TCONS_00028848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028848
Unique NameTCONS_00028848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028848 ID=TCONS_00028848|Name=TCONS_00028848|organism=Clytia hemisphaerica|type=transcript|length=654bp
tgtagATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCTT
GTATCAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATT
CTGAAAGATGATAAAAAGACTTGCGAAGATCATGATGAATGTCTTGTCTT
GAATGGAGGTTGTTCACATGCTTGTATCAATACGAAAGGGAGTTTCCTTT
GCTCGTGCCCGATTGGTTGGATTCTAAAGGATGACAAAAAGACTTGCGAA
GATACTCGTTCACCAATAACCACGACATCTCTTACCACAACTACTATTAA
ATCAACACCAATATCTCCCTCAATCACCACTAAAATTGTCATTAACGATA
ATCGAATACACCATCAACCATCAGTTAAACCATCACCAGCACCTCATCAT
catcgattaaaaacatcacGAAGTATCTCAAATCAGACTAATCTGAAATC
TTCATCACCTAATAACACTAATACTAACTTAACCAGTAATTCATTAAACA
TTACAACGTTAAACTCCGCTAACCATGACATTGATAAACTGGTTAAATCC
AGTGATGGCAAATTACATTTACATTCACCTTTGATAGTCGGTTGTATTGT
AGCTGTGGTATTAATAGCTGCTTGTATTGTGGTCAAAGTATGGCTAAAAA
AGAA
Run BLAST on NCBI

protein sequence of TCONS_00028848-protein

>TCONS_00028848-protein ID=TCONS_00028848-protein|Name=TCONS_00028848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
VDHNECLVSNGGCSHACINTKGSFLCSCPIGWILKDDKKTCEDHDECLVL
NGGCSHACINTKGSFLCSCPIGWILKDDKKTCEDTRSPITTTSLTTTTIK
STPISPSITTKIVINDNRIHHQPSVKPSPAPHHHRLKTSRSISNQTNLKS
SSPNNTNTNLTSNSLNITTLNSANHDIDKLVKSSDGKLHLHSPLIVGCIV
AVVLIAACIVVKVWLKK
Run BLAST on NCBI

transcript from alignment at sc0000708:108555..110742+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028848 ID=TCONS_00028848|Name=TCONS_00028848|organism=Clytia hemisphaerica|type=transcript|length=2188bp|location=Sequence derived from alignment at sc0000708:108555..110742+ (Clytia hemisphaerica)
tgtagATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCTT
GTATCAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATT
CTGAAAGATGATAAAAAGACTTGCGAAGGTAAATCCGACTAATTGTCGAC
CAAACTTATTTcctttggaaatattttgatattacattttcataacttaa
atAGCTTTGCCATGAAATAAGAGGTTTCATTTATGACTATAAAAGGCTTT
TGCAGGCTAAAAATCTTCAAAGCATTTGGATATCATTTCAAATAAAGTGg
atgaagatttaaaaattggAGGAGCGGGGGTGTATAGAGAAGTGTCTCat
ccagtagcgtggtgggtcgactaaaattcggGCAAACTGGGGATGCAATT
tcagaagattttgattttggcgccccctatgaaaagtaaatattttttaa
aaaataactcGAGTGAAGCGAGCACgaaattttctctctttttggccgaA
CACTCTCACatctaaggtgtaaaagagcaaaggAGCGCCGAAATTAGTAA
TTAAAGGCGTCTTTTTGCACCCACGGTGCCCCTTTGAAAAAAATCCGCTG
GGGTCATCCAAATAAAGTGGATGAAGATttaaaaatggggggggggtata
TAGAGGAGTGTCTCATCGCCCTGCAAGATTTCtattattcaaagaaaatt
ctgtCGCGCTGATTAGTCAAACAGGTCAAAAAAAAGACCAAATATTTCGA
GAGCTCATTTGATTAAACCACAAACaacatctttttttttaaatctgtag
ATCATGATGAATGTCTTGTCTTGAATGGAGGTTGTTCACATGCTTGTATC
AATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATTCTAAA
GGATGACAAAAAGACTTGCGAAGGTACGACTCAAAAACTGAAttaatttt
aaaggttttgtttttaaataagagtgatatcgctTGCTTATTTGTCAATT
TTAAcccacaagctttttcacattggattgacacatatgtggagcaagat
tggtcagaaagaggaaaagaacaaCAACTTTTTGCTTACTTTTTgaaaga
cactgtcctgatatgaaacatgtgtctgatatgaaacgggaacacttatg
taaaaataaaacctttaaatttggAATCGACAGTGAATATTATGAAGTCT
TTTTCACTGTTCTAGTATAAGCCTTATTTTATTAAAGAGTGAACAGATAT
CAGAAGGGCCAATGTGTCTTGATGCATTCTACTATAACAAGTTTTATGAG
AACGAGAGAATTTCTTTACAACCTAAAGAGGCTGTTTTGGTTTCTATGAA
CTCCCAAGCTCTTCcccaggcagggtgttagggaaatatggtgatagact
ctctaccttcactcacaTGTCGCTATGAACTCTAGTTTGAAAAATACCAA
ATCTAAACTTACATACGAGATCAGCCTTTAAAGTATATATCGAAAAACTA
TTCCTTAACAGATACTCGTTCACCAATAACCACGACATCTCTTACCACGA
CTACTATTAAATTAACACCAACATCTCTCTCAGTCACCACTAAAATTGTC
ACTAACGATAATCGAATACACCATCAACCATCAGTTAAACCATCACCAGG
ACCTCATCATCATCGATTGNactctctaccttcactcacaTGTCGCTATG
AACTCTAGTTAAAAAAAAGACCAATTCTAAACTTACATACGAGATCAGCC
TTTAAAGTATATATCGAAAAACCATTCCTTAACAGATACTCGTTCACCAA
TAACCACGACATCTCTTACCACAACTACTATTAAATCAACACCAATATCT
CCCTCAATCACCACTAAAATTGTCATTAACGATAATCGAATACACCATCA
ACCATCAGTTAAACCATCACCAGCACCTCATCATcatcgattaaaaacat
cacGAAGTATCTCAAATCAGACTAATCTGAAATCTTCATCACCTAATAAC
ACTAATACTAACTTAACCAGTAATTCATTAAACATTACAACGTTAAACTC
CGCTAACCATGACATTGATAAACTGGTTAAATCCAGTGATGGCAAATTAC
ATTTACATTCACCTTTGATAGTCGGTTGTATTGTAGCTGTGGTATTAATA
GCTGCTTGTATTGTGGTCAAAGTATGGCTAAAAAAGAA

Coding sequence (CDS) from alignment at sc0000708:108555..110742+

>TCONS_00028848 ID=TCONS_00028848|Name=TCONS_00028848|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at sc0000708:108555..110742+ (Clytia hemisphaerica)
gtagATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCTTG
TATCAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATTC
TGAAAGATGATAAAAAGACTTGCGAAGATCATGATGAATGTCTTGTCTTG
AATGGAGGTTGTTCACATGCTTGTATCAATACGAAAGGGAGTTTCCTTTG
CTCGTGCCCGATTGGTTGGATTCTAAAGGATGACAAAAAGACTTGCGAAG
ATACTCGTTCACCAATAACCACGACATCTCTTACCACAACTACTATTAAA
TCAACACCAATATCTCCCTCAATCACCACTAAAATTGTCATTAACGATAA
TCGAATACACCATCAACCATCAGTTAAACCATCACCAGCACCTCATCATc
atcgattaaaaacatcacGAAGTATCTCAAATCAGACTAATCTGAAATCT
TCATCACCTAATAACACTAATACTAACTTAACCAGTAATTCATTAAACAT
TACAACGTTAAACTCCGCTAACCATGACATTGATAAACTGGTTAAATCCA
GTGATGGCAAATTACATTTACATTCACCTTTGATAGTCGGTTGTATTGTA
GCTGTGGTATTAATAGCTGCTTGTATTGTGGTCAAAGTATGGCTAAAAAA
GgtagATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCTT
GTATCAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGATT
CTGAAAGATGATAAAAAGACTTGCGAAGATCATGATGAATGTCTTGTCTT
GAATGGAGGTTGTTCACATGCTTGTATCAATACGAAAGGGAGTTTCCTTT
GCTCGTGCCCGATTGGTTGGATTCTAAAGGATGACAAAAAGACTTGCGAA
GATACTCGTTCACCAATAACCACGACATCTCTTACCACAACTACTATTAA
ATCAACACCAATATCTCCCTCAATCACCACTAAAATTGTCATTAACGATA
ATCGAATACACCATCAACCATCAGTTAAACCATCACCAGCACCTCATCAT
catcgattaaaaacatcacGAAGTATCTCAAATCAGACTAATCTGAAATC
TTCATCACCTAATAACACTAATACTAACTTAACCAGTAATTCATTAAACA
TTACAACGTTAAACTCCGCTAACCATGACATTGATAAACTGGTTAAATCC
AGTGATGGCAAATTACATTTACATTCACCTTTGATAGTCGGTTGTATTGT
AGCTGTGGTATTAATAGCTGCTTGTATTGTGGTCAAAGTATGGCTAAAAA
AGgtagATCACAATGAATGTCTAGTCTCGAATGGAGGATGTTCACATGCT
TGTATCAATACGAAAGGGAGTTTCCTTTGCTCGTGCCCGATTGGTTGGAT
TCTGAAAGATGATAAAAAGACTTGCGAAGATCATGATGAATGTCTTGTCT
TGAATGGAGGTTGTTCACATGCTTGTATCAATACGAAAGGGAGTTTCCTT
TGCTCGTGCCCGATTGGTTGGATTCTAAAGGATGACAAAAAGACTTGCGA
AGATACTCGTTCACCAATAACCACGACATCTCTTACCACAACTACTATTA
AATCAACACCAATATCTCCCTCAATCACCACTAAAATTGTCATTAACGAT
AATCGAATACACCATCAACCATCAGTTAAACCATCACCAGCACCTCATCA
TcatcgattaaaaacatcacGAAGTATCTCAAATCAGACTAATCTGAAAT
CTTCATCACCTAATAACACTAATACTAACTTAACCAGTAATTCATTAAAC
ATTACAACGTTAAACTCCGCTAACCATGACATTGATAAACTGGTTAAATC
CAGTGATGGCAAATTACATTTACATTCACCTTTGATAGTCGGTTGTATTG
TAGCTGTGGTATTAATAGCTGCTTGTATTGTGGTCAAAGTATGGCTAAAA
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016371XLOC_016371Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028848-proteinTCONS_00028848-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028848-exon-sc0000708-1491911889:108555..108682TCONS_00028848-exon-sc0000708-1491911889:108555..108682Clytia hemisphaericaexon
TCONS_00028848-exon-sc0000708-1510915933:108555..108682TCONS_00028848-exon-sc0000708-1510915933:108555..108682Clytia hemisphaericaexon
TCONS_00028848-exon-sc0000708-1575043694:108555..108682TCONS_00028848-exon-sc0000708-1575043694:108555..108682Clytia hemisphaericaexon
TCONS_00028848-exon-sc0000708-1491911889:109355..109477TCONS_00028848-exon-sc0000708-1491911889:109355..109477Clytia hemisphaericaexon
TCONS_00028848-exon-sc0000708-1510915933:109355..109477TCONS_00028848-exon-sc0000708-1510915933:109355..109477Clytia hemisphaericaexon
TCONS_00028848-exon-sc0000708-1575043694:109355..109477TCONS_00028848-exon-sc0000708-1575043694:109355..109477Clytia hemisphaericaexon
TCONS_00028848-exon-sc0000708-1491911889:110340..110742TCONS_00028848-exon-sc0000708-1491911889:110340..110742Clytia hemisphaericaexon
TCONS_00028848-exon-sc0000708-1510915933:110340..110742TCONS_00028848-exon-sc0000708-1510915933:110340..110742Clytia hemisphaericaexon
TCONS_00028848-exon-sc0000708-1575043694:110340..110742TCONS_00028848-exon-sc0000708-1575043694:110340..110742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000708supercontigsc0000708:108555..110742 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45123	1.00595	1.48807	0.814802	1.07514	0.509754	1.18569	1.01175	0.212696	0.195557	0.584355	0.163758	2.52673	1.15276	0.183162	0.150339	0	0.154022	4.68476	5.1437	0.65744	1.03543	0.180991	0.891631	0.553933	0.811096	0	1.10797	0	0.435559
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR013032EGF-like_CS
IPR018097EGF_Ca-bd_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00028848 vs. Swiss-Prot (Human)
Match: SCUB1 (Signal peptide, CUB and EGF-like domain-containing protein 1 OS=Homo sapiens GN=SCUBE1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 5.602e-20
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   17 CLVSNGGCSHACINTKGSFLCSCPIGWILKDDKKTCEDHDECLVLNGGCSHACINTKGSFLCSCPIGWILKDDKKTCED 253
            C V+NGGC   C +T     CSCP+G+ L+ D KTC+D +ECLV NGGC H C NT GSF C C  G+ L  D++TC+D
Sbjct:  245 CAVNNGGCDRTCKDTATGVRCSCPVGFTLQPDGKTCKDINECLVNNGGCDHFCRNTVGSFECGCRKGYKLLTDERTCQD 323

HSP 2 Score: 78.5666 bits (192), Expect = 1.685e-16
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:    5 DHNECLVSNGGCSHACINTKGSFLCSCPIGWILKDDKKTCEDHDECLVLNGGCSHACINTKGSFLCSCPIGWIL 226
            D NECLV+NGGC H C NT GSF C C  G+ L  D++TC+D DEC      C H CIN+ GSF C C  G+IL
Sbjct:  282 DINECLVNNGGCDHFCRNTVGSFECGCRKGYKLLTDERTCQDIDEC-SFERTCDHICINSPGSFQCLCHRGYIL 354
The following BLAST results are available for this feature:
BLAST of TCONS_00028848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCUB15.602e-2053.16Signal peptide, CUB and EGF-like domain-containing... [more]
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