4.86633	3.82434	1.80099	2.16311	1.94876	2.27905	1.50347	0.590452	0.30861	0.423686	0.16044	0.19849	0.285402	1.06056	2.46151	2.11661	0.369835	0.278691	3.02765	2.4554	1.0574	0	0.534898	0.317513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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